Role of Microbial Communities in Sustainable Rice Cultivation

2021 ◽  
pp. 189-223
Author(s):  
Thilini A. Perera ◽  
Shamala Tirimanne
Keyword(s):  
Microbial Communities ◽  
Rice Cultivation

scholarly journals Influence of pig farming on human Gut Microbiota: role of airborne microbial communities

Gut Microbes ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 1-13
Author(s):  
Julia Moor ◽  
Tsering Wüthrich ◽  
Suzanne Aebi ◽  
Nadezda Mostacci ◽  
Gudrun Overesch ◽  
...  
Keyword(s):  
Gut Microbiota ◽  
Microbial Communities ◽  
Human Gut ◽  
Human Gut Microbiota ◽  
Pig Farming

scholarly journals The Role of Extension and Advisory Services in Strengthening Farmers’ Innovation Networks to Adapt to Climate Extremes

2021 ◽  
Vol 13 (4) ◽  
pp. 1941
Author(s):  
Md Kamruzzaman ◽  
Katherine Anne Daniell ◽  
Ataharul Chowdhury ◽  
Steven Crimp
Keyword(s):  
Information Access ◽  
Significant Risk ◽  
Climate Extremes ◽  
Rice Cultivation ◽  
Innovation Networks ◽  
Flash Flooding ◽  
Research Organizations ◽  
Local Input ◽  
Local Weather

There is anecdotal evidence of the effectiveness of Extension and Advisory Service (EAS) agencies for strengthening innovation networks to adapt to extreme events that impact agricultural production and productivity. In Bangladesh, the Department of Agricultural Extension (DAE) is responsible for ensuring sustainable rice farming, which is damaged by flash flooding every year. This study investigates how EAS can strengthen farmers’ innovation networks by examining DAE’s efforts to adapt rice cultivation to flash flooding. Using surveys and interviews from farmers affiliated with DAE (DAE-farmers) and farmers independent of DAE (non-DAE farmers), the effectiveness of innovation networks was examined. One of the key findings of this paper is that DAE’s efforts to strengthen the innovation networks of farmers to adapt rice cultivation to flash flooding focused on the facilitation of the agronomic network development. The organization missed the opportunity to enable the harvesting networks’ efficacy. As the harvesting activities are highly exposed to flash flooding, the absence of adequate support from the DAE and timely updates of local weather and flash flooding information indicates that farmers are still at significant risk. This study also shows the value of including both formal (e.g., EAS agencies, research organizations) and informal actors (e.g., relatives, local input dealers) in the innovation network as a way of ensuring diversity of information access.

scholarly journals Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome

Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Hannes Petruschke ◽  
Christian Schori ◽  
Sebastian Canzler ◽  
Sarah Riesbeck ◽  
Anja Poehlein ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Intestinal Microbiota ◽  
De Novo ◽  
Bacterial Species ◽  
Intestinal Microbiome ◽  
Single Strain ◽  
Small Proteins ◽  
Human Intestinal Microbiota ◽  
Wide Range

Abstract Background The intestinal microbiota plays a crucial role in protecting the host from pathogenic microbes, modulating immunity and regulating metabolic processes. We studied the simplified human intestinal microbiota (SIHUMIx) consisting of eight bacterial species with a particular focus on the discovery of novel small proteins with less than 100 amino acids (= sProteins), some of which may contribute to shape the simplified human intestinal microbiota. Although sProteins carry out a wide range of important functions, they are still often missed in genome annotations, and little is known about their structure and function in individual microbes and especially in microbial communities. Results We created a multi-species integrated proteogenomics search database (iPtgxDB) to enable a comprehensive identification of novel sProteins. Six of the eight SIHUMIx species, for which no complete genomes were available, were sequenced and de novo assembled. Several proteomics approaches including two earlier optimized sProtein enrichment strategies were applied to specifically increase the chances for novel sProtein discovery. The search of tandem mass spectrometry (MS/MS) data against the multi-species iPtgxDB enabled the identification of 31 novel sProteins, of which the expression of 30 was supported by metatranscriptomics data. Using synthetic peptides, we were able to validate the expression of 25 novel sProteins. The comparison of sProtein expression in each single strain versus a multi-species community cultivation showed that six of these sProteins were only identified in the SIHUMIx community indicating a potentially important role of sProteins in the organization of microbial communities. Two of these novel sProteins have a potential antimicrobial function. Metabolic modelling revealed that a third sProtein is located in a genomic region encoding several enzymes relevant for the community metabolism within SIHUMIx. Conclusions We outline an integrated experimental and bioinformatics workflow for the discovery of novel sProteins in a simplified intestinal model system that can be generically applied to other microbial communities. The further analysis of novel sProteins uniquely expressed in the SIHUMIx multi-species community is expected to enable new insights into the role of sProteins on the functionality of bacterial communities such as those of the human intestinal tract.

scholarly journals The microbial world in a changing environment

2021 ◽  
Vol 94 (1) ◽  
Author(s):  
Rafael Vicuña ◽  
Bernardo González
Keyword(s):  
Climate Change ◽  
Microbial Communities ◽  
Recent Literature ◽  
Public Awareness ◽  
Complete Evaluation ◽  
Microbial World ◽  
Sustainable Environment ◽  
Entire Planet ◽  
New Strategies

Abstract Background In this article we would like to touch on the key role played by the microbiota in the maintenance of a sustainable environment in the entire planet. For obvious reasons, this article does not intend to review thoroughly this extremely complex topic, but rather to focus on the main threats that this natural scenario is presently facing. Methods Recent literature survey. Results Despite the relevance of microorganisms have in our planet, the effects of climate change on microbial communities have been scarcely and not systematically addressed in literature. Although the role of microorganisms in emissions of greenhouse gases has received some attention, there are several microbial processes that are affected by climate change with consequences that are presently under assessment. Among them, host-pathogen interactions, the microbiome of built environment, or relations among plants and beneficial microbes. Conclusions Further research is required to advance in knowledge of the effect of climate change on microbial communities. One of the main targets should be a complete evaluation of the global microbial functional diversity and the design of new strategies to cope with limitations in methods to grow microorganisms in the laboratory. These efforts should contribute to raise a general public awareness on the major role played by the microbiota on the various Earth ecosystems.

scholarly journals Deterministic Selection Dominates Microbial Community Assembly in Termite Mounds Across a Large Spatial Area

2020 ◽  
Author(s):  
Qing-Lin Chen ◽  
Hang-Wei Hu ◽  
Zhen-Zhen Yan ◽  
Chao-Yu Li ◽  
Bao-Anh Thi Nguyen ◽  
...  
Keyword(s):  
Microbial Community ◽  
Stochastic Processes ◽  
Microbial Communities ◽  
Fungal Community ◽  
Community Assembly ◽  
Distance Decay ◽  
Termite Mounds ◽  
Deterministic Processes ◽  
Microbial Community Assembly

Abstract Background: Termites are ubiquitous insects in tropical and subtropical habitats, where they construct massive mounds from soil, their saliva and excreta. Termite mounds harbor an enormous amount of microbial inhabitants, which regulate multiple ecosystem functions such as mitigating methane emissions and increasing ecosystem resistance to climate change. However, we lack a mechanistic understanding about the role of termite mounds in modulating the microbial community assembly processes, which are essential to unravel the biological interactions of soil fauna and microorganisms, the major components of soil food webs. We conducted a large-scale survey across a >1500 km transect in northern Australia to investigate biogeographical patterns of bacterial and fungal community in 134 termite mounds and the relative importance of deterministic versus stochastic processes in microbial community assembly. Results: Microbial alpha (number of phylotypes) and beta (changes in bacterial and fungal community composition) significantly differed between termite mounds and surrounding soils. Microbial communities in termite mounds exhibited a significant distance-decay pattern, and fungal communities had a stronger distance-decay relationship (slope = -1.91) than bacteria (slope = -0.21). Based on the neutral community model (fitness < 0.7) and normalized stochasticity ratio index (NST) with a value below the 50% boundary point, deterministic selection, rather than stochastic forces, predominated the microbial community assembly in termite mounds. Deterministic processes exhibited significantly weaker impacts on bacteria (NST = 45.23%) than on fungi (NST = 33.72%), probably due to the wider habitat niche breadth and higher potential migration rate of bacteria. The abundance of antibiotic resistance genes (ARGs) was negatively correlated with bacterial/fungal biomass ratios, indicating that ARG content might be an important biotic factor that drove the biogeographic pattern of microbial communities in termite mounds. Conclusions: Deterministic processes play a more important role than stochastic processes in shaping the microbial community assembly in termite mounds, an unique habitat ubiquitously distributed in tropical and subtropical ecosystems. An improved understanding of the biogeographic patterns of microorganisms in termite mounds is crucial to decipher the role of soil faunal activities in shaping microbial community assembly, with implications for their mediated ecosystems functions and services.

scholarly journals Exploration and Characterization of Trichoderma sp. in Conventional and Organic Rice field in Bali

2021 ◽  
Vol 5 (2) ◽  
Author(s):  
A. A. S. P. R. Andriani ◽  
Idris Sharif ◽  
Bohari M Yamin ◽  
S. A. M. P. Suryani ◽  
Krisnawan Kalimutu
Keyword(s):  
Trichoderma Harzianum ◽  
Rice Field ◽  
Local Environment ◽  
High Density ◽  
Rice Cultivation ◽  
Trichoderma Spp ◽  
Plastic Container ◽  
Trichoderma Sp ◽  
Long Time

Abstract. Although Trichoderma spp has been widely used in the SRI technique of rice cultivation the sources of Trichoderma that can adapt well to the local environment have been an interesting issue for quite some time.  It is commonly agreed that the local Trichoderma is much more preferred to be used for rice cultivation. In the present study, the Trichoderma from the soil of a rice field in Sukawati District,  Bali where conventional fertilizer and pesticide has been applied for a very long time was isolated.  After macroscopic observations (green color and sweet coconut smell ) the single isolated fungi have very much resembled Trichoderma Harzianum. 2 mL of the Trichoderma Harzianum solution was introduced in a plastic container containing 200 g half-boiled rice. After seven days the rice in the plastic appeared green. This sample will be used to produce more T. Harzianum for rice cultivation. One of the T.Harzianum treated rice hosts was coated with gold and subjected to SEM observation. Very high populated T. Harzianum fungi were observed. It was  dominated by hyphae. No conidia and conidiophores were spotted. Instead, quite a high density of spherical and oval shape spores was observed. Such a high density of T.Harzianum will certainly meet the requirement for an efficient application in the cultivation field. It would also be interesting to see the interaction between such a highly populated T.Harzianum  with other fungi or pathogens in understanding the role of Trichoderma as an antipathogen

Sign in / Sign up

Export Citation Format

Share Document