Highly migratory species predictive spatial modeling (PRiSM): an analytical framework for assessing the performance of spatial fisheries management

Spatial management for highly migratory species (HMS) is difficult due to many species’ mobile habits and the dynamic nature of oceanic habitats. Current static spatial management areas for fisheries in the United States have been in place for extended periods of time with limited data collection inside the areas, making any analysis of their efficacy challenging. Spatial modeling approaches can be specifically designed to integrate species data from outside of closed areas to project species distributions inside and outside closed areas relative to the fishery. We developed HMS-PRedictive Spatial Modeling (PRiSM), which uses fishery-dependent observer data of species’ presence–absence, oceanographic covariates, and gear covariates in a generalized additive model (GAM) framework to produce fishery interaction spatial models. Species fishery interaction distributions were generated monthly within the domain of two HMS longline fisheries and used to produce a series of performance metrics for HMS closed areas. PRiSM was tested on bycatch species, including shortfin mako shark (Isurus oxyrinchus), billfish (Istiophoridae), and leatherback sea turtle (Dermochelys coriacea) in a pelagic longline fishery, and sandbar shark (Carcharhinus plumbeus), dusky shark (C. obscurus), and scalloped hammerhead shark (Sphyrna lewini) in a bottom longline fishery. Model validation procedures suggest PRiSM performed well for these species. The closed area performance metrics provided an objective and flexible framework to compare distributions between closed and open areas under recent environmental conditions. Fisheries managers can use the metrics generated by PRiSM to supplement other streams of information and guide spatial management decisions to support sustainable fisheries.

Vulnerability Assessment of Pelagic Sharks in the Western North Pacific by Using an Integrated Ecological Risk Assessment

The vulnerability of 11 pelagic shark species caught by the Taiwanese coastal and offshore longline fisheries in the western North Pacific were assessed by an ecological risk assessment (ERA) and 10 of the 11 species was assessed by using an integrated ERA developed in this study. The intrinsic rate of population growth was used to estimate the productivity of sharks, and the susceptibility of sharks was estimated by the multiplication of the catchability, selectivity, and post-capture mortality. Three indices namely, the IUCN Red List category, the body weight variation trend, and the inflection point of population growth curve coupled with ERA were used to conduct an integrated ERA. The results indicated that the scalloped hammerhead is at the highest risk (group 1), followed by the silky shark, and the spinner shark at high risk (group 2). The bigeye thresher, and sandbar shark fall in group 3, the smooth hammerhead falls in group 4, and the shortfin mako, pelagic thresher, oceanic whitetip, and dusky shark fall in group 5. Rigorous management measures for the species in groups 1 and 2, setting total allowable catch quota for group 3, and consistent monitoring schemes for groups 4 and 5 are recommended.

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species

Profiles of symbiotic microbial communities (“microbiomes”) can provide insight into the natural history and ecology of their hosts. Using high throughput DNA sequencing of the 16S rRNA V4 region, microbiomes of five shark species in South Florida (nurse, lemon, sandbar, Caribbean reef, and tiger) have been characterized for the first time. The microbiomes show species specific microbiome composition, distinct from surrounding seawater. Shark anatomical location (gills, teeth, skin, cloaca) affected the diversity of microbiomes. An in-depth analysis of teeth communities revealed species specific microbial communities. For example, the genus Haemophilus, explained 7.0% of the differences of the teeth microbiomes of lemon and Caribbean reef sharks. Lemon shark teeth communities (n = 11) contained a high abundance of both Vibrio (10.8 ± 26.0%) and Corynebacterium (1.6 ± 5.1%), genera that can include human pathogenic taxa. The Vibrio (2.8 ± 6.34%) and Kordia (3.1 ± 6.0%) genera and Salmonella enterica (2.6 ± 6.4%) were the most abundant members of nurse shark teeth microbial communities. The Vibrio genus was highly represented in the sandbar shark (54.0 ± 46.0%) and tiger shark (5.8 ± 12.3%) teeth microbiomes. The prevalence of genera containing potential human pathogens could be informative in shark bite treatment protocols and future research to confirm or deny human pathogenicity. We conclude that South Florida sharks host species specific microbiomes that are distinct from their surrounding environment and vary due to differences in microbial community composition among shark species and diversity and composition among anatomical locations. Additionally, when considering the confounding effects of both species and location, microbial community diversity and composition varies.

Using historical and citizen science data to improve knowledge about the occurrence of the elusive sandbar shark Carcharhinus plumbeus (Chondrichthyes – Carcharhinidae) in the Adriatic Sea

The Mediterranean Sea is an extinction hotspot for sharks, skates, and rays, with at least half of all species being threatened. The sandbar shark Carcharhinus plumbeus is among the most threatened species and is declared endangered (EN) in the Mediterranean according to the IUCN Red List of Threatened Species. The Adriatic Sea was previously proposed to be an important nursery area for this species based on sporadic sightings of neonates and juveniles. However, this species is generally considered to be rare in this region, and reports of its presence are scarce. Here, we present new records for the sandbar shark in the Adriatic Sea and review spatial and temporal data accumulated from literature, museum specimens, and citizen science initiatives in an attempt to assess the distribution and seasonality of this species. The majority of the records were from neonate and juvenile sandbar sharks, and three hotspots for their occurrence could be identified: (1) the Emilia-Romagna region, (2) the Veneto region, and (3) the Gulf of Trieste. Our data indicate a high concentration of sandbar sharks around the delta of the Po river, emphasising the need for scientific surveys in this confined area in order to confirm a possible nursery ground. Data collected by citizen science initiatives reveal that this species is still present in the Adriatic Sea and might be more abundant than previously thought, underlining the potential of citizen science as a valuable tool to monitor the distribution of rare and endangered species.

Evidence of a second nursery area of the sandbar shar, Carcharhinus plumbeus (Nardo, 1827) in the Eastern Mediterranean Sea

The sandbar shark (Carcharhinus plumbeus) is a large coastal species with a cosmopolitan distribution that has been listed as Endangered in the Mediterranean Sea and as Vulnerable for the rest of the world on the IUCN Red List of threatened species. The Gökova's Boncuk Cove in south-western Turkey and the Gulf of Gabès in southern Tunisia are the only known nursery area for the Mediterranean population. On 24 – 27 July 2017, eight specimens, four males and four females, of sandbar sharks were accidentally caught at a depth of 7 to 9 m by a pelagic bluefish longline off the coast of Yumurtalik Bight in the Gulf of Iskenderun. The total length and weight of males and females were 54.5 – 61.0 cm, 930 – 1,484 g and 49.6 – 62.4 cm, 918 – 1,568 g, respectively. They all had unhealed umbilical scars that were still open as a narrow slit, measuring 4.35 and 5.39 mm in lengths. This study thus provides the records of the neonate sandbar sharks from the Yumurtalik Bight. Consequently, this occurrence represents that this area of the north-eastern Mediterranean Sea can be the second breeding and nursery grounds for this species after the Boncuk Cove in Gökova Bay in Turkey.

Sensitivity of a shark nursery habitat to a changing climate

Nursery area habitats such as estuaries are vital for the success of many fish populations. Climate change is altering conditions in these areas, which can thus impact the availability of suitable nursery habitat. The sandbar shark Carcharhinus plumbeus uses Chesapeake Bay (USA) as a nursery habitat during the summer months from birth up to 10 yr of age. To assess the impacts of climate change on juvenile sandbar sharks, we developed a habitat model using longline data collected from a fishery-independent survey within Chesapeake Bay. With this model, we projected contemporary and future distributions of suitable habitat for juvenile sandbar sharks in Chesapeake Bay under varying environmental regimes. Predicted suitable juvenile sandbar shark habitat was negatively impacted by future increases in temperature, but positively influenced by future decreases in dissolved oxygen. The latter trend was likely related to the habitat partitioning that occurs between different life stages. Changes in salinity had relatively small impacts. By end-of-century the projected amount of suitable bottom habitat decreased; however, when incorporating the entire water column, projected suitable habitat increased. This suggests that juvenile sandbar sharks may need to make a behavioral shift to avoid non-preferred conditions, which could alter their foraging ecology or refuge strategies. As nursery habitats change with climate change, it is crucial to understand how a species may be impacted during this vital life stage when trying to predict overall species success in the future.

Fatal Infection in a Wild Sandbar Shark (Carcharhinus plumbeus), Caused by Streptococcus agalactiae, Type Ia-ST7

Streptococcus agalactiae is one of the most important fish pathogenic bacteria as it is responsible for epizootic mortalities in both wild and farmed species. S. agalactiae is also known as a zoonotic agent. In July 2018, a stranded wild sandbar shark (Carcharhinus plumbeus), one of the most common shark species in the Mediterranean Sea, was found moribund on the seashore next to Netanya, Israel, and died a few hours later. A post-mortem examination, histopathology, classical bacteriology and advanced molecular techniques revealed a bacterial infection caused by S. agalactiae, type Ia-ST7. Available sequences publicly accessible databases and phylogenetic analysis suggest that the S. agalactiae isolated in this case is closely related to fish and human isolates. To the best of our knowledge, this is the first description of a fatal streptococcosis in sandbar sharks.

Patterns in abundance and size of sharks in northwestern Australia: cause for optimism

Reliable information for population assessments is rare for sharks. We quantified patterns in catch rates and mean size for numerous tropical and subtropical species from 15 years of fishery-independent surveys (2002–2017) in northwestern Australia. This study region represents an area of ~0.8 million km2 which was closed to commercial shark fishing from 1993 or 2005 onward due to the very high State-wide catches of sandbar (Carcharhinus plumbeus) and dusky (Carcharhinus obscurus) sharks. A total of 43 shark and ray species were sampled, with sandbar shark being the most commonly caught species, followed by milk (Rhizoprionodon acutus), spot-tail (Carcharhinus sorrah), tiger (Galeocerdo cuvier), blacktip (Carcharhinus limbatus and Carcharhinus tilstoni), dusky and sliteye (Loxodon macrorhinus) sharks, and scalloped hammerhead (Sphyrna lewini). For sandbar shark, catch rates increased between 2008 and 2017 whereas for other taxa catch rates were mostly stable (albeit fluctuating). Mean size at capture fluctuated across years with no particular trends. Unlike for other parts of the world, catch rates and mean size of northwestern Australian sharks have been stable or increased in recent years. Though most shark species have conservative life histories, when science, management and enforcement work synergistically, sustainable resource use, recovery and conservation outcomes can all be achieved.