Ciliated protozoa from industrial WWTP activated sludge: a biodiversity survey including trophic interactions and redescription of Bakuella subtropica (Spirotrichea, Hypotrichia) according to Next Generation Taxonomy

Optimization of wastewater treatment with biological processes is a fundamental challenge of modern society. During past years new technologies have been developed for the purpose and prokaryotic organisms involved in the process extensively investigated. Nevertheless, relatively few studies so far analysed the protozoan community in these systems using modern integrative approaches, despite its obvious role in shaping ecological dynamics and, possibly, process efficiency. In the present study, we characterized the ciliate community in biological reactors of an Italian industrial (tannery) wastewater treatment plant (WWTP) applying modified Ludzack-Ettinger (MLE) process. This plant is characterized by moderate salinity, high solids retention time and high concentration of organic compounds, including a significant recalcitrant fraction. We performed the morphological and 18S rDNA characterizations of almost all the 21 ciliates retrieved along a one-year sampling period, and provided preliminary data on species occurrence, community dynamics, and trophic interactions. Only 16 species were observed on the sample collection day and most of them had an occurrence higher than 50%. The most frequently occurring and highly abundant organisms were Aspidisca cf. cicada, Euplotes spp., Paramecium calkinsi, and Phialina sp. Cyclidium cf. marinum was only found on a single date and its presence was possibly related to a summer break-induced perturbation. All the species showed the capability to survive the short oxic/anoxic cycling typical of the studied WWTP process. Intriguingly, some of them (i.e., Bakuella subtropica and Trochiliopsis australis) turned out to be species isolated from brackish natural environment rich in organic load as well. As for B. subtropica, we provided an emended redescription according to the most recent taxonomy standards that include also mitogenomic sequencing.

Integrated analysis of plant gene expression and bacterial and protozoan community composition reveals changes related to root zonation, root cap and root hair formation

<p>This study was conducted within the framework of the DFG project SPP2089 “Rhizosphere Spatiotemporal Organization – a Key to Rhizosphere Functions” (project number 403641192).</p><p>As plant roots grow into the soil, the formation of biological gradients occurs at different spatial scales. It has been shown that plants recruit specific subsets of the soil bacterial community at their roots through excretion of mucilage at root tips and exudates at the sites of root hair formation. The promotion of or defense against certain bacterial taxa is also reflected in the composition of the protist communities that feed on bacteria.</p><p>Using high-throughput sequencing methods, we investigated emerging patterns in root gene expression in relation to bacterial and protozoan community structures. We found highly distinct root region specific patterns relating to differential root gene expression relating to growth, defense and transporter activity, as well as bacterial and protist (cercozoan) diversity. Root cap removal led to differently composed microbial communities, as well as a regulation of root genes relating to stress and defense. The lack of root hairs was only reflected in the amount of microbial carbon in soil and a small number of differentially expressed genes involved in cell wall processes.</p><p>We could show that the rhizosphere microbiome, is as dynamic as its environment. Root regions differentially affect microbial communities, which is also reflected in the expression of plant genes of categories relating to defense, immunity and stress. Our findings will further enhance our understanding of microbial root interactions at single root scale.</p>

Structure and dynamics of the protoplankton community in an environmentally protected urban stream

We aimed to investigate spatial and temporal scales, abundance, and factors that structure the communities of protozoans in a tropical urban stream. Methods: Samples of water for analysis of biological communities (testate amoebae, ciliates and bacteria) and limnological variables were taken in the Mandacaru stream located in the Conservation Unit of Parque do Cinquentenário, in the city of Maringá, Paraná State, Brazil, in two hydrological periods (dry and rainy). We calculated the Water Quality Index (WQI) composed by nine parameters of water quality (dissolved oxygen, thermotolerant coliforms, pH, BOD, water temperature, total nitrogen, total phosphorous, turbidity, and total solids), Trophic State Index (TSI) for phosphorous and we used a Redundancy Analysis (RDA) to verify the influence of environmental variables in the protozoan community. Results: The WQI showed that water quality was considered good in some points and considered bad in other points. The TSI for phosphorus classified the stream as mesotrophic in the majority of sampled sites points (mean between 53.09 and 58.35). We identified 19 taxa of testate amoebae, belonging to six families, being Difflugiidae, Centropyxidae, and Arcellidae those with more species and 71 infrageneric taxa of ciliates, distributed in 12 orders being Peniculida the most representative order, followed by Euplotida. According to RDA analysis, samples of the dry period were characterized by higher values of bacteria density and concentrations of chlorophyll-a, total phosphorous, and total nitrogen. Ciliates and testate amoebae presented higher abundance values in some of the months characterized by higher precipitation and in conditions of higher system productivity. Conclusion: we may conclude that the Mandacaru stream, although strongly influenced by anthropic action, still presents an acceptable water quality. Lastly, we emphasize that protists abundance was strongly influenced by system productivity. This was evidenced by elevated protozoan densities where there was higher primary and bacterial productivity. Thus, these organisms must be considered in studies that aim at the identification of organisms that may indicate anthropic impacts and environmental quality.

Unravelling the importance of the eukaryotic and bacterial communities and their relationship with Legionella spp. ecology in cooling towers: a complex network

Background Cooling towers are a major source of large community-associated outbreaks of Legionnaires’ disease, a severe pneumonia. This disease is contracted when inhaling aerosols that are contaminated with bacteria from the genus Legionella, most importantly Legionella pneumophila. How cooling towers support the growth of this bacterium is still not well understood. As Legionella species are intracellular parasites of protozoa, it is assumed that protozoan community in cooling towers play an important role in Legionella ecology and outbreaks. However, the exact mechanism of how the eukaryotic community contributes to Legionella ecology is still unclear. Therefore, we used 18S rRNA gene amplicon sequencing to characterize the eukaryotic communities of 18 different cooling towers. The data from the eukaryotic community was then analysed with the bacterial community of the same towers in order to understand how each community could affect Legionella spp. ecology in cooling towers. Results We identified several microbial groups in the cooling tower ecosystem associated with Legionella spp. that suggest the presence of a microbial loop in these systems. Dissolved organic carbon was shown to be a major factor in shaping the eukaryotic community and may be an important factor for Legionella ecology. Network analysis, based on co-occurrence, revealed that Legionella was correlated with a number of different organisms. Out of these, the bacterial genus Brevundimonas and the ciliate class Oligohymenophorea were shown, through in vitro experiments, to stimulate the growth of L. pneumophila through direct and indirect mechanisms. Conclusion Our results suggest that Legionella ecology depends on the host community, including ciliates and on several groups of organisms that contribute to its survival and growth in the cooling tower ecosystem. These findings further support the idea that some cooling tower microbiomes may promote the survival and growth of Legionella better than others.

Variations in the community structure of biofilm-dwelling protozoa at different depths in coastal waters of the Yellow Sea, northern China

Biofilm-dwelling protozoa are a primary component of microbiota and play important roles in the functioning of microbial food webs such as the mediation of carbon and energy flux from plankton to benthos in marine ecosystems. To demonstrate the vertical pattern of the protozoan communities, a 1-month baseline survey was carried out in coastal waters of the Yellow Sea, northern China. A total of 40 samples were collected using glass slides as artificial substrates at four depths: 1, 2, 3.5 and 5 m. A total of 50 species were identified, comprising seven dominant and eight commonly distributed species. Species richness and individual species abundances showed a clear decreasing trend down the water column from 1 to 5 m, although the former peaked at a depth of 2 m. Multivariate approaches revealed that protozoan community structure differed significantly among the four depths, except for those at 2 and 3.5 m. Maximum values of species richness, diversity and evenness generally decreased with depth although they peaked at either 2 or 3.5 m. These results suggest that water depth may significantly shape the community patterns of biofilm-dwelling protozoa in marine ecosystems.

A community-based approach to identifying defence of microalgae against protozoan grazing

It has increasingly been recognized that defence of microalgae against predator grazing is a passive response to increase algal population density by excreting chemicals with a change in physical properties. As common biological pollutants in the cultivation of the microalgae, the community-based method was used to identify the ability of two microalgae, Chlorella sp. and Nannochloropsis oceanica, to defend against protozoan grazing. Mature protozoan samples with 14-day age were collected, using microscopy glass slides, in coastal waters of the Yellow Sea, northern China. For both microalgae, a gradient of concentrations was designed as 100 (control), 104, 105, 106 and 107 cell ml−1, respectively. Results showed that both test algal species represented strong defence effects on protozoan grazing, especially at high density levels. Species richness, abundance and taxonomic distinctness of the protozoan assemblages showed a sharp decrease at high concentration level (107 cell ml−1) of both algae. A significant variation in protozoan community structures was found to be driven by the gradient of the algal concentrations. The paired taxonomic distinctness indices of the protozoan communities showed an increasing trend of departure from the expected taxonomic pattern with increase of algal concentrations. Based on the results, we suggest that the community-based bioassay might be used as a feasible tool for identifying defence against protozoan grazing of microalgae.

The Study on Protozoan Community Structure of Zhalong Wetland

The zhalong wetland water environment is an important part of the ecological environment, The protozoan community structure of Zhalong wetland was researched in this article. We can monitoring water pollution degree through the analysis of protozoan population, this research investigated protozoa population structure in qiqihar zhalong wetland through the PFU method and direct mining water in water samples, and analyse the physiological and biochemical parameters to assess the quality of water quality changes during May-October in 2012, the result show that 74 protozoa were observed including ciliate fleshiness shrimp center, flagellate less. In comparison with clean water inside, can use light and feed on algae native species number is more, different water quality in different conditions, protozoa composition has a very significant difference.