Complete genome sequence and Benzophenone-3 mineralisation potential of Rhodococcus sp. USK10, a bacterium isolated from riverbank sediment.

Benzophenone-3 (BP3) is an organic UV filter whose presence in the aquatic environment has been linked to detrimental developmental impacts in aquatic organisms such as coral and fish. The genus Rhodococcus has been extensively studied and is known for possessing large genomes housing genes for biodegradation of a wide range of compounds, including aromatic carbons. Here, we present the genome sequence of Rhodococcus sp. USK10, which was isolated from Chinese riverbank sediment and is capable of utilising BP3 as the sole carbon source, resulting in full BP3 mineralisation. The genome consisted of 9,870,030 bp in 3 replicons, a G+C content of 67.2%, and 9,722 coding DNA sequences (CDSs). Annotation of the genome revealed that 179 of these CDSs are involved in metabolism of aromatic carbons. The complete genome of Rhodococcus sp. USK10 is the first complete, annotated genome sequence of a Benzophenone-3 degrading bacterium. Through radiolabelling, it is also the first bacterium proven to mineralise Benzophenone-3. Due to the widespread environmental prevalence of Benzophenone-3, coupled to its adverse impact on aquatic organisms, this characterisation provides an integral first step in better understanding the environmentally relevant degradation pathway of the commonly used UV filter. Given USK10's ability to completely mineralise Benzophenone-3, it could prove to be a suitable candidate for bioremediation application.

Photobiomodulation of mineralisation in mesenchymal stem cells

Mesenchymal stem cells (MSCs) and photobiomodulation (PBM) both offer significant therapeutic potential in regenerative medicine. MSCs have the ability to self-renew and differentiate; giving rise to multiple cellular and tissue lineages that are utilised in repair and regeneration of damaged tissues. PBM utilises light energy delivered at a range of wavelengths to promote wound healing. The positive effects of light on MSC proliferation are well documented; and recently, several studies have determined the outcomes of PBM on mineralised tissue differentiation in MSC populations. As PBM effects are biphasic, it is important to understand the underlying cellular regulatory mechanisms, as well as, provide accurate details of the irradiation conditions, to optimise and standardise outcomes. This review article focuses on the use of red, near-infra-red (R/NIR) and blue wavelengths to promote the mineralisation potential of MSCs; and also reports on the possible molecular mechanisms which underpin transduction of these effects. A variety of potential photon absorbers have been identified which are reported to mediate the signalling mechanisms, including respiratory chain enzymes, flavins, and cryptochromes. Studies report that R/NIR and blue light stimulate MSC differentiation by enhancing respiratory chain activity and increasing reactive oxygen species levels; however, currently, there are considerable variations between irradiation parameters reported. We conclude that due to its non-invasive properties, PBM may, following optimisation, provide an efficient therapeutic approach to clinically support MSC-mediated hard tissue repair. However, to optimise application, further studies are required to identify appropriate light delivery parameters, as well as elucidate the photo-signalling mechanisms involved.

Petrographic and mineralisation Potentials of Precambrian Pegmatities and associated rock units of Olode area, Southwestern Nigeria

The geology of the Olode area, south-western Nigeria was investigated petrographically and geochemically in order to elucidate the mineralisation potential of the rock units in the area. The area under study is generally underlain by granite gneiss, mica schist and pegmatites. Petrographical studies indicated prevalence of anhedral quartz (30 – 50%), plagioclase (14 – 20%), orthoclase (12 – 15%), muscovite (11 – 15%), tourmaline (6 – 10) and other minerals (8 – 11%) for the pegmatite. The high value of SiO2 and Al2O3 is consistent with the petrographical study. High values and wide range in Ba (34 – 737 ppm) and Zr (3.8 – 132.6 ppm) strongly support a mixture of igneous and sedimentaryThe bivariant plots of Rb vs K/Rb, Zn vs K/Rb and Th vs K/Rb indicated a partial series of fractionation, suggesting that the pegmatites are of rare element classes while granite gneiss and mica schist belong to the barren muscovite and rare element classes. This was supported by high ratios of K/Cs and K/Ba but low Th/U values indicating distinctively low rare metal mineralization. The plot of Na2O/Al2O3 vs K2O/Al2O3 revealed an igneous precursor for all the rock units. The negative Eu anomalies especially in the pegmatitic rock unit indicates fractionation and point toward a late metasomatic effect and their relatively weak negative Ce anomalies, also suggest their rare metal mineralization. The pegmatites, granite gneiss and mica schist of Olode area considered as barren as all the samples plotted below the Gordiyenkos and Beus’ line of mineralization.

Solid fraction of separated digestate as soil improver: implications for soil fertility and carbon sequestration

Purpose This study investigated the C and N mineralisation potential of solid fractions (SFs) from co-digestated pig manure after P-stripping (P-POOR SF) in comparison with P-rich SFs, as a means to estimate their organic matter stability in soil. Compost (COMP) and biochar (BCHR) (made from P-POOR SF) were also included in the study as reference biosolids. Methods The SFs were incubated in a sandy-loam soil under moist conditions to determine production of CO2 and mineral N. At specified intervals, CO2 evolution in the mixtures was measured via the alkali trap method and titration over a period of 81 days, while mineral N was measured using a flow analyser after KCl extraction over a period of 112 days. Results The various SFs showed similar patterns of C mineralisation (15–26% of added total C in 81 days) that were clearly higher than for COMP and BCHR (6% and 7%, respectively). Temporary N immobilisation was observed in biosolids with a high C/N ratio. The effective organic matter (EOM) of the SFs was calculated based on the C mineralisation data and varied between 130 and 369 kg Mg−1. Conclusions The SF with a reduced P content had a high EOM/P ratio which is beneficial in areas where P status of the soil is already high. Moreover, the N mineralisation patterns confirm that a high C/N ratio may also reduce risks for N leaching due to temporary N immobilisation.

Predicting nitrogen mineralisation in Australian irrigated cotton cropping systems

Cotton cropping systems in Australia have poor nitrogen (N) use efficiency, largely due to over-application of N fertiliser. The N mineralisation from soil organic N reserves is often overlooked, or underestimated despite recent studies indicating that it may contribute the majority of N exported with the crop. Predicting N mineralisation is a major challenge for agricultural industries worldwide, as direct measurements are time-consuming and expensive, but there is considerable debate as to the most reliable methods for indirect estimation. Additionally, laboratory incubations assess potential (rather than actual) mineralisation, and may not be representative of N cycling rates in the field. We collected 177 samples from most major Australian cotton growing regions, and assessed their mineralisation potential using ex situ laboratory incubations, along with an assessment of potential indicators routinely measured in soil nutrient tests. Additionally, at three unfertilised sites we conducted in situ assessment of mineralisation by quantifying soil N at the beginning of the growing season, and soil and crop N at the end of the season. We found that Australian cotton cropping soils had substantial mineralisation potential, and that soil total N and total carbon were correlated with mineralisation, and have potential to be used for prediction. Other potential indicators such as carbon dioxide production and ammonium and nitrate concentrations were not correlated with mineralisation. In parallel studies of ex situ and in situ mineralisation, we found ex situ laboratory incubations overestimated mineralisation by 1.7 times on average. We discuss findings in terms of management implications for Australian cotton farming systems.