Modeling the impact of the indigenous microbial population on the maximum population density of Salmonella on alfalfa

2013 ◽  
Vol 29 (7) ◽  
pp. 1301-1305 ◽  
Author(s):  
Hajo Rijgersberg ◽  
Eelco Franz ◽  
Masja Nierop Groot ◽  
Seth-Oscar Tromp
Author(s):  
Lina Díaz-Castro ◽  
Héctor Cabello-Rangel ◽  
Kurt Hoffman

Background. The doubling time is the best indicator of the course of the current COVID-19 pandemic. The aim of the present investigation was to determine the impact of policies and several sociodemographic factors on the COVID-19 doubling time in Mexico. Methods. A retrospective longitudinal study was carried out across March–August, 2020. Policies issued by each of the 32 Mexican states during each week of this period were classified according to the University of Oxford Coronavirus Government Response Tracker (OxCGRT), and the doubling time of COVID-19 cases was calculated. Additionally, variables such as population size and density, poverty and mobility were included. A panel data model was applied to measure the effect of these variables on doubling time. Results. States with larger population sizes issued a larger number of policies. Delay in the issuance of policies was associated with accelerated propagation. The policy index (coefficient 0.60, p < 0.01) and the income per capita (coefficient 3.36, p < 0.01) had a positive effect on doubling time; by contrast, the population density (coefficient −0.012, p < 0.05), the mobility in parks (coefficient −1.10, p < 0.01) and the residential mobility (coefficient −4.14, p < 0.01) had a negative effect. Conclusions. Health policies had an effect on slowing the pandemic’s propagation, but population density and mobility played a fundamental role. Therefore, it is necessary to implement policies that consider these variables.


Mathematics ◽  
2021 ◽  
Vol 9 (9) ◽  
pp. 969
Author(s):  
Lei Shen ◽  
Xi Zhang ◽  
Hongda Liu ◽  
Pinbo Yao

With the rise of a new generation of technology and industrial changes, the service-oriented manufacturing industry has become the direction of future development. With the background of new manufacturing, this paper constructs an economic development threshold model of employment density of consumer goods industry based on data from Shanghai and Tokyo from 2007 to 2016, and empirically analyzes the impact of the employment density of the consumer goods industry on urban economic development under different population densities. At the same time, by comparing the experience of Tokyo, the development status and prospects of Shanghai’s consumer goods industry are explored. The study found that the threshold of Tokyo’s consumer goods industry is 0.608. When population density is lower than this threshold, the consumer goods industry continues to promote the economic development of Tokyo; however, when the population density is higher than this threshold, the consumer goods industry begins to inhibit the economic development of Tokyo. The Shanghai consumer goods industry threshold is 0.329. Under the threshold, most of the consumer goods industry contributions to the economy are negative, but above the threshold, they begin to show a positive trend. The inflection point of the effect curve of Tokyo’s consumer goods industry on economic development has appeared, but the inflection point of Shanghai’s consumer goods industry has not yet appeared. Compared with Tokyo, the economic vitality of Shanghai’s consumer goods industry has not yet been fully released. With the continued increase of population density in Shanghai, the growth potential of the consumer goods industry is huge, and it is expected to reshape the flourishing age of Shanghai’s light industry brand.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Mickael Teixeira Alves ◽  
Nick G. H. Taylor ◽  
Hannah J. Tidbury

AbstractPersistence of wild Pacific oyster, Magallana gigas, also known as Crassostrea gigas, has been increasingly reported across Northern European waters in recent years. While reproduction is inhibited by cold waters, recent warm summer temperature has increased the frequency of spawning events. Although correlation between the increasing abundance of Pacific oyster reefs in Northern European waters and climate change is documented, persistence of wild populations may also be influenced by external recruitment from farmed populations and other wild oyster populations, as well as on competition for resources with aquaculture sites. Our understanding of the combined impact of the spawning frequency, external recruitment, and competition on wild population persistence is limited. This study applied an age-structured model, based on ordinary differential equations, to describe an oyster population under discrete temperature-related dynamics. The impact of more frequent spawning events, external recruitment, and changes in carrying capacity on Pacific oyster density were simulated and compared under theoretical scenarios and two case studies in Southern England. Results indicate that long term persistence of wild oyster populations towards carrying capacity requires a high frequency of spawning events but that in the absence of spawning, external recruitment from farmed populations and other wild oyster populations may act to prevent extinction and increase population density. However, external recruitment sources may be in competition with the wild population so that external recruitment is associated with a reduction in wild population density. The implications of model results are discussed in the context of wild oyster population management.


2012 ◽  
Vol 90 (9) ◽  
pp. 1149-1160 ◽  
Author(s):  
J.C. Winternitz ◽  
M.J. Yabsley ◽  
S.M. Altizer

Parasites can both influence and be affected by host population dynamics, and a growing number of case studies support a role for parasites in causing or amplifying host population cycles. In this study, we examined individual and population predictors of gastrointestinal parasitism on wild cyclic montane voles ( Microtus montanus (Peale, 1848)) to determine if evidence was consistent with theory implicating parasites in population cycles. We sampled three sites in central Colorado for the duration of a multiannual cycle and recorded the prevalence and intensity of directly transmitted Eimeria Schneider, 1875 and indirectly transmitted cestodes from a total of 267 voles. We found significant associations between host infection status, individual traits (sex, age, and reproductive status) and population variables (site, trapping period, and population density), including a positive association between host density and cestode prevalence, and a negative association between host density and Eimeria prevalence. Both cestode and Eimeria intensity correlated positively with host age, reproductive status, and population density, but neither parasite was associated with poorer host condition. Our findings suggest that parasites are common in this natural host, but determining their potential to influence montane vole cycles requires future experimental studies and long-term monitoring to determine the fitness consequences of infection and the impact of parasite removal on host dynamics.


2016 ◽  
Vol 8 (1) ◽  
pp. 67-83 ◽  
Author(s):  
Mimi Stith ◽  
Alessandra Giannini ◽  
John del Corral ◽  
Susana Adamo ◽  
Alex de Sherbinin

Abstract A spatial analysis is presented that aims to synthesize the evidence for climate and social dimensions of the “regreening” of the Sahel. Using an independently constructed archival database of donor-funded interventions in Burkina Faso, Mali, Niger, and Senegal in response to the persistence of drought in the 1970s and 1980s, the spatial distribution of these interventions is examined in relation to population density and to trends in precipitation and in greenness. Three categories of environmental change are classified: 1) regions at the northern grassland/shrubland edge of the Sahel where NDVI varies interannually with precipitation, 2) densely populated cropland regions of the Sahel where significant trends in precipitation and NDVI decouple at interannual time scales, and 3) regions at the southern savanna edge of the Sahel where NDVI variation is independent of precipitation. Examination of the spatial distribution of environmental change, number of development projects, and population density brings to the fore the second category, covering the cropland areas where population density and regreening are higher than average. While few, regions in this category coincide with emerging hotspots of regreening in northern Burkina Faso and southern central Niger known from case study literature. In examining the impact of efforts to rejuvenate the Sahelian environment and livelihoods in the aftermath of the droughts of the 1970s and 1980s against the backdrop of a varying and uncertain climate, the transition from desertification to regreening discourses is framed in the context of adaptation to climate change.


Author(s):  
Niayesh Afshordi ◽  
Benjamin Holder ◽  
Mohammad Bahrami ◽  
Daniel Lichtblau

The SARS-CoV-2 pandemic has caused significant mortality and morbidity worldwide, sparing almost no community. As the disease will likely remain a threat for years to come, an understanding of the precise influences of human demographics and settlement, as well as the dynamic factors of climate, susceptible depletion, and intervention, on the spread of localized epidemics will be vital for mounting an effective response. We consider the entire set of local epidemics in the United States; a broad selection of demographic, population density, and climate factors; and local mobility data, tracking social distancing interventions, to determine the key factors driving the spread and containment of the virus. Assuming first a linear model for the rate of exponential growth (or decay) in cases/mortality, we find that population-weighted density, humidity, and median age dominate the dynamics of growth and decline, once interventions are accounted for. A focus on distinct metropolitan areas suggests that some locales benefited from the timing of a nearly simultaneous nationwide shutdown, and/or the regional climate conditions in mid-March; while others suffered significant outbreaks prior to intervention. Using a first-principles model of the infection spread, we then develop predictions for the impact of the relaxation of social distancing and local climate conditions. A few regions, where a significant fraction of the population was infected, show evidence that the epidemic has partially resolved via depletion of the susceptible population (i.e., “herd immunity”), while most regions in the United States remain overwhelmingly susceptible. These results will be important for optimal management of intervention strategies, which can be facilitated using our online dashboard.


2018 ◽  
Vol 3 (2) ◽  
pp. 170-178
Author(s):  
Lidia Agustina Rumaal ◽  
Jehunias L. Tanesib ◽  
Jonshon Tarigan

Abstrak Telah dilakukan pemetaan daerah rawan tsunami berdasarkan estimasi waktu tiba gelombang dan tutupan lahan di Kabupaten Kupang Provinsi Nusa Tenggara Timur menggunakan aplikasi Penginderaan Jauh dan Sistem Informasi Geografi. Penelitian ini bertujuan untuk mengidentifikasi, memetakan daerah rawan tsunami dan tingkat kerawanannya menurut estimasi waktu tiba gelombang dan tutupan lahan sebagai upaya mitigasi dampak bencana tsunami terhadap kepadatan penduduk. Metode penelitian secara umum dibagi dalam empat tahap utama yaitu pembangunan basis data berupa pembuatan peta tutupan lahan, peta gempa dan peta batimetri. Analisis data kerawanan dari peta tutupan lahan dan etimasi waktu tiba gelombang, penyajian hasil data dalam bentuk tingkat kerawanan masing-masing peta dan analisis hasil penelitian berupa tingkat kerawanan secara kualitatif masing-masing daerah titik pantau menurut peta tutupan lahan maupun estimasi waktu tiba gelombang. Selain itu, dampak kerawanan tsunami diklasifikasikan menurut tingkat kepadatan penduduk untuk kebutuhan mitigasi sebagai berikut Kecamatan Kupang Timur, Kupang Barat, Sulamu, Amfoang Timur, Semau, Semau Selatan, Amfoang Utara, Amfoang Barat Daya, Amfoang Barat Laut dan Fatuleu Barat. Kata kunci : Peta rawan tsunami, Penginderaan Jauh, Sistem Informasi Geografi, Estimasi Waktu Tiba Gelombang  Abstract Mapping of hazard tsunami areas based on estimation of arrival time of wave and land cover in Kupang Regency of East Nusa Tenggara Province using remote sensing application and geographic information system has been done. The  aims of this research are to mapping the hazard tsunami area and tsunami vulnerability level in Kupang Regency East Nusa Tenggara according to the estimated arrival time of the wave and land cover as an effort to mitigate the impact of the tsunami disaster on population density. These generally devided into four main phase namely development of database in the form of land cover map , seismic maps and bathymetry maps, data analysis of research results in the form of qualitative vulnerability of each monitoring area according to land cover map and estimated wave arrival time. Presentation of data results in the form of vulnerability level of each map and analysis and results analysis of research the form of vulnerability level of each map and analysis of research results in the form of qualitative vulnerability of each monitoring area according to land cover map and estimated wave arrival time. And then, the impact of tsunami vulnerability is classified according to population density levels for mitigation needs as follows Kupang Timur, Kupang Barat, Sulamu, Amfoang Timur, Semau, Semau Selatan, Amfoang Utara, Amfoang Barat Daya, Amfoang Barat Laut and Fatuleu Barat. Keywords: Tsunami Hazard Map, Remote Sensing, Geographic Information System, Estimated Time of arrival Wave


Author(s):  
Kevin C Ma ◽  
Tatum D Mortimer ◽  
Allison L Hicks ◽  
Nicole E Wheeler ◽  
Leonor Sánchez-Busó ◽  
...  

AbstractNeisseria gonorrhoeae is an urgent public health threat due to rapidly increasing incidence and antibiotic resistance. In contrast with the trend of increasing resistance, clinical isolates that have reverted to susceptibility regularly appear, prompting questions about which pressures compete with antibiotics to shape gonococcal evolution. Here, we used genome-wide association on the largest collection of N. gonorrhoeae isolates to date (n=4852) to identify loss-of-function (LOF) mutations in the efflux pump mtrCDE operon as a mechanism of increased antibiotic susceptibility and demonstrate that these mutations are overrepresented in cervical isolates relative to urethral isolates (odds ratio (OR) = 3.74, 95% CI [1.98-6.70]). In support of a model in which pump expression incurs a fitness cost in this niche, cervical isolates were also enriched relative to urethral isolates in LOF mutations in the mtrCDE activator mtrA (OR = 8.60, 95% CI [4.96-14.57]) and in farA, a subunit of the FarAB efflux pump (OR = 6.25, 95% CI [3.90-9.83]). In total, approximately 2 in 5 cervical isolates (42.6%) contained a LOF mutation in either the efflux pump components mtrC or farA or the activator mtrA. Our findings extend beyond N. gonorrhoeae to other Neisseria: mtrC LOF mutations are rare (<1%) in the primarily nasopharyngeal-colonizing N. meningitidis in a collection of 14,798 genomes but enriched in a heterosexual urethritis-associated lineage (8.6%, p = 9.90×10−5), indicating that efflux pump downregulation contributes broadly to the adaptation of pathogenic Neisseria to the female urogenital tract. Overall, our findings highlight the impact of integrating microbial population genomics with host metadata and demonstrate how host environmental pressures can lead to increased antibiotic susceptibility.


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