A novel mechanism for the loss of mRNA activity in lipid nanoparticle delivery systems

Lipid nanoparticle (LNP)-formulated mRNA vaccines were rapidly developed and deployed in response to the SARS-CoV-2 pandemic. Due to the labile nature of mRNA, identifying impurities that could affect product stability and efficacy is crucial to the long-term use of nucleic-acid based medicines. Herein, reversed-phase ion pair high performance liquid chromatography (RP-IP HPLC) was used to identify a class of impurity formed through lipid:mRNA reactions; such reactions are typically undetectable by traditional mRNA purity analytical techniques. The identified modifications render the mRNA untranslatable, leading to loss of protein expression. Specifically, electrophilic impurities derived from the ionizable cationic lipid component are shown to be responsible. Mechanisms implicated in the formation of reactive species include oxidation and subsequent hydrolysis of the tertiary amine. It thus remains critical to ensure robust analytical methods and stringent manufacturing control to ensure mRNA stability and high activity in LNP delivery systems.

A novel mechanism for the loss of mRNA activity in lipid nanoparticle delivery systems.

Lipid nanoparticle (LNP)-formulated mRNA vaccines were rapidly developed and deployed in response to the SARS-CoV-2 pandemic. Due to the labile nature of mRNA, identifying impurities that could affect product stability and efficacy is crucial to the long-term use of nucleic-acid based medicines. Herein reversed phase ion pair high performance liquid chromatography (RP-IP HPLC) was used to identify a class of impurity formed through lipid:mRNA reactions; such reactions are typically undetectable by traditional mRNA purity analytical techniques. The identified modifications render the mRNA untranslatable, leading to loss of protein expression. Specifically, an electrophilic impurity derived from the ionizable cationic lipid component is shown to be responsible. Mechanisms implicated in the formation of reactive species include oxidation and subsequent hydrolysis of the tertiary amine. It thus remains critical to ensure robust analytical methods and stringent manufacturing control to ensure mRNA stability and high activity in LNP delivery systems.

Reactive uptake of N2O5 by atmospheric aerosol is dominated by interfacial processes

Nitrogen oxides are removed from the troposphere through the reactive uptake of N2O5 into aqueous aerosol. This process is thought to occur within the bulk of an aerosol, through solvation and subsequent hydrolysis. However, this perspective is difficult to reconcile with field measurements and cannot be verified directly because of the fast reaction kinetics of N2O5. Here, we use molecular simulations, including reactive potentials and importance sampling, to study the uptake of N2O5 into an aqueous aerosol. Rather than being mediated by the bulk, uptake is dominated by interfacial processes due to facile hydrolysis at the liquid-vapor interface and competitive reevaporation. With this molecular information, we propose an alternative interfacial reactive uptake model consistent with existing experimental observations.

Simple Synthesis of Substituted 3-Hydroxyfuran-2(5H)-ones

A convenient and facile approach to functionalized 4-substituted 3,5-dihydroxy-5-(trichloromethyl)furan-2(5H)-ones was developed. This method is based on regioselective synthesis of novel furan-2,3-diones containing the trichloromethyl group and subsequent hydrolysis. The structures of compounds were unambiguously confirmed by single-crystal X-ray diffraction.

p67: a cryptic lysosomal hydrolase in Trypanosoma brucei?

p67 is a type I transmembrane glycoprotein of the terminal lysosome of African trypanosomes. Its biosynthesis involves transport of an initial gp100 ER precursor to the lysosome, followed by cleavage to N-terminal (gp32) and C-terminal (gp42) subunits that remain non-covalently associated. p67 knockdown is lethal, but the only overt phenotype is an enlarged lysosome (~250 to >1000 nm). Orthologues have been characterized in Dictyostelium and mammals. These have processing pathways similar to p67, and are thought to have phospholipase B-like (PLBL) activity. The mouse PLBD2 crystal structure revealed that the PLBLs represent a subgroup of the larger N-terminal nucleophile (NTN) superfamily, all of which are hydrolases. NTNs activate by internal autocleavage mediated by a nucleophilic residue, i.e. Cys, Ser or Thr, on the upstream peptide bond to form N-terminal α (gp32) and C-terminal β (gp42) subunits that remain non-covalently associated. The N-terminal residue of the β subunit is then catalytic in subsequent hydrolysis reactions. All PLBLs have a conserved Cys/Ser dipeptide at the α/β junction (Cys241/Ser242 in p67), mutation of which renders p67 non-functional in RNAi rescue assays. p67 orthologues are found in many clades of parasitic protozoa, thus p67 is the founding member of a group of hydrolases that likely play a role broadly in the pathogenesis of parasitic infections.

S-Adenosylmethionine Deficiency and Brain Accumulation of S-Adenosylhomocysteine in Thioacetamide-Induced Acute Liver Failure

Background: Acute liver failure (ALF) impairs cerebral function and induces hepatic encephalopathy (HE) due to the accumulation of neurotoxic and neuroactive substances in the brain. Cerebral oxidative stress (OS), under control of the glutathione-based defense system, contributes to the HE pathogenesis. Glutathione synthesis is regulated by cysteine synthesized from homocysteine via the transsulfuration pathway present in the brain. The transsulfuration-transmethylation interdependence is controlled by a methyl group donor, S-adenosylmethionine (AdoMet) conversion to S-adenosylhomocysteine (AdoHcy), whose removal by subsequent hydrolysis to homocysteine counteract AdoHcy accumulation-induced OS and excitotoxicity. Methods: Rats received three consecutive intraperitoneal injections of thioacetamide (TAA) at 24 h intervals. We measured AdoMet and AdoHcy concentrations by HPLC-FD, glutathione (GSH/GSSG) ratio (Quantification kit). Results: AdoMet/AdoHcy ratio was reduced in the brain but not in the liver. The total glutathione level and GSH/GSSG ratio, decreased in TAA rats, were restored by AdoMet treatment. Conclusion: Data indicate that disturbance of redox homeostasis caused by AdoHcy in the TAA rat brain may represent a deleterious mechanism of brain damage in HE. The correction of the GSH/GSSG ratio following AdoMet administration indicates its therapeutic value in maintaining cellular redox potential in the cerebral cortex of ALF rats.

HYDROBORATION-OXIDATION OF GLYCIRRETHIC ACID’S DERIVATIVES

The hydroboration-oxidation reaction is widely used in the chemistry of terpenoids both for proving the structure of new compounds isolated from natural raw materials and for the directed synthesis of low molecular weight bioregulators. Moreover, most of the known examples affect mono- and sesquiterpenes, a much smaller number - for di- and triterpenoids: most are represented by hydroboration-oxidation of localized double bonds, examples for conjugated dienes are limited only by hydroboration-oxidation of cis-eudesma-6,11-diene, abietic acid and its methyl ester. We found that the reduction of the pentacyclic triterpenoid – glycyrrhetate methyl ester – diisobutylaluminium hydride in methylene chloride at -78 ° С and subsequent hydrolysis in the presence of ammonium chloride proceeds with the formation of 3β,30-dihydroxy-18βH-olean-9(11),12(13)-diene with a yield of 90%. It was shown that the hydroboration of the 1,3-diene system in it with a 3.3 molar excess of diborane in tetrahydrofuran is accompanied by the restoration of the carboxyl function, and after oxidation with the hydrogen peroxide-sodium acetate system of the organoboranes formed, three alcohols are mixed (2 : 1 : 1): 3β,11,30-trihydroxy-18βH-olean-12(13)-ene, 3β,12,30-trihydroxy-18βH-olean-9(11)-ene and 3β,9,30-trihydroxy-18βH-olean-12 (13)-ene, respectively. A similar mixture of triols was also obtained by hydroboration-oxidation of 3β-hydroxy-18βH-olean-9(11),12(13)-diene-30-oic acid. The hydroboration-oxidation reactions of 3β,30-dihydroxy-18βH-olean-9(11),12(13)-diene or the corresponding 30th acid proceed as monoprocesses predominantly at 9(11) double bonds.

Directed Evolution of Clostridium thermocellum β-Glucosidase A Towards Enhanced Thermostability

β-Glucosidases are key enzymes in the process of cellulose utilization. It is the last enzyme in the cellulose hydrolysis chain, which converts cellobiose to glucose. Since cellobiose is known to have a feedback inhibitory effect on a variety of cellulases, β-glucosidase can prevent this inhibition by hydrolyzing cellobiose to non-inhibitory glucose. While the optimal temperature of the Clostridium thermocellum cellulosome is 70 °C, C. thermocellum β-glucosidase A is almost inactive at such high temperatures. Thus, in the current study, a random mutagenesis directed evolutionary approach was conducted to produce a thermostable mutant with Kcat and Km, similar to those of the wild-type enzyme. The resultant mutant contained two mutations, A17S and K268N, but only the former was found to affect thermostability, whereby the inflection temperature (Ti) was increased by 6.4 °C. A17 is located near the central cavity of the native enzyme. Interestingly, multiple alignments revealed that position 17 is relatively conserved, whereby alanine is replaced only by serine. Upon the addition of the thermostable mutant to the C. thermocellum secretome for subsequent hydrolysis of microcrystalline cellulose at 70 °C, a higher soluble glucose yield (243%) was obtained compared to the activity of the secretome supplemented with the wild-type enzyme.

Dissolved fluoride removal by OCP, a precursor of apatite

The consumption of water with fluoride concentration higher than 1.5 mg/L (WHO recommended limit) is recognized to cause serious diseases. Fluoride removal from natural contaminated waters is a worldwide priority for more than 200 million people. The octacalcium phosphate (OCP), a mineralogical precursor of bio-apatite, is here tested as a fluoride remover. A new two-step method for the synthesis of OCP is proposed; it consists of 1) synthesis of brushite from calcium carbonate and phosphoric acid and, 2) subsequent hydrolysis of brushite. Fluoride removal experiments were performed in batch-mode using 200 mg of OCP in 50 ml solutions with different initial concentrations of fluoride (from 40 to 140 mg/L). Most of fluoride is removed within the first two hours, whereas the WHO limit of 1.5 mg/L is reached within a minimum of 3 hours for a starting Fconcentration of 40 mg/L, and in about 12 hours for a starting F-concentration of 80 mg/L. One gram of OCP can remove up to 26 mg of fluoride. The pH of the solution after the treatment is within the range of drinking water. XRD characterization of the solid phases, before and after the experiments, indicates that OCP transforms into fluorapatite via Fremoval from solution.