Drying temperatures on the functional properties of purple-fleshed sweet potato

ABSTRACT: Purple-fleshed sweet potatoes are rich in phenolic compounds, such as anthocyanins, and also exhibit hypoglycemic properties. Anthocyanins are natural antioxidants with the capacity to inhibit or delay injuries caused by free radicals. Drying is one of the most commonly used vegetable preservation methods; although,it has parameters that affect the sensory and physicochemical properties of the final product. The present study assessed the impact of drying temperatures (40, 50, and 60 °C) on the purple-fleshed sweet potato. Cut, unpeeled potato slices of 4 cm in diameter and 3 mm in thickness were dried in an oven with hot air circulation. The effect of the different temperatures on the antioxidant capacity, phenolic compound content, and total and monomeric quantities of anthocyanins in purple sweet potato were measured, and a mathematical model describing the drying kinetics was determined. According to the results observed, the process at 40 °C better preserved the phenolic compounds; however, drying at 50 °C was more efficient for conserving the antioxidant capacity measured by the H + capture method performed by DDPH, and for the total and monomeric quantities of anthocyanins. The mathematical models that best described the kinetic curves were those of Henderson and Pabis, and Page.

Possibilities of using RGB-based image analysis to estimate the chlorophyll content of micropropagated strawberry plants

An image analysis method based on RGB features for rapid estimation of the chlorophyll content of leaves of micropropagated strawberry plants (2 cultivars) was presented in the study. An algorithm describing the relationship between the absolute values of chlorophyll content and the colour components of a leaf image captured with a conventional scanner was developed and tested. The accuracy of the proposed method was compared with that of an optical greenness meters designed for assessing leaf chlorophyll content. The chlorophyll content in the strawberry leaves was correlated with the results of measurements recorded by the two optical meters (SPAD-502, CCM-200) and with RGB values of scans of these leaves. The highest values of correlation coefficients were obtained between the chemical analysis results and mean values of the red colour (R) of the scans. However, varietal differences were evident here, which indicates the need for individual calibrations. In the case of the green colour (G), the accuracy was slightly lower; however, no varietal differences were found, thus one calibration can be used for both cultivars. Three formulas: (R-G)/(R+G), (R-G)/(R+G+B), and R/(R+G+B) were selected and their relationship with the changes in chlorophyll content was tested. These variables did not explain the changes in chlorophyll content better than the variable R. The study confirmed the possibility of using the image capture method for the detection of chlorophyll status in strawberry plantlets cultured in vitro.

A wipe-based stool collection and preservation kit for microbiome community profiling

While a range of methods for stool collection exist, many require complicated, self-directed protocols and stool transfer. In this study, we introduce and validate a novel, wipe-based approach to fecal sample collection and stabilization for metagenomics analysis. A total of 72 samples were collected across four different preservation types: freezing at -20°C, room temperature storage, a commercial DNA preservation kit, and DESS (dimethyl sulfoxide, ethylenediaminetetraacetic acid, sodium chloride) solution. These samples were sequenced and analyzed for taxonomic abundance metrics, metabolic pathway classification, and diversity analysis. Overall, the DESS wipe results validated the use of a wipe-based capture method to collect stool samples for microbiome analysis, showing an R2 of 0.96 for species across all kingdoms, as well as exhibiting a maintenance of Shannon diversity (3.1-3.3) and species richness (151-159) compared to frozen samples. Moreover, DESS showed comparable performance to the commercially available preservation kit (R2 of 0.98), and samples consistently clustered by subject across each method. Future studies will be needed to further explore sample processing options and their applications in non-healthy subjects, particularly patients with irritable bowel syndrome, inflammatory bowel disease, and colorectal cancer, but these data suggest the DESS wipe method can be used for stable, room temperature collection and transport of human stool specimens.

EFFICIENCY OF ATTRACTORS AND TRAPS FOR CAPTURE OF SPOTTED-WING DROSOPHILA IN VINEYARDS1

ABSTRACT Pest monitoring is a practice that enables the estimation of populational density of insect-pests in crops. However, it requires the use of attractors and traps that present high efficiency. The objective of this work was to evaluate the efficiency of food attractors using different trap models for the capture of spotted-wing drosophila (Drosophila suzukii) insects, and the capture selectivity of these models in vineyards of Cabernet Sauvignon. The experiment was conducted in the 2018-2019 crop season, in São Joaquim, SC, Brazil. A randomized block design was used, in a 2 × 4 factorial arrangement consisted of two types of traps (PET bottle and plastic container), three attractors (SuzukiTrap®, Droskidrink, and Yeast), and distilled water as a control. The traps were distributed in a minimum distance of 15 m and fixed in the middle third of the plants. The collections and replacing of attractors were done with 21-day intervals. The data were analyzed through generalized linear models, using the Poisson distribution or Poisson with a dispersion parameter. All attractors tested captured adult D. suzukii insects. No significant differences were found between the trap types used. The findings of the present work showed that the trap plastic container with the Droskidrink attractor is the most suitable capture method to be used in monitoring programs for D. suzukii insects in commercial vineyards.

Probing Loop-Mediated Isothermal Amplification (LAMP) targeting two gene-fragments of rose rosette virus

This study explores the development of Loop-mediated isothermal amplification (LAMP) for detection of rose rosette virus (RRV), a technique with the potential to be translated to rose nurseries. RRV is a negative-sense, single-stranded RNA virus which is a member of the genus Emaravirus (Family Fimoviridae) and the causal agent of the rose rosette disease (RRD). Although RRV symptoms are characteristics, early visual diagnosis of RRD can be misleading and confusing since it may appear like herbicide damage. Moreover, it may take incubation time for symptoms to appear after virus infection. Two sets of RRV gene sequences RNA3 and RNA4 were analyzed and two sets of four LAMP primers were designed. The direct antigen-capture method for direct trapping of RRV in plastic was used for RNA extraction followed by cDNA synthesis. RT-LAMP reactions were for 1 hour at 64°C (RRV-P3) and 66.5°C (RRV-P4) using either a thermocycler or a portable dry bath. RT-qLAMP was also optimized using DNA polymerase GspSSD LD using the same RRV sets of primers. RRV was detected in symptomatic and non-symptomatic RRD tissue from Oklahoma. The limit of detection (LoD) was 1pg/μL and 1 fg/μL using Bst 2.0 LAMP and GspSSD LD quantitative LAMP, respectively. In visual colorimetric pre- and post-reactions, the LoD was 10 pg/μL and 0.1 pg/μL using hydroxy naphthol blue (HNB, 120 μM) and SYBR green I (1:10 dilution), respectively. No cross-reactivity was detected in the RT-LAMP reaction testing cDNAs of eight commonly co-infecting rose viruses and one virus taxonomically related to RRV. Four different dyes were tested, and visible colorimetric reactions were obtained with RT-LAMP Bst 2.0 combined with SYBR I or HNB. RT-qLAMP with GspSSD2.0 offers LoD equal to RT-PCR and it is faster since it works with RNA directly.

Analysis and synthesis of function data of human movement

The article proposes a human motion capture method based on operational data. The thesis first uses the human body wear system to perform functional processing on the captured periodic motion data, and then extracts the data sequence for the few motions. Thereafter, the classification of the vector calculation method is carried out according to the characteristics of periodic data. Through experimental research, it is found that the functional data analysis (FDA) algorithm proposed in the thesis can accurately identify human motion behaviour, and the automatically collected data has a recognition rate that is as high as 98.9%. Therefore, we have concluded that the human body data functional analysis algorithm has higher recognition accuracy than the traditional optical capture system. Thus, it is worthy of further research and discussion.

Evaluation of a novel direct capture method for virus concentration n wastewater from COVID-19 infectious ward and correlation analysis with the number of inpatients.

The global outbreak of the SARS-CoV-2 pandemic has increased the focus of Wastewater-based epidemiology (WBE) studies as a tool for understanding the epidemic and risk management. A highly sensitive and rapid method for the virus concentration from wastewater is needed to obtain the accurate information for early detection of SARS-CoV-2 outbreak and epidemic. In this study, we evaluated the efficiency of the direct capture method provided from Promega, based on column adsorption using the wastewater from actual infectious diseases ward. The efficiency of the nucleic acid extraction-purification process was also evaluated by Maxwell RSC instrument (fully automated extraction) and QIAamp Viral RNA mini kit (manual extraction). The obtained SARS-CoV-2 data from wastewater were analyzed with the number of inpatients which is the consideration of the severity and the days of onset. The combination of direct capture and Maxwell's method (DC-MW) was suggested to be a highly sensitive and simple method with better concentration efficiency and quantification than other methods. Moreover, the inpatient conditions (severity and days of after onset) should be considered to accurately understand the actual status of the correlation between the number of inpatients and SARS-CoV-2 concentration in wastewater. The highly sensitive method of DC-MW was suggested to assess more actual situation of SARS-CoV-2 shedding into the wastewater.

Real-Time Capture of Snowboarder’s Skiing Motion Using a 3D Vision Sensor

Due to the influence of environmental interference and too fast speed, there are some problems in ski motion capture, such as inaccurate motion capture, motion delay, and motion loss, resulting in the inconsistency between the actual motion of later athletes and the motion of virtual characters. To solve the above problems, a real-time skiing motion capture method of snowboarders based on a 3D vision sensor is proposed. This method combines the Time of Fight (TOF) camera and high-speed vision sensor to form a motion acquisition system. The collected motion images are fused to form a complete motion image, and the pose is solved. The pose data is bound with the constructed virtual character model to drive the virtual model to synchronously complete the snowboarding motion and realize the real-time capture of skiing motion. The results show that the motion accuracy of the system is as high as 98.6%, which improves the capture effect, and the motion matching proportion is better and more practical. It is also excellent in the investigation of motion delay and motion loss.

Ichthyoplankton DNA metabarcoding: challenges and perspectives

DNA metabarcoding has been widely used to access and monitor species. However, several challenges remain open for its mainstream application in ecological studies, particularly when dealing with a quantitative approach. In a from the Cover article in this issue of Molecular Ecology, Cédric et al. (2021) report species-level ichthyoplankton dynamics for 97 fish species from two Amazon river basins using a clever quantitative metabarcoding approach employing a probe capture method. They clearly show that most species spawned during the rainy season when the floods started, but interestingly, species from the same genus reproduced in distinct periods (i.e., inverse phenology). Opportunistically, Cédric et al. (2021) reported that during an intense hydrological anomaly, several species had a sharp reduction in spawning activity, demonstrating a quick response to environmental cues. This is an interesting result since the speed at which fish species can react to environmental changes, during the spawning period, is largely unknown. Thus, this study brings remarkable insights into basic life history information that is imperative for proposing strategies that could lead to a realistic framework for sustainable fisheries management practices and conservation, fundamental for an under-studied and threatened realm, such as the Amazon River basin.

Electronic Mapping of a Bacterial Genome with Dual Solid-State Nanopores and Active Single-Molecule Control

We present the first electronic mapping of a bacterial genome using solid-state nanopore technology. A dual-nanopore architecture and active control logic are used to produce single-molecule data that enables estimation of distances between physical tags installed at sequence motifs within double-stranded DNA (dsDNA). Previously developed dual-pore "DNA flossing" control generates multiple scans of tagged regions of each captured DNA. The control logic was extended here in two ways: first, to automate "zooming out" on each molecule to progressively increase the number of tags scanned during DNA flossing; and second, to automate recapture of a molecule that exited flossing to enable interrogation of the same and/or different regions of the molecule. New analysis methods were developed to produce consensus alignments from each multi-scan event. The combined multi-scanning and multi-capture method was applied to the challenge of mapping from a heterogeneous mixture of single-molecule fragments that make up the Escherichia coli (E. coli) chromosome. Coverage of 3.1X across 2,355 resolvable sites (68% of reference sites) of the E. coli genome was achieved after 5.6 hours of recording time. The recapture method showed a 38% increase in the merged-event alignment length compared to single-scan alignments. The observed inter-tag resolution was 150 bp in engineered DNA molecules and 166 bp natively within fragments of E. coli DNA, with detection of 133 inter-site intervals shorter than 200 bp in the E. coli reference map. Proof of concept results on estimating distances in repetitive regions of the E. coli genome are also provided. With an appropriately designed array and future refinements to the control logic, higher throughput implementations can enable human-sized genome and epigenome mapping applications.