The genomic landscape of contemporary western Remote Oceanians

The Vanuatu archipelago served as a gateway to Remote Oceania during one of the most extensive human migrations to uninhabited lands around 3,200 years ago. Ancient DNA studies suggest an initial settlement by East Asian-related peoples that was quickly followed by the arrival of Papuan-related populations, leading to a major population turnover. Yet, there is uncertainty over the population processes and the sociocultural factors that have shaped the genomic diversity of ni-Vanuatu, who present nowadays among the world's highest linguistic and cultural diversity. Here, we report genome-wide data for 1,433 contemporary ni-Vanuatu from 29 different islands, including 287 couples. We find that ni-Vanuatu derive their East Asian- and Papuan-related ancestry from the same source populations and descend from relatively synchronous admixture events that occurred around 1,700-2,300 years ago, indicating a peopling history common to all the archipelago. However, our analyses reveal that the Papuan population turnover was geographically uneven, and that the genetic contribution of Papuan-related peoples was male-biased. Furthermore, we detect Polynesian ancestry arriving around 600-1,000 years ago to South Vanuatu, and map its distribution to both Polynesian- and non-Polynesian-speaking islands. Lastly, we provide evidence for a tendency of spouses to carry similar genetic ancestry, when accounting for relatedness avoidance. The signal is not driven by strong genetic effects of specific loci or trait-associated variants, suggesting that it results instead from social assortative mating. Altogether, our findings provide insight into both the genetic history of ni-Vanuatu populations and how sociocultural processes have shaped the diversity of their genomes.

Cumulative cultural evolution, population structure and the origin of combinatoriality in human language

Language is the primary repository and mediator of human collective knowledge. A central question for evolutionary linguistics is the origin of the combinatorial structure of language (sometimes referred to as duality of patterning), one of language’s basic design features. Emerging sign languages provide a promising arena to study the emergence of language properties. Many, but not all such sign languages exhibit combinatoriality, which generates testable hypotheses about its source. We hypothesize that combinatoriality is the inevitable result of learning biases in cultural transmission, and that population structure explains differences across languages. We construct an agent-based model with population turnover. Bayesian learning agents with a prior preference for compressible languages (modelling a pressure for language learnability) communicate in pairs under pressure to reduce ambiguity. We include two transmission conditions: agents learn the language either from the oldest agent or from an agent in the middle of their lifespan. Results suggest that (1) combinatoriality emerges during iterated cultural transmission under concurrent pressures for simplicity and expressivity and (2) population dynamics affect the rate of evolution, which is faster when agents learn from other learners than when they learn from old individuals. This may explain its absence in some emerging sign languages. We discuss the consequences of this finding for cultural evolution, highlighting the interplay of population-level, functional and cognitive factors. This article is part of a discussion meeting issue ‘The emergence of collective knowledge and cumulative culture in animals, humans and machines’.

Demography of a Eurasian lynx (Lynx lynx) population within a strictly protected area in Central Europe

Large carnivores promote crucial ecosystem processes but are increasingly threatened by human persecution and habitat destruction. Successful conservation of this guild requires information on long-term population dynamics obtained through demographic surveys. We used camera traps to monitor Eurasian lynx between 2009 and 2018 in a strictly protected area in the Bohemian Forest Ecosystem, located in the core of the distribution of the Bohemian–Bavarian–Austrian lynx population. Thereby, we estimated sex-specific demographic parameters using spatial capture–recapture (SCR) models. Over 48,677 trap nights, we detected 65 unique lynx individuals. Density increased from 0.69 to 1.33 and from 1.09 to 2.35 individuals/100 km2 for open and closed population SCR models, respectively, with corresponding positive population growth rates (mean = 1.06). Estimated yearly sex-specific survival probabilities for the entire monitoring period were high (females 82%, males 90%) and per capita recruitment rate was low (females 12%, males 9%), indicating a low yearly population turnover. We ascertained an average number of recruits of 1.97 and a generation time of 2.64 years when considering resident reproducing females. We confirmed that reproduction in the study area took place successfully every year. Despite the overall increase in local lynx densities, the number of detected family groups remained constant throughout the study period. These results indicated that the strictly protected study area acts as a source for the multi-use landscapes in its surroundings. In this first open population SCR study on lynx, we provide sex-specific demographic parameters that are fundamental information for lynx management in the study area as well as in similar contexts Europe-wide.

Cultural conformity and persistence in Dickcissel song are higher in locations in which males show high site fidelity

Dickcissel (Spiza americana) males occupying territories in cropland sites produced songs that were less similar on average to other Dickcissel songs in their neighborhood than did Dickcissels living in grasslands, where conformity to the local vocal culture was higher. Further, Dickcissel vocal culture changed more quickly over time in cropland sites relative to grassland sites. These differences may have resulted from the lower site fidelity we observed in Dickcissel males in cropland sites relative to grassland sites. We expected this link with site fidelity because we hypothesized that conformity to local culture in Oscine songbirds and the persistence of culture over time and space are promoted by habitats that facilitate stable populations. In contrast, sites in which habitat features cause rapid population turnover provide more territory vacancies and so more opportunities for colonization. Colonization should drive cultural change, either through adult colonists importing foreign cultural variants or young colonists making errors as they learn the local song. This potential link between population turnover and cultural stability may apply to animal cultures more broadly and so may be a fruitful area for further research. Besides the link between site fidelity and cultural change over time, we also investigated the possibility that habitats with different levels of site fidelity might show differences in the spatial scale of song similarity. However, we found no evidence of such a difference. Finally, although our conclusions regarding conformity and change in vocal culture were based on many recorded songs, automated assessments of song similarity imprecisely estimated the overall degree of song similarity. Thus, we may have underestimated the strength of the effects of time and distance on song similarity.

Dynamic changes in genomic and social structures in third millennium BCE central Europe

Europe’s prehistory oversaw dynamic and complex interactions of diverse societies, hitherto unexplored at detailed regional scales. Studying 271 human genomes dated ~4900 to 1600 BCE from the European heartland, Bohemia, we reveal unprecedented genetic changes and social processes. Major migrations preceded the arrival of “steppe” ancestry, and at ~2800 BCE, three genetically and culturally differentiated groups coexisted. Corded Ware appeared by 2900 BCE, were initially genetically diverse, did not derive all steppe ancestry from known Yamnaya, and assimilated females of diverse backgrounds. Both Corded Ware and Bell Beaker groups underwent dynamic changes, involving sharp reductions and complete replacements of Y-chromosomal diversity at ~2600 and ~2400 BCE, respectively, the latter accompanied by increased Neolithic-like ancestry. The Bronze Age saw new social organization emerge amid a ≥40% population turnover.

Demographic Instability as a Barrier to Remote Economic Development in the North: Are Cities the Answer?

Remote and sparsely populated northern peripheries in Australia, Europe and North America experience high rates of population turnover and struggle to recruit and retain populations. There has been discussion about the extent to which their larger urban centres may be key to navigating common ‘boom and bust’ cycles, thus contributing to more stable and resilient demographic and economic development in their jurisdictions. This paper examines the population development in twelve remote northern jurisdictions dominated by a large city, comparing urban and regional growth patterns around periods of economic boom and bust since 1990. It was expected that periods of high population growth would be initially led by regional areas where resource projects are commonly located, but that the cities would ultimately benefit more from high growth periods and suffer less from periods of low population growth. It was also expected that cities would retain key populations better than regions because of a growing global urban preference. Results suggest that regional areas did grow more at the start of high growth periods, but there was no universal experience of higher city growth throughout the two boom and bust cycles. Rather, each city and region had unique growth pattern properties. Cities must not be assumed a priori to be the drivers of demographic development, but attention needs to be paid to what types of cities promote less volatile growth and development potential in the regions.

Population turnover facilitates cultural selection for efficiency in birds

Culture, defined as socially transmitted information and behaviors that are shared in groups and persist over time, is increasingly accepted to occur across a wide range of taxa and behavioral domains. While persistent, cultural traits are not necessarily static, and their distribution can change in frequency and type in response to selective pressures, analogous to that of genetic alleles. This has lead to the treatment of culture as an evolutionary process, with cultural evolutionary theory arguing that culture exhibits the three fundamental components of Darwinian evolution: variation, competition, and inheritance. Selection for more efficient behaviors over alternatives is a crucial component of cumulative cultural evolution, yet our understanding of how and when such cultural selection occurs in non-human animals is limited. We performed a cultural diffusion experiment using 18 captive populations of wild-caught great tits (Parus major) to ask whether more efficient foraging traditions are selected for, and whether this process is affected by a fundamental demographic process—population turnover. Our results showed that gradual replacement of individuals with naive immigrants greatly increased the probability that a more efficient behavior invaded a population’s cultural repertoire and out-competed an established inefficient behavior. Fine-scale, automated behavioral tracking revealed that turnover did not increase innovation rates, but instead acted on adoption rates, as immigrants disproportionately sampled novel, efficient behaviors relative to available social information. These results provide strong evidence for cultural selection for efficiency in animals, and highlight the mechanism that links population turnover to this process.

Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history

The distribution of the black rat (Rattus rattus) has been heavily influenced by its association with humans. The dispersal history of this non-native commensal rodent across Europe, however, remains poorly understood, and different introductions may have occurred during the Roman and medieval periods. Here, in order to reconstruct the population history of European black rats, we generated a de novo genome assembly of the black rat, 67 ancient black rat mitogenomes and 36 ancient nuclear genomes from sites spanning the 1st-17th centuries CE in Europe and North Africa. Analyses of mitochondrial DNA confirm that black rats were introduced into the Mediterranean and Europe from Southwest Asia. Genomic analyses of the ancient rats reveal a population turnover in temperate Europe between the 6th and 10th centuries CE, coincident with an archaeologically attested decline in the black rat population. The near disappearance and re-emergence of black rats in Europe may have been the result of the breakdown of the Roman Empire, the First Plague Pandemic, and/or post-Roman climatic cooling.