Metagenomic Analysis Reveals New Microbiota Related to Fiber Digestion in Pigs

Making full use of high fiber and low-cost crop coproducts is helpful to alleviate the situation of people and livestock competing for crops. Digestion of dietary fibers in pigs is mainly through microbial fermentation in the large intestine. To reveal microbiota related to fiber digestion in pigs, fecal samples have been collected from 274 healthy female Suhuai pigs at 160 days of age under the same feeding conditions and have measured apparent neutral detergent fiber (NDF) and acid detergent fiber (ADF) digestibility. Samples from Suhuai pigs with extreme high and low apparent NDF digestibility and extreme high and low apparent ADF digestibility were subjected to shotgun metagenomic sequencing. At the species level, 62 microbial species in H_NDF group and 54 microbial species in H_ADF group were related to high fiber digestibility. Among them, Lachnospiraceae bacterium 3-1 and Alistipes sp. CAG:514 may be new types of microorganisms associated with fiber digestion. In addition, we found that more abundant GH5 and GH48 family (contribute to cellulose degradation) genes, GH39 and GH53 family (contribute to hemicellulose degradation) genes in microorganisms may contribute to the higher apparent NDF digestibility of pigs, and more abundant GH3 and GH9 family (contribute to cellulose degradation) genes in microorganisms may contribute to the higher apparent ADF digestibility of pigs. The abundance of AA4 family (helps in lignin degradation) genes in H_NDF and H_ADF groups was significantly higher than that in L_NDF and L_ADF groups, respectively (P < 0.05). Three pathways in H_NDF group and four pathways in H_ADF group are important pathways associated with degradation of non-starch polysaccharides, and their relative abundance is significantly higher than that in L_NDF and L_ADF groups, respectively. Gut microbiota of Suhuai pigs with high apparent fiber digestibility had higher abundance of genes and microbiota related to fiber digestion and may have stronger fiber digestion potential compared with low apparent fiber digestibility group. This study revealed that the characteristics of gut microbiota and microbial gene functions of pigs with high fiber apparent digestibility, which provided a theoretical basis and reference for further understanding the impact of gut microbiota on fiber digestibility of pigs.

Feeding Sheep Cobalt and Oregano Essential Oil Alone or in Combination on Ruminal Nutrient Digestibility, Fermentation, and Fiber Digestion Combined With Scanning Electron Microscopy

The feeding of Co lactate (Co), an essential oil blend (EO; oregano), or a combination of Co and EO (EOC) may improve nutrient digestion of corn silage-based rations. In four separate studies, Co, EO, or EOC was fed at 0, 4, and 7 g/days to nine rumen fistulated rams arranged in a replicated 3 × 3 Latin square design. The fourth study evaluated the carrier at 0, 4, and 7 g/day. In each ram, fresh ensiled corn silage, leaf, and husk were placed in individual nylon bags inserted through the ruminal cannula and removed after 48 h. Rams fed increasing carrier rates demonstrated similar (P > 0.10) nutrient digestibilities and ruminal pH and volatile fatty acid concentrations. Feeding Co at 4 and 7 g/day increased (P < 0.05) digestibility of DM (59.4, 63.9, and 62.4% for 0, 4, and 7 g/day, respectively), NDF (59.4, 63.9, and 62.4%), and hemicellulose (HC; 56.2, 63.6, and 65.9%) compared with rams fed 0 g/day, while CP digestibility (46.4, 49.9, and 57.8%) was improved (P < 0.05) in rams fed 7 g/day compared with those fed 0 and 4 g/day. Rams fed 4 g/day EO digested greater (P < 0.05) HC (64.1, 71.4, and 69.1%) than rams fed 0 g/day, while rams fed 7 g/day were intermediate and similar (P > 0.10). Rams fed the EOC combination at 4 and 7 g/day demonstrated greater (P < 0.05) digestibilities of DM (57.7, 60.0, and 60.0%), NDF (21.4, 28.8, and 27.7%), and ADF (24.3, 33.3, and 34.4%) than rams fed 0 g/day. The SEM and SM techniques visually demonstrated minor evidence of husk and leaf digestibility in rams across the three experiments when fed 0 g/day of Co, EO, or EOC; rams fed 4 g/day of Co, EO, or EOC exhibited varying visual signs of leaf digestion with some palisade tissue, spongy tissue, and whole vein structure remaining, while in rams fed 7 g/day, only the vein structure remained. Results demonstrated that feeding Co, EO, or EOC at 4 or 7 g/day enhanced ruminal nutrient digestion and fermentation parameters, which was visually confirmed via SEM and SM.

Digestive Adaptations of Both the Fore- and Hind-gut in a Temperate Colobine Monkey

Background: In mammal herbivores, the digestion of fiber usually occurs predominantly in either the foregut or in the hindgut. However, how both gut regions function synergistically in the digestion of fiber and other nutrients has rarely been reported in wild mammals. This requires an integrative study of host anatomy, physiology and gut microbiome. Colobine monkeys (Colobinae) are folivorous, with fiber fermentation primarily occurring in the foregut, with residual fermentation in the hindgut. For the few colobine species that live in temperate regions obtaining energy from fiber during winter is critical but the mechanisms enabling this remain unclear. Results: We studied microbial and morphological digestive adaptations of golden snub-nosed monkeys (GSMs), Rhinopithecus roxellana, a temperate forest colobine from central China. We tested for synergistic foregut and hindgut fiber digestion in a species that experiences high thermal energy demands while restricted to a fibrous, low-energy winter diet. We found that the GSM’s colon has a significantly greater volume than that of other foregut fermenting colobines, and both gut regions of GSMs are dominated by microbial taxa producing enzymes to enable active digestion of complex carbohydrates. The microbiomes of the fore- and hindgut differed significantly in composition and abundance. Although the expression of microbial gene functions for fiber digestion were higher in the foregut than in the hindgut, our microbiome analysis in conjunction with that for morphology, enzyme activity and fiber-protein digestion, suggests complementary fiber and protein metabolism in both gut regions. Conclusions: Our results support that both the GSM fore- and hindgut facilitate fiber digestion, with an enlarged colon consistent as an adaptation to accommodate high throughput of fiber-rich food during winter.

253 Impact of Corn Hybrid Selection for Fiber and Starch Traits on in Vivo Nutrient Digestion in Beef Cattle

Evaluation of corn silage digestibility is normally done using laboratory techniques to predict the performance if fed to cattle, which may or may not predict actual performance when fed to cattle. The objective of this study was to evaluate two Masters Choice corn silage hybrids previously selected for improved fiber and starch digestion on nutrient intake and digestion in cattle. In a 126-day digestion study, six ruminally fistulated beef steers were utilized in a 3×6 Latin rectangle design with three dietary treatments and six periods (21 days in length with 14 days of adaptation and 7 days of collection). Diets consisted of 80% corn silage (dry matter basis) of Masters Choice hybrid MCT6365 RIB (MC1; selected for greater fiber and starch digestion) and MCT6733 GT3000 (MC2; older hybrid selected for greater fiber digestion) and were compared to a conventional corn hybrid (CON; commonly grown in Eastern Nebraska). The remainder of the diet included 15% modified distillers grains plus solubles and 5% supplement. Corn silage hybrid did not impact dry matter or organic matter (OM) intake (P ≥ 0.68), but hybrid treatment impacted OM, starch, and energy digestibility (P < 0.02). Steers fed MC1 corn silage had greater (P < 0.01) total tract OM and energy digestibility, as well as digestible energy (DE, P = 0.02) content of the diet when compared to MC2, with steers fed CON being intermediate (P ≥ 0.09). Feeding MC1 also resulted in greater (P = 0.03) total tract starch digestibility than MC2, with no difference (P = 0.12) when compared to CON. Results indicated that feeding MC1 corn silage improved digestion and energy availability to the steers, which allowed for greater average daily gain and improved feed efficiency observed in the corresponding growing trial, while the opposite was true for MC2.

Effects of Orange Pulp Conservation Methods (Dehydrated or Ensiled Sun-Dried) on the Nutritional Value for Finishing Pigs and Implications on Potential Gaseous Emissions from Slurry

The inclusion of orange pulp (OP) in pig diets may promote the circular economy, but drying procedures might influence its nutritional value and environmental impact. The purpose of this study was to determine the energy value and nutrient digestibility of dehydrated (DOP) and ensiled sun dried (ESDOP) orange pulp. The potential ammonia (NH3) and methane (CH4) emissions derived from slurry were also measured. Digestible energies of 14.2 and 13.2 MJ/kg DM for DOP and ESDOP, respectively, were estimated by difference after a 500 g/kg substitution of a basal diet with OPs. A high fiber digestion efficiency was observed for both OPs. Pigs fed the basal diet showed a higher intake and a greater excretion of urine N than pigs fed with OP, but fecal N excretion did not differ among diets. A higher benzoic and hippuric acid content in urine was observed in OP than in basal diet. Altogether, these findings explained a lower pH in slurry of OP diets and a reduction of potential NH3 emissions. The biochemical CH4 potential also decreased, especially with ESDOP. Overall, both OP are relevant sources of energy for pig diets. Their inclusion in feeds generate favorable changes of slurry characteristics that reduce potential NH3 and CH4 emissions.

129 Effects of a multi-strain Bacillus subtilis-based direct-fed microbial on growth performance, nutrient digestibility, and colonic pH in diets fed to weanling pigs

A study was conducted to evaluate the effects of a multi-strain Bacillus subtilis-based direct-fed microbial (DFM) on apparent digestibility and colonic pH of nursery pigs. Eighty pigs, of equal number of barrows and gilts (initial BW: 6.99 ± 1.67 kg), were weaned at 21 ± 1 d and randomly allotted to sixteen pens, with five pigs per pen. Two dietary treatments were implemented, a basal control (CON) and a control plus DFM (DFM). Both diets were corn, soybean meal, and distillers dried grains based, formulated to meet all or exceed all nutritional requirements, and manufactured on site. Diets were fed for 42 days. Performance measures were recorded weekly. On d 21 and 42 of the experiment, one pig per pen was randomly selected and euthanized, with equal number of males and females represented. Digestibility of specific nutrients was evaluated within the duodenum, jejunum, ileum, ascending and distal colon. There were no overall differences in growth performance. Overall means ± SD were 0.51 ± 0.05 kg/d, 0.79 ± 0.05 kg/d and 0.66 ± 0.05 for ADG, ADFI, and G:F, respectively. Digestibility of tryptophan within the jejunum tended (P = 0.06) to increase with addition of DFM, as did cysteine (P = 0.12) and methionine (P = 0.10). The analysis also suggested that the impact of the DFM on the digestibility of amino acids may be early in the nursery phase. The pH of contents in ascending colon, a possible indicator of varied fiber digestion, did not differ. Likewise, no differences were observed between treatment in apparent total tract nitrogen and energy digestibility (analysis of distal colon contents). The addition of a multi-strain Bacillus subtilis-based DFM appears to impact digestibility of select amino acids depending upon location in the gastrointestinal tract.

393 Awardee Talk: Effect of trace mineral source on rumen fermentation and trace mineral distribution in the rumen

The role that Cu and Zn play in rumen microbial fermentation is not well understood. Microorganisms use small proportions of dietary Cu and Zn for catalytic, structural, and stabilizing functions. In order for microorganisms to acquire Cu and Zn, the elements must be soluble in the rumen environment. Data would indicate that practical diets fed to ruminants without Cu and Zn supplementation are able to meet the microbial Cu and Zn requirements. Therefore, rumen solubility of supplemental Cu and Zn can impact rumen microbial fermentation characteristics. Numerous factors can impact rumen solubility of minerals, such as the pH of the rumen, the concentration of dietary antagonists (Mo, Fe, S, fiber, etc.), and mineral source. Earlier research has indicated that high soluble concentrations of Cu and Zn in the rumen environment can become toxic to certain rumen microorganisms and decrease fiber digestion. Recent research from our laboratory has indicated that hydroxy trace mineral (HTM) forms of Cu and Zn are relatively insoluble in the rumen and that a greater proportion of HTM remained loosely bound to the insoluble fraction within the rumen when compared to sulfate trace mineral (STM) sources of Cu and Zn. We have also reported that supplemental sources of Cu and Zn that are highly soluble in the rumen environment (STM) can decrease fiber digestion, reduce total VFA concentrations, and can become more tightly bound to rumen solid digesta than HTM sources of Cu and Zn. The stronger binding of STM relative to HTM to the solid rumen digesta fraction may reduce absorption in the small intestine. Future research investigating the flow and passage rate of different trace mineral sources through the abomasum into the duodenum and duodenal absorption efficiency of Cu and Zn from different TM sources is needed.

2 Evaluation of Masters Choice Corn Silage on Growing Steer Performance

Corn hybrids can be selected for improved digestion rates using lab techniques, which should impact animal performance. The objective of this study was to evaluate two Masters Choice corn silage hybrids on growing steer performance. In an 84-day growing study, 288 crossbred steers (initial BW = 303 ± 12 kg) were utilized in a generalized randomized block design with three diet treatments, 12 steers per pen and 8 pen replicates per treatment. Diets consisted of 80% corn silage (DM basis) of Masters Choice hybrid MCT6365 RIB (MC1, that has been selected to improve fiber and starch digestion) and MCT6733 GT3000 (MC2, that has been selected to improve fiber digestion) were compared to a conventional corn hybrid Farm Choice (CON, that is commonly grown in Eastern Nebraska). All corn was grown in one field under identity preserved method and harvested at 37-38% DM in three consecutive days. Relative to CON, feeding MC1 resulted in similar dry matter intake (DMI, P = 0.28), but numerically increased average daily gain (ADG, P = 0.14) which significantly improved feed efficiency (G:F, P = 0.02). Feeding MC2 led to greater DMI (P < 0.01), similar ADG (P = 0.45), and lower G:F (P < 0.01) compared to CON. The results suggest that feeding Masters Choice hybrid MCT6365 RIB (MC1) corn silage at 80% of the diet DM improved ADG and G:F by 4.2%, while feeding MC2 decreased G:F by increasing DMI compared to CON. Differences in corn hybrids exist when feeding growing cattle 80% silage.