In vitro proton magnetic resonance spectroscopy at 14T for benign and malignant ovary: Part I, signal processing by the nonparametric fast Padé transform

The present study deals with two different kinds of time signals, encoded by in vitro proton magnetic resonance spectroscopy (MRS) with a high external static magnetic field, 14.1T (Bruker 600 MHz spectrometer). These time signals originate from the specific biofluid samples taken from two patients, one with benign and the other with malignant ovarian cysts. The latter two diagnoses have been made by histopathologic analyses of the samples. Histopathology is the diagnostic gold standard in medicine. The obtained results from signal processing by the nonparametric derivative fast Padé transform (dFPT) show that a number of resonances assignable to known metabolites are considerably more intense in the malignant than in the benign specimens. Such conclusions from the dFPT include the recognized cancer biomarkers, lactic acid and choline-containing compounds. For example, the peak height ratio for the malignant-to-benign samples is about 18 for lactate, Lac. This applies equally to doublet Lac(d) and quartet Lac(q) resonating near 1.41 and 4.36 ppm (parts per million), respectively. For the choline-containing conglomerate (3.19-3.23 ppm), the dFPT with already low-derivative orders (2nd, 3rd) succeeds in clearly separating the three singlet component resonances, free choline Cho(s), phosphocholine PC(s) and glycerophosphocholine GPC(s). These constituents of total choline, tCho, are of critical diagnostic relevance because the increased levels, particularly of PC(s) and GPC(s), are an indicator of a malignant transformation. It is gratifying that signal processing by the dFPT, as a shape estimator, coheres with the mentioned histopathology findings of the two samples. A very large number of resonances is identifiable and quantifiable by the nonparametric dFPT, including those associated with the diagnostically most important low molecular weight metabolites. This is expediently feasible by the automated sequential visualization and quantification that separate and isolate sharp resonances first and subsequently tackle broad macromolecular lineshape profiles. Such a stepwise workflow is not based on subtracting nor annulling any part of the spectrum, in sharp contrast to controversial customary practice in the MRS literature. Rather, sequential estimation exploits the chief derivative feature, which is a faster peak height increase of the thin than of the wide resonances. This is how the dFPT simultaneously improves resolution (linewidth narrowing) and reduces noise (background flattening). Such a twofold achievement makes the dFPT-based proton MRS a high throughput strategy in tumor diagnostics as hundreds of metabolites can be visualized/quantified to offer the opportunity for a possible expansion of the existing list of a handful of cancer biomarkers.

DAFI

WiFi-based Device-free Passive (DfP) indoor localization systems liberate their users from carrying dedicated sensors or smartphones, and thus provide a non-intrusive and pleasant experience. Although existing fingerprint-based systems achieve sub-meter-level localization accuracy by training location classifiers/regressors on WiFi signal fingerprints, they are usually vulnerable to small variations in an environment. A daily change, e.g., displacement of a chair, may cause a big inconsistency between the recorded fingerprints and the real-time signals, leading to significant localization errors. In this paper, we introduce a Domain Adaptation WiFi (DAFI) localization approach to address the problem. DAFI formulates this fingerprint inconsistency issue as a domain adaptation problem, where the original environment is the source domain and the changed environment is the target domain. Directly applying existing domain adaptation methods to our specific problem is challenging, since it is generally hard to distinguish the variations in the different WiFi domains (i.e., signal changes caused by different environmental variations). DAFI embraces the following techniques to tackle this challenge. 1) DAFI aligns both marginal and conditional distributions of features in different domains. 2) Inside the target domain, DAFI squeezes the marginal distribution of every class to be more concentrated at its center. 3) Between two domains, DAFI conducts fine-grained alignment by forcing every target-domain class to better align with its source-domain counterpart. By doing these, DAFI outperforms the state of the art by up to 14.2% in real-world experiments.

Integrating neural and ocular attention reorienting signals in virtual reality

Objective. Reorienting is central to how humans direct attention to different stimuli in their environment. Previous studies typically employ well-controlled paradigms with limited eye and head movements to study the neural and physiological processes underlying attention reorienting. Here, we aim to better understand the relationship between gaze and attention reorienting using a naturalistic virtual reality (VR)-based target detection paradigm. Approach. Subjects were navigated through a city and instructed to count the number of targets that appeared on the street. Subjects performed the task in a fixed condition with no head movement and in a free condition where head movements were allowed. Electroencephalography (EEG), gaze and pupil data were collected. To investigate how neural and physiological reorienting signals are distributed across different gaze events, we used hierarchical discriminant component analysis (HDCA) to identify EEG and pupil-based discriminating components. Mixedeffects general linear models (GLM) were used to determine the correlation between these discriminating components and the different gaze events time. HDCA was also used to combine EEG, pupil and dwell time signals to classify reorienting events. Main results. In both EEG and pupil, dwell time contributes most significantly to the reorienting signals. However, when dwell times were orthogonalized against other gaze events, the distributions of the reorienting signals were different across the two modalities, with EEG reorienting signals leading that of the pupil reorienting signals. We also found that the hybrid classifier that integrates EEG, pupil and dwell time features detects the reorienting signals in both the fixed (AUC = 0.79) and the free (AUC = 0.77) condition. Significance. We show that the neural and ocular reorienting signals are distributed differently across gaze events when a subject is immersed in VR, but nevertheless can be captured and integrated to classify target vs. distractor objects to which the human subject orients.

Research on the Design of Digital Signal Processing Algorithm Based on Spark Parallel Calculation

Digital signal processing as a key and difficult point of network technology research and development, currently commonly used content such as LabVIEW. But from a practical point of view, while these techniques can be used to process real-time signals, they can’t handle historical offline data. The Spark parallel computing studied in this paper can be used to process offline signals. Therefore, on the basis of understanding the development trend of Spark parallel computing framework, the distributed Mallat algorithm is analyzed based on Spark parallel computing engine, and the application performance of the corresponding algorithm is verified.

FNS-parameterization of human magnetoencephalograms for the diagnosis of photosensitive epilepsy

This work presents the results of parameterization of magnetoencephalogram signals from healthy subjects and a patient with photosensitive epilepsy. Diagnostic criteria were established during the extraction of resonant and high-frequency (chaotic) components of the initial time signals. It is shown that an increase in the intensity of the chaotic components of the studied signals in the high-frequency region leads to a violation of cross-correlation relationships and a decrease in the level of manifestation of frequency-phase synchronization. The discovered signs of photosensitive epilepsy will contribute to the development of new methods for the diagnosis and medical control of this disease based on Flicker-Noise Spectroscopy.

Addendum to “The VIT Transform Approach to Discrete-Time Signals and Linear Time-Varying Systems”

This addendum contains clarifications and a sharpening of some of the results on the VIT transform framework developed in [1]. The focus is on the right-coefficient and left- coefficient forms of the transform, the extraction of a first-order term from a left polynomial fraction, and the application to linear time-varying systems.

A Contemporary Survey on Low Power, High Speed Comparators for Bio-Medical Applications

The analysis of biomedical signals performs an important role in figuring out numerous issues in clinical science. Also, the urge to track biomedical signals in fitness and well-being control is progressively growing with the multiplied occurrence of persistent sicknesses over the last decade. By nature, the most of the real-time signals are analog. Hence, an Analog to digital converter (ADC) is required to transform the signal. In ADC architecture, the comparator is the essential block that performs a vital role and consumes greater power in ADC design. Numerous architectures for comparators relate to biomedical programs are mentioned in recent days. In this paper, the exceptional latest techniques of comparator designs are discussed with their key capabilities in conjunction with pros and cons.

High-resolution at 3T for in vivo derivative NMR spectroscopy in medical diagnostics of ovarian tumor: exact quantification by shape estimations

Time signals are measured experimentally throughout sciences, technologies and industries. Of particular interest here is the focus on time signals encoded by means of magnetic resonance spectroscopy (MRS). The great majority of generic time signals are equivalent to auto-correlation functions from quantum physics. Therefore, a quantum-mechanical theory of measurements of encoded MRS time signals is achievable by performing quantum-mechanical spectral analysis. When time signals are measured, such an analysis becomes an inverse problem (harmonic inversion) with the task of reconstruction of the fundamental frequencies and the corresponding amplitudes. These complex-valued nodal parameters are the building blocks of the associated resonances in the frequency spectrum. Customarily, the MRS literature reports on fitting some ad hoc mathematical expressions to a set of resonances in a Fourier spectrum to extract their positions, widths and heights. Instead, an alternative would be to diagonalize the so-called data matrix with the signal points as its elements and to extract the resonance parameters without varying any adjusting, free constants as these would be absent altogether. Such a data matrix (the Hankel matrix) is from the category of the evolution matrix in the Schrödinger picture of quantum mechanics. Therefore, the spectrum of this matrix, i.e. the eigenvalues and the corresponding amplitudes, as the Cauchy residues (that are the squared projections of the full wave functions of the system onto the initial state) are equivalent to the sought resonance parameters, just mentioned. The lineshape profile of the frequency-dependent quantum-mechanical spectral envelope is given by the Heaviside partial fraction sum. Each term (i.e. every partial fraction) in this summation represents a component lineshape to be assigned to a given molecule (metabolite) in the tissue scanned by MRS. This is far reaching, since such a procedure allows reconstruction of the most basic quantum-mechanical entities, e.g. the total wave function of the investigated system and its ’Hamiltonian’ (a generator of the dynamics), directly from the encoded time signals. Since quantum mechanics operates with abstract objects, it can be applied to any system including living species. For example, time signals measured from the brain of a human being can be analyzed along these lines, as has actually been done e.g. by own our research. In this way, one can arrive at a quantum-mechanical description of the dynamics of vital organs of the patient by retrieving the interactions as the most important parts of various pathways of the tissue functions and metabolism. Of practical importance is that the outlined quantum-mechanical prediction of the frequency spectrum coincides with the Padé approximant, which is in signal processing alternatively called the fast Padé transform (FPT) for nonderivative estimations. Further, there is a novelty called the derivative fast Padé transform (dFPT). The FPT and dFPT passed the test of time with three fundamentally different time signals, synthesized (noise-free, noise-contaminated) as well as encoded from phantoms and from patients. Such systematics are necessary as they permit robust and reliable benchmarkings of the theory in a manner which can build confidence of the physician, while interpreting the patient’s data and making the appropriate diagnosis. In the present study, we pursue further this road paved earlier by applying the FPT and dFPT (both as shape and parameter estimators) to time signals encoded by in vivo proton MRS from an ovarian tumor. A clinical 3T scanner is used for encoding at a short echo time (30 ms) at which most resonances have not reached yet their decay mode and, as such, could be detected to assist with diagnostics. We have two goals, mathematical and clinical. First, we want to find out whether particularly the nonparametric dFPT, as a shape estimator, can accurately quantify. Secondly, we want to determine whether this processor can provide reliable information for evaluating an ovarian tumor. From the obtained results, it follows that both goals have met with success. The nonparametric dFPT, from its onset as a shape estimator, transformed itself into a parameter estimator. Its quantification capabilities are confirmed by reproducing the components reconstructed by the parametric dFPT. Thereby, fully quantified information is provided to such a precise extent that a large number of sharp resonances (more than 160) appear as being well isolated and, thus, assignable to the known metabolites with no ambiguities. Importantly, some of these metabolites are recognized cancer biomarkers (e.g. choline, phosphocholine, lactate). Also, broader resonances assigned to macromolecules are quantifiable by a sequential estimation (after subtracting the formerly quantified sharp resonances and processing the residual spectrum by the nonparametric dFPT). This is essential too as the presence of macromolecules in nonoderivative envelopes deceptively exaggerates the intensities of sharper resonances and, hence, can be misleading for diagnostics. The dFPT, as the quantification-equipped shape estimator, rules out such possibilities as wider resonances can be separately quantified. This, in turn, helps make adequate assessment of the true yield from sharp resonances assigned to metabolites of recognized diagnostic relevance.