Satellite-Based Monitoring of Primary Production in a Mediterranean Islet Post Black Rat Eradication

Invasive rodents have a detrimental impact on terrestrial ecosystem functioning, this is often exacerbated on small islands. Rat eradication campaigns are often used to deal with this environmental perturbation given their classification as invasive species. Studies assessing the effects of rodent control at ecosystem scale are scarce and thus little is known about the subsequent functional response of vegetation subsequent to rat control. In this work, we use remote sensing to assess the effects of black rat (Rattus rattus) eradication on Mediterranean vegetation productivity in the Sa Dragonera Islet, Mallorca (Spain). Rats feed on seeds, sprouts, and leaves of woody vegetation and hence we expect primary production to increase nine years after the rodenticide campaign. The Break Detection approach for additive season and trend (BFAST method) was adopted to examine changes in vegetation density before and after the eradication campaign in Sa Dragonera Islet (Balearic Islands), using a temporal series of monthly NDVI data extracted from Landsat imagery. The same temporal trends were examined for a control zone where no rat eradication took place, in order to control for weather-driven changes. The results of this study revealed changes across the 21-year monthly NDVI time series. However, the dates, magnitude, and trend of these changes could not be explicitly attributed to the action of rats, when compared to the historical changes on the islet and the changes found to co-occur within the control zone. These finding could, perhaps, be explained by the high resilience of Mediterranean shrubs to browsing including that of rat invasion. However, the results from the study appear to show that rat damage on specific plant species, with little contribution to global NDVI values, would be overshadowed by the effects of broader environmental factors in this remote sensing approach. The results suggest that the current passive restoration scheme imposed following eradication is not sufficient for effective ecosystem restoration.

Nesting Success and Nesting Height in the Critically Endangered Medium Tree Finch (Camarhynchus pauper)

When different introduced species across trophic levels (parasite, predator) invade island systems, they may pose significant threats to nesting birds. In this study, we measure nesting height and infer causes of offspring mortality in the critically endangered Medium Tree Finch (Camarhynchus pauper), an island endemic restricted to Floreana Island on the Galápagos Archipelago. Considering all nests at which a male built a nest, sang and attempted to attract a female (n = 222 nests), only 10.4% of nests produced fledglings (5% of nests had total fledging success, 5.4% of nests had partial fledging success). Of the 123 nests chosen by a female, 18.7% produced fledglings and of 337 eggs laid, 13.4% produced fledglings. Pairing success was higher for older males, but male age did not predict nesting success. All nests with chicks were infested with avian vampire fly larvae (Philornis downsi). We attributed the cause of death to avian vampire fly if chicks were found dead in the nest with fly larvae or pupae (45%) present. We inferred avian (either Asio flammeus galapagoensis or Crotophaga ani) predation (24%) if the nest was empty but dishevelled; and black rat (Rattus rattus) predation (20%) if the nest was empty but undamaged. According to these criteria, the highest nests were depredated by avian predators, the lowest nests by rats, and intermediate nests failed because of avian vampire fly larvae. In conclusion, there is no safe nesting height on Floreana Island under current conditions of threats from two trophic levels (introduced parasitic dipteran, introduced mammalian/avian predators; with Galápagos Short-Eared Owls being the only native predator in the system).

Acquisition of yersinia murine toxin enabled Yersinia pestis to expand the range of mammalian hosts that sustain flea-borne plague

Yersinia murine toxin (Ymt) is a phospholipase D encoded on a plasmid acquired by Yersinia pestis after its recent divergence from a Yersinia pseudotuberculosis progenitor. Despite its name, Ymt is not required for virulence but acts to enhance bacterial survival in the flea digestive tract. Certain Y. pestis strains circulating in the Bronze Age lacked Ymt, suggesting that they were not transmitted by fleas. However, we show that the importance of Ymt varies with host blood source. In accordance with the original description, Ymt greatly enhanced Y. pestis survival in fleas infected with bacteremic mouse, human, or black rat blood. In contrast, Ymt was much less important when fleas were infected using brown rat blood. A Y. pestis Ymt−mutant infected fleas nearly as well as the Ymt+ parent strain after feeding on bacteremic brown rat blood, and the mutant was transmitted efficiently by flea bite during the first weeks after infection. The protective function of Ymt correlated with red blood cell digestion kinetics in the flea gut. Thus, early Y. pestis strains that lacked Ymt could have been maintained in flea-brown rat transmission cycles, and perhaps in other hosts with similar blood characteristics. Acquisition of Ymt, however, served to greatly expand the range of hosts that could support flea-borne plague.

Propagation du Lyssavirus chez les petits mammifères (Muridae et Soricidae) dans la Préfecture de Kindia, République de Guinée (Basse Guinée)

L’étude porte sur la propagation du Lyssavirus chez les petits mammifères dans la Préfecture de Kindia (Basse Guinée) a été réalisée entre avril 2015 et mars 2016 dans les différents biotopes (Maisons habitées, Forêts-Buissons, Champs agricoles, Entrepôts et Berges) et qui a pour objectif: Contribuée à l’amélioration de l’état de santé de la population. Pendant cette période d’étude, 412 rongeurs repartis en 12 espèces ont été capturées à savoir le rat d’herbe-Arvicanthis rufinus, les rats-Cricetomys gambianus, les rats-Crocidurinae spp., les souris rayées-Lemniscomys striatus, Lophuromys ansorgei, Lophuromys sikapusi, le rat à mamelles multiples-Mastomys spp., souris de maison-Mus musculus, Pelomys fallax, le rat de forêt-Praomys rostratus, le rat noir-Rattus rattus et le Malacomys edyardsi spp. Les plus répandus sont les Mastomys, Rattus rattus, Mus musculus et Cricetomys gambianus. En saison sèche, le nombre de rongeurs capturés dans la préfecture de Kindia a atteint 292 (71%) contre 120 (29%) rongeurs en saison pluvieuse. Pour des fins de recherches virologiques, le cerveau de 221 rongeurs a été prélevé et analysé parmi eux, 18 (8%) ont été trouvé porteurs de l’ARN de Lyssavirus. English title: Spread of Lyssavirus among small mammals (Muridae and Soricidae) in Kindia prefecture, Republic of Guinea (Lower Guinea) The study focuses on the spread of Lyssavirus among small mammals in the Prefecture of Kindia (Lower Guinea) was carried out between April 2015 and March 2016 in the different biotopes (inhabited houses, Forests-Bushes, Agricultural fields, Warehouses and Banks) and which has for objective: Contributed to the improvement of the state of health of the population. During this period, 412 rodents were caught in 12 species including the grass rat-Arvicanthis rufinus, the Cricetomys gambianus-rats, the Crocidurinae spp rats, striped mice Lemniscomys striatus, Lophuromys ansorgei, Lophuromys sikapusi, the multiple-teat rat-Mastomys spp., house mouse-Mus musculus, Pelomys fallax, forest rat-Praomys rostratus, black rat-Rattus rattus, and Malacomys edwardsi spp. The most common are: Mastomys spp., Rattus rattus, Mus musculus and Cricetomys gambianus. In the dry season, the number of rodents caught in the prefecture of Kindia reached 292 (71%) against 120 (29%) rodents caught during the rainy season. For virological research purposes, the brain of 221 rodents was collected and analyzed among them 18 rodents (8%) were found to carry Lyssavirus RNA.

Rodent-Borne Orthohantaviruses in Vietnam, Madagascar and Japan

Hantaviruses are harbored by multiple small mammal species in Asia, Europe, Africa, and the Americas. To ascertain the geographic distribution and virus-host relationships of rodent-borne hantaviruses in Japan, Vietnam, Myanmar, and Madagascar, RNAlater™-preserved lung tissues of 981 rodents representing 40 species, collected in 2011–2017, were analyzed for hantavirus RNA by RT-PCR. Our data showed Hantaan orthohantavirus Da Bie Shan strain in the Chinese white-bellied rat (Niviventer confucianus) in Vietnam, Thailand; orthohantavirus Anjo strain in the black rat (Rattus rattus) in Madagascar; and Puumala orthohantavirus Hokkaido strain in the grey-sided vole (Myodes rufocanus) in Japan. The Hokkaido strain of Puumala virus was also detected in the large Japanese field mouse (Apodemus speciosus) and small Japanese field mouse (Apodemus argenteus), with evidence of host-switching as determined by co-phylogeny mapping.

Molecular epidemiology of Leptospira spp. among wild mammals and a dog in Amami Oshima Island, Japan

Leptospirosis is a worldwide zoonosis caused by the pathogenic Leptospira spp. Canine and human leptospirosis sometimes occur on Amami Oshima Island, located in the Nansei Archipelago, southwestern Japan; however, information on the causative Leptospira spp. on this island is quite limited. This study aimed to investigate the molecular and serological characteristics of Leptospira spp. isolated from wild animals and a dog in Amami Oshima Island. We obtained seven Leptospira strains by culturing kidney tissues of wild animals, such as black rats (2), wild boars (3), and rabbit (1) as well as blood from a symptomatic dog. Using flaB sequencing and microscopic agglutination test with antisera for 18 serovars, the isolates were identified as Leptospira borgpetersenii serogroups Javanica (black rat), L. interrogans serogroup Australis (black rat and dog), and L. interrogans serogroup Hebdomadis (wild boar and rabbit). The sequence type (ST) of L. borgpetersenii serogroup Javanica was determined to be ST143 via multilocus sequence typing (MLST) using seven housekeeping genes. For L. interrogans, MLST and multiple-locus variable-tandem repeat analysis (MLVA) revealed identical ST and MLVA types in rat and canine isolates, whereas two STs and MLVA types were identified in wild boar isolates. The STs and MLVA types of rabbit and one of the wild boars were identical. Bacterial culture and flaB-nested polymerase chain reaction demonstrated a high rate of Leptospira infection in wild boars (58.3%, 7/12), whereas Leptospira spp. were detected in 4.8% of black rats (2/42). This study revealed diverse Leptospira genotype and serotype maintenance in wild mammals on Amami Oshima Island. MLST and MLVA indicated that black rats were a source of canine infection. Wild boars carry L. interrogans and are considered an important maintenance host because antibodies against serogroup Hebdomadis were detected in human and canine leptospirosis patients on this island.

Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history

The distribution of the black rat (Rattus rattus) has been heavily influenced by its association with humans. The dispersal history of this non-native commensal rodent across Europe, however, remains poorly understood, and different introductions may have occurred during the Roman and medieval periods. Here, in order to reconstruct the population history of European black rats, we generated a de novo genome assembly of the black rat, 67 ancient black rat mitogenomes and 36 ancient nuclear genomes from sites spanning the 1st-17th centuries CE in Europe and North Africa. Analyses of mitochondrial DNA confirm that black rats were introduced into the Mediterranean and Europe from Southwest Asia. Genomic analyses of the ancient rats reveal a population turnover in temperate Europe between the 6th and 10th centuries CE, coincident with an archaeologically attested decline in the black rat population. The near disappearance and re-emergence of black rats in Europe may have been the result of the breakdown of the Roman Empire, the First Plague Pandemic, and/or post-Roman climatic cooling.

Recent Efforts to Recover Armeria berlengensis, an Endemic Species from Berlengas Archipelago, Portugal

Berlengas archipelago is a UNESCO world heritage site and the only location where Armeria berlengensis is found. This species faces various threats, namely, human disturbance, the presence of Carpobrotus edulis, yellow-legged gull, common-rabbit, and black-rat populations. Thus, exclusion areas were installed, which blocked the access of most Gulls, aiming to promote the recovery of A. berlengensis. Additionally, rabbits and rats were removed from the island. After six years of surveys, there has been an increase in the number of individuals of A. berlengensis in the exclusion areas, and a clear shift in the size structure of the A. berlengensis population. Significant changes in the height and diameter of the individuals were also noted. These findings indicate that the population of A. berlengensis is changing and becoming a healthier population. Principal component analysis results show a straightforward dissimilarity between the areas with A. berlengensis and those without the species and allowed the clustering of two groups: the rupicolous species and the nitrophilous species. A. berlengensis produces few seeds (seed set 3.4%), which raises concern regarding the long-term survival of the species. Thus, further conservation efforts must be implemented, such as the control of invasive species, gulls, and ruderals, to allow for the recovery of A. berlengensis.