Lesion Localization and Extreme Gradient Boosting Characterization with Brain Tumor MRI Images

2020 ◽  
pp. 395-409
Author(s):  
P. M. Siva Raja ◽  
K. Ramanan
Keyword(s):  
Brain Tumor ◽  
Gradient Boosting ◽  
Extreme Gradient Boosting ◽  
Lesion Localization ◽  
Tumor Mri

Predicting Undesired Treatment Outcome in Mental Healthcare: Machine Learning Study (Preprint)

2019 ◽  
Author(s):  
Kasper Van Mens ◽  
Joran Lokkerbol ◽  
Richard Janssen ◽  
Robert de Lange ◽  
Bea Tiemens
Keyword(s):  
Machine Learning ◽  
Treatment Outcome ◽  
Mental Health Treatment ◽  
Mental Healthcare ◽  
Machine Learning Algorithms ◽  
Gradient Boosting ◽  
Trade Off ◽  
Trade Offs ◽  
Outcome Monitoring ◽  
Extreme Gradient Boosting

BACKGROUND It remains a challenge to predict which treatment will work for which patient in mental healthcare. OBJECTIVE In this study we compare machine algorithms to predict during treatment which patients will not benefit from brief mental health treatment and present trade-offs that must be considered before an algorithm can be used in clinical practice. METHODS Using an anonymized dataset containing routine outcome monitoring data from a mental healthcare organization in the Netherlands (n = 2,655), we applied three machine learning algorithms to predict treatment outcome. The algorithms were internally validated with cross-validation on a training sample (n = 1,860) and externally validated on an unseen test sample (n = 795). RESULTS The performance of the three algorithms did not significantly differ on the test set. With a default classification cut-off at 0.5 predicted probability, the extreme gradient boosting algorithm showed the highest positive predictive value (ppv) of 0.71(0.61 – 0.77) with a sensitivity of 0.35 (0.29 – 0.41) and area under the curve of 0.78. A trade-off can be made between ppv and sensitivity by choosing different cut-off probabilities. With a cut-off at 0.63, the ppv increased to 0.87 and the sensitivity dropped to 0.17. With a cut-off of at 0.38, the ppv decreased to 0.61 and the sensitivity increased to 0.57. CONCLUSIONS Machine learning can be used to predict treatment outcomes based on routine monitoring data.This allows practitioners to choose their own trade-off between being selective and more certain versus inclusive and less certain.

XGBoost and Network Analysis for Prediction of Proteins Affecting Insulin based on Protein Protein Interactions

2020 ◽  
pp. 253-262
Author(s):  
Mohammad Hamim Zajuli Al Faroby ◽  
Mohammad Isa Irawan ◽  
Ni Nyoman Tri Puspaningsih
Keyword(s):  
Protein Interactions ◽  
Interaction Analysis ◽  
Synthesis Process ◽  
Gradient Boosting ◽  
Protein Protein Interactions ◽  
Central Function ◽  
Extreme Gradient Boosting ◽  
Main Protein ◽  
The Right ◽  
Roc Score

Protein Interaction Analysis (PPI) can be used to identify proteins that have a supporting function on the main protein, especially in the synthesis process. Insulin is synthesized by proteins that have the same molecular function covering different but mutually supportive roles. To identify this function, the translation of Gene Ontology (GO) gives certain characteristics to each protein. This study purpose to predict proteins that interact with insulin using the centrality method as a feature extractor and extreme gradient boosting as a classification algorithm. Characteristics using the centralized method produces  features as a central function of protein. Classification results are measured using measurements, precision, recall and ROC scores. Optimizing the model by finding the right parameters produces an accuracy of  and a ROC score of . The prediction model produced by XGBoost has capabilities above the average of other machine learning methods.

scholarly journals Evaluation of Three Different Machine Learning Methods for Object-Based Artificial Terrace Mapping—A Case Study of the Loess Plateau, China

2021 ◽  
Vol 13 (5) ◽  
pp. 1021
Author(s):  
Hu Ding ◽  
Jiaming Na ◽  
Shangjing Jiang ◽  
Jie Zhu ◽  
Kai Liu ◽  
...  
Keyword(s):  
Machine Learning ◽  
Random Forest ◽  
Loess Plateau ◽  
Water Conservation ◽  
Nearest Neighbor ◽  
Gradient Boosting ◽  
K Nearest Neighbor ◽  
The Loess Plateau ◽  
Object Based ◽  
Extreme Gradient Boosting

Artificial terraces are of great importance for agricultural production and soil and water conservation. Automatic high-accuracy mapping of artificial terraces is the basis of monitoring and related studies. Previous research achieved artificial terrace mapping based on high-resolution digital elevation models (DEMs) or imagery. As a result of the importance of the contextual information for terrace mapping, object-based image analysis (OBIA) combined with machine learning (ML) technologies are widely used. However, the selection of an appropriate classifier is of great importance for the terrace mapping task. In this study, the performance of an integrated framework using OBIA and ML for terrace mapping was tested. A catchment, Zhifanggou, in the Loess Plateau, China, was used as the study area. First, optimized image segmentation was conducted. Then, features from the DEMs and imagery were extracted, and the correlations between the features were analyzed and ranked for classification. Finally, three different commonly-used ML classifiers, namely, extreme gradient boosting (XGBoost), random forest (RF), and k-nearest neighbor (KNN), were used for terrace mapping. The comparison with the ground truth, as delineated by field survey, indicated that random forest performed best, with a 95.60% overall accuracy (followed by 94.16% and 92.33% for XGBoost and KNN, respectively). The influence of class imbalance and feature selection is discussed. This work provides a credible framework for mapping artificial terraces.

scholarly journals Computational Intelligence-Based Model for Mortality Rate Prediction in COVID-19 Patients

2021 ◽  
Vol 18 (12) ◽  
pp. 6429
Author(s):  
Irfan Ullah Khan ◽  
Nida Aslam ◽  
Malak Aljabri ◽  
Sumayh S. Aljameel ◽  
Mariam Moataz Aly Kamaleldin ◽  
...  
Keyword(s):  
Mortality Rate ◽  
Computational Intelligence ◽  
Nearest Neighbor ◽  
Gradient Boosting ◽  
K Nearest Neighbor ◽  
Detection And Identification ◽  
Proposed Model ◽  
Extreme Gradient Boosting ◽  
The World ◽  
Detection And Diagnosis

The COVID-19 outbreak is currently one of the biggest challenges facing countries around the world. Millions of people have lost their lives due to COVID-19. Therefore, the accurate early detection and identification of severe COVID-19 cases can reduce the mortality rate and the likelihood of further complications. Machine Learning (ML) and Deep Learning (DL) models have been shown to be effective in the detection and diagnosis of several diseases, including COVID-19. This study used ML algorithms, such as Decision Tree (DT), Logistic Regression (LR), Random Forest (RF), Extreme Gradient Boosting (XGBoost), and K-Nearest Neighbor (KNN) and DL model (containing six layers with ReLU and output layer with sigmoid activation), to predict the mortality rate in COVID-19 cases. Models were trained using confirmed COVID-19 patients from 146 countries. Comparative analysis was performed among ML and DL models using a reduced feature set. The best results were achieved using the proposed DL model, with an accuracy of 0.97. Experimental results reveal the significance of the proposed model over the baseline study in the literature with the reduced feature set.

scholarly journals A Machine Learning Method for Predicting Vegetation Indices in China

2021 ◽  
Vol 13 (6) ◽  
pp. 1147
Author(s):  
Xiangqian Li ◽  
Wenping Yuan ◽  
Wenjie Dong
Keyword(s):  
Machine Learning ◽  
Growing Season ◽  
Crop Growth ◽  
Spatiotemporal Distribution ◽  
Coefficient Of Determination ◽  
Gradient Boosting ◽  
Severe Drought ◽  
Vegetation Growth ◽  
Extreme Gradient Boosting ◽  
Boosting Method

To forecast the terrestrial carbon cycle and monitor food security, vegetation growth must be accurately predicted; however, current process-based ecosystem and crop-growth models are limited in their effectiveness. This study developed a machine learning model using the extreme gradient boosting method to predict vegetation growth throughout the growing season in China from 2001 to 2018. The model used satellite-derived vegetation data for the first month of each growing season, CO2 concentration, and several meteorological factors as data sources for the explanatory variables. Results showed that the model could reproduce the spatiotemporal distribution of vegetation growth as represented by the satellite-derived normalized difference vegetation index (NDVI). The predictive error for the growing season NDVI was less than 5% for more than 98% of vegetated areas in China; the model represented seasonal variations in NDVI well. The coefficient of determination (R2) between the monthly observed and predicted NDVI was 0.83, and more than 69% of vegetated areas had an R2 > 0.8. The effectiveness of the model was examined for a severe drought year (2009), and results showed that the model could reproduce the spatiotemporal distribution of NDVI even under extreme conditions. This model provides an alternative method for predicting vegetation growth and has great potential for monitoring vegetation dynamics and crop growth.

scholarly journals Machine Learning-Based Energy System Model for Tissue Paper Machines

Processes ◽  
2021 ◽  
Vol 9 (4) ◽  
pp. 655
Author(s):  
Huanhuan Zhang ◽  
Jigeng Li ◽  
Mengna Hong
Keyword(s):  
Neural Network ◽  
Energy Consumption ◽  
Gradient Boosting ◽  
Paper Machine ◽  
Steam Consumption ◽  
Tissue Paper ◽  
Paper Machines ◽  
Energy Consumption Model ◽  
Extreme Gradient Boosting ◽  
Consumption Model

With the global energy crisis and environmental pollution intensifying, tissue papermaking enterprises urgently need to save energy. The energy consumption model is essential for the energy saving of tissue paper machines. The energy consumption of tissue paper machine is very complicated, and the workload and difficulty of using the mechanism model to establish the energy consumption model of tissue paper machine are very large. Therefore, this article aims to build an empirical energy consumption model for tissue paper machines. The energy consumption of this model includes electricity consumption and steam consumption. Since the process parameters have a great influence on the energy consumption of the tissue paper machines, this study uses three methods: linear regression, artificial neural network and extreme gradient boosting tree to establish the relationship between process parameters and power consumption, and process parameters and steam consumption. Then, the best power consumption model and the best steam consumption model are selected from the models established by linear regression, artificial neural network and the extreme gradient boosting tree. Further, they are combined into the energy consumption model of the tissue paper machine. Finally, the models established by the three methods are evaluated. The experimental results show that using the empirical model for tissue paper machine energy consumption modeling is feasible. The result also indicates that the power consumption model and steam consumption model established by the extreme gradient boosting tree are better than the models established by linear regression and artificial neural network. The experimental results show that the power consumption model and steam consumption model established by the extreme gradient boosting tree are better than the models established by linear regression and artificial neural network. The mean absolute percentage error of the electricity consumption model and the steam consumption model built by the extreme gradient boosting tree is approximately 2.72 and 1.87, respectively. The root mean square errors of these two models are about 4.74 and 0.03, respectively. The result also indicates that using the empirical model for tissue paper machine energy consumption modeling is feasible, and the extreme gradient boosting tree is an efficient method for modeling energy consumption of tissue paper machines.

scholarly journals Machine learning models to identify low adherence to influenza vaccination among Korean adults with cardiovascular disease

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Moojung Kim ◽  
Young Jae Kim ◽  
Sung Jin Park ◽  
Kwang Gi Kim ◽  
Pyung Chun Oh ◽  
...  
Keyword(s):  
Machine Learning ◽  
Cardiovascular Disease ◽  
Influenza Vaccination ◽  
Machine Learning Techniques ◽  
Gradient Boosting ◽  
Support Vector ◽  
Age Group ◽  
Learning Models ◽  
Extreme Gradient Boosting ◽  
Machine Learning Models

Abstract Background Annual influenza vaccination is an important public health measure to prevent influenza infections and is strongly recommended for cardiovascular disease (CVD) patients, especially in the current coronavirus disease 2019 (COVID-19) pandemic. The aim of this study is to develop a machine learning model to identify Korean adult CVD patients with low adherence to influenza vaccination Methods Adults with CVD (n = 815) from a nationally representative dataset of the Fifth Korea National Health and Nutrition Examination Survey (KNHANES V) were analyzed. Among these adults, 500 (61.4%) had answered "yes" to whether they had received seasonal influenza vaccinations in the past 12 months. The classification process was performed using the logistic regression (LR), random forest (RF), support vector machine (SVM), and extreme gradient boosting (XGB) machine learning techniques. Because the Ministry of Health and Welfare in Korea offers free influenza immunization for the elderly, separate models were developed for the < 65 and ≥ 65 age groups. Results The accuracy of machine learning models using 16 variables as predictors of low influenza vaccination adherence was compared; for the ≥ 65 age group, XGB (84.7%) and RF (84.7%) have the best accuracies, followed by LR (82.7%) and SVM (77.6%). For the < 65 age group, SVM has the best accuracy (68.4%), followed by RF (64.9%), LR (63.2%), and XGB (61.4%). Conclusions The machine leaning models show comparable performance in classifying adult CVD patients with low adherence to influenza vaccination.

An intelligent evolutionary extreme gradient boosting algorithm development for modeling scour depths under submerged weir

2021 ◽  
Author(s):  
Hai Tao ◽  
Maria Habib ◽  
Ibrahim Aljarah ◽  
Hossam Faris ◽  
Haitham Abdulmohsin Afan ◽  
...  
Keyword(s):  
Gradient Boosting ◽  
Algorithm Development ◽  
Extreme Gradient Boosting ◽  
Boosting Algorithm
Sign in / Sign up

Export Citation Format

Share Document