scholarly journals Type studies and fourteen new North American species of Cortinarius section Anomali reveal high continental species diversity

2021 ◽  
Vol 20 (11) ◽  
pp. 1399-1439
Author(s):  
Bálint Dima ◽  
Kare Liimatainen ◽  
Tuula Niskanen ◽  
Dimitar Bojantchev ◽  
Emma Harrower ◽  
...  
Keyword(s):  
Species Diversity ◽  
North America ◽  
North American ◽  
Sequence Data ◽  
Relevant Information ◽  
Its Sequence ◽  
Nrdna Its ◽  
Phylogenetic Species ◽  
The North ◽  
Type Studies

AbstractSection Anomali is a species-rich group in North America belonging to Cortinarius, the most diverse genus in the Agaricales. This study is based on extensive morphological investigations and molecular methods using 191 nrDNA ITS sequence data and recovered 43 phylogenetic species from which 14 are described here as new to science. We sequenced ten type materials which belonged to eight species. The synonymy of C. caesiellus with C. albidipes and C. copakensis with C. albocyaneus is proposed here. The North American occurrence of four species (C. albocyaneus, C. anomalus, C. caninus, and C. tabularis), so far known only from Europe, was confirmed. Thirteen species were not formally described here due to lack of relevant information. An identification key to the known Anomali species in North America is provided.

scholarly journals Molecular systematics of some North American species of Diplostomum (Digenea) based on rDNA-sequence data and comparisons with European congeners

2002 ◽  
Vol 80 (12) ◽  
pp. 2207-2217 ◽  
Author(s):  
Daniel E Galazzo ◽  
Selvadurai Dayanandan ◽  
David J Marcogliese ◽  
J Daniel McLaughlin
Keyword(s):  
North America ◽  
North American ◽  
Sequence Data ◽  
Intestinal Parasites ◽  
Distinct Species ◽  
North American Species ◽  
Similar Species ◽  
The North ◽  
Diplostomum Spathaceum ◽  
Rdna Sequence Data

The systematics of Diplostomum species, common intestinal parasites of piscivorous birds, has long been problematic, owing to phenotypic plasticity and the paucity of morphological features that are often subject to age- and host-induced variation. We sequenced the ITS1–5.8S–ITS2 regions of the rDNA from adult Diplostomum huronense, Diplostomum indistinctum, and Diplostomum baeri obtained from experimentally infected ring-bill gulls (Larus delawarensis) and compared them with partial ITS1 sequences from several species of Diplostomum in GenBank. The three North American species were distinguishable on the basis of ITS sequences. Sequences from D. huronense differed from those of D. indistinctum at 12 sites in ITS1 and 4 sites in ITS2, supporting morphological and morphometric data that indicate the two are distinct species. Sequences of D. huronense and D. indistinctum differed from those of D. baeri at 27 and 24 sites, respectively, in ITS1 and 15 and 12 sites, respectively, in ITS2. Phylogenetic analysis of partial ITS1 sequences revealed that the North American and European species of Diplostomum formed separate groups, with the former being basal to the latter. The results indicated that D. huronense and D. indistinctum from North America are distinct from Diplostomum spathaceum and other similar species from Europe. Furthermore, sequences from specimens identified as D. baeri from North America differed from those of D. baeri from Europe by 3.8% in ITS1 (23 sites). While morphologically similar, the two are not conspecific. Sequences of the North American species have been deposited in GenBank (AY 123042–123044).

scholarly journals Molecular Evidence for an Asian Origin and a Unique Westward Migration of Species in the Genus Castanea via Europe to North America

HortScience ◽  
2006 ◽  
Vol 41 (4) ◽  
pp. 1006B-1006
Author(s):  
Ping Lang ◽  
Fenny Dane ◽  
Thomas L. Kubisiak ◽  
Hongwen Huang
Keyword(s):  
North America ◽  
North American ◽  
Sequence Data ◽  
Morphological Evolution ◽  
North American Species ◽  
Molecular Evidence ◽  
Westward Expansion ◽  
Dna Sequence Data ◽  
The North ◽  
Sister Clade

The genus Castanea (Fagaceae), which contains three sections and seven species, is widely distributed in the deciduous forests of the Northern Hemisphere. The phylogeny of Castanea was estimated using DNA sequence data from five different regions of the chloroplast genome. Sequencing results support the genus Castanea as a paraphyletic group with C. crenata, the Japanese chestnut, representing an early divergence in the genus. The three Chinese species form a strongly supported sister clade to the North American and European clade. A unique westward expansion of extant Castanea species is hypothesized with Castanea originating in eastern Asia, an initial diversification within Asia during the Eocene, followed by intercontinental dispersion and divergence between the Chinese and European/North American species during the Oligocene and a split between the European and North American species in the early Miocene. The differentiation within North America and China might have occurred in late Miocene or early Pliocence. The North America species are supported as a clade with C. pumila var. ozarkensis, the Ozark chinkapin, as the basal lineage, sister to the group comprising C. pumila var. pumila, the Allegheny chinkapin, and C. dentata, the American chestnut. Morphological evolution of one nut per bur in the genus may have occurred independently on two continents.

Diversification of the North American Doellingeria-Eucephalus Clade (Astereae: Asteraceae) Inferred from Molecular and Morphological Evidence

2019 ◽  
Vol 44 (4) ◽  
pp. 930-942
Author(s):  
Geraldine A. Allen ◽  
Luc Brouillet ◽  
John C. Semple ◽  
Heidi J. Guest ◽  
Robert Underhill
Keyword(s):  
North American ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Sister Group ◽  
Morphological Evidence ◽  
South American ◽  
New Combinations ◽  
The North ◽  
Hybridization Event ◽  
Ancient Hybridization

Abstract—Doellingeria and Eucephalus form the earliest-diverging clade of the North American Astereae lineage. Phylogenetic analyses of both nuclear and plastid sequence data show that the Doellingeria-Eucephalus clade consists of two main subclades that differ from current circumscriptions of the two genera. Doellingeria is the sister group to E. elegans, and the Doellingeria + E. elegans subclade in turn is sister to the subclade containing all remaining species of Eucephalus. In the plastid phylogeny, the two subclades are deeply divergent, a pattern that is consistent with an ancient hybridization event involving ancestral species of the Doellingeria-Eucephalus clade and an ancestral taxon of a related North American or South American group. Divergence of the two Doellingeria-Eucephalus subclades may have occurred in association with northward migration from South American ancestors. We combine these two genera under the older of the two names, Doellingeria, and propose 12 new combinations (10 species and two varieties) for all species of Eucephalus.

scholarly journals Progress in Diagnosing Primary Ciliary Dyskinesia: The North American Perspective

Diagnostics ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1278
Author(s):  
Michael Glenn O’Connor ◽  
Amjad Horani ◽  
Adam J. Shapiro
Keyword(s):  
Genetic Testing ◽  
North America ◽  
North American ◽  
Primary Ciliary Dyskinesia ◽  
Clinical Phenotype ◽  
The United States ◽  
Diagnostic Process ◽  
The North ◽  
Diagnostic Guideline ◽  
Ciliary Dyskinesia

Primary Ciliary Dyskinesia (PCD) is a rare, under-recognized disease that affects respiratory ciliary function, resulting in chronic oto-sino-pulmonary disease. The PCD clinical phenotype overlaps with other common respiratory conditions and no single diagnostic test detects all forms of PCD. In 2018, PCD experts collaborated with the American Thoracic Society (ATS) to create a clinical diagnostic guideline for patients across North America, specifically considering the local resources and limitations for PCD diagnosis in the United States and Canada. Nasal nitric oxide (nNO) testing is recommended for first-line testing in patients ≥5 years old with a compatible clinical phenotype; however, all low nNO values require confirmation with genetic testing or ciliary electron micrograph (EM) analysis. Furthermore, these guidelines recognize that not all North American patients have access to nNO testing and isolated genetic testing is appropriate in cases with strong clinical PCD phenotypes. For unresolved diagnostic cases, referral to a PCD Foundation accredited center is recommended. The purpose of this narrative review is to provide insight on the North American PCD diagnostic process, to enhance the understanding of and adherence to current guidelines, and to promote collaboration with diagnostic pathways used outside of North America.

New multituberculate mammal from the Early Cretaceous of eastern North America

2013 ◽  
Vol 50 (3) ◽  
pp. 315-323 ◽  
Author(s):  
Richard L. Cifelli ◽  
Cynthia L. Gordon ◽  
Thomas R. Lipka
Keyword(s):  
North America ◽  
Iberian Peninsula ◽  
Early Cretaceous ◽  
North American ◽  
Lower Cretaceous ◽  
Late Jurassic ◽  
Relative Length ◽  
Central Position ◽  
Eastern North America ◽  
The North

Multituberculates, though among the most commonly encountered mammalian fossils of the Mesozoic, are poorly known from the North American Early Cretaceous, with only one taxon named to date. Herein we describe Argillomys marylandensis, gen. et sp. nov., from the Early Cretaceous of Maryland, based on an isolated M2. Argillomys represents the second mammal known from the Arundel Clay facies of the Patuxent Formation (Lower Cretaceous: Aptian). Though distinctive in its combination of characters (e.g., enamel ornamentation consisting of ribs and grooves only, cusp formula 2:4, presence of distinct cusp on anterobuccal ridge, enlargement of second cusp on buccal row, central position of ultimate cusp in lingual row, great relative length), the broader affinities of Argillomys cannot be established because of non-representation of the antemolar dentition. Based on lack of apomorphies commonly seen among Cimolodonta (e.g., three or more cusps present in buccal row, fusion of cusps in lingual row, cusps strongly pyramidal and separated by narrow grooves), we provisionally regard Argillomys as a multituberculate of “plagiaulacidan” grade. Intriguingly, it is comparable in certain respects to some unnamed Paulchoffatiidae, a family otherwise known from the Late Jurassic – Early Cretaceous of the Iberian Peninsula.

A Kinematic Reconstruction of Jurassic ocean spreading from the ophiolites of California, the western U.S. using structural geology and paleomagnetism.

2021 ◽  
Author(s):  
Cemil Arkula ◽  
Nalan Lom ◽  
John Wakabayashi ◽  
Grant Rea-Downing ◽  
Mark Dekkers ◽  
...  
Keyword(s):  
North America ◽  
Relative Position ◽  
North American ◽  
Fault System ◽  
Paleomagnetic Data ◽  
Geochemical Data ◽  
Ophiolite Belt ◽  
The North ◽  
Western Us ◽  
Jurassic Ophiolites

<p>The western edge of the North America plate contains geological records that formed during the long-lived convergence between plates of the Panthalassa Ocean and North America. The geology of different segments along western North America indicates different polarities (eastward and westward) for subducted slabs and thereby various tectonic histories and settings. The western United States (together with Mexico) plays a key role in this debate, many geologic interpretations assume continuous eastward subduction in contrast to observations within proximal geologic segments and tomographic images of the lower mantle below North America and the eastern Pacific Ocean which suggest a more complex subduction history. In this study, we aim to evaluate the plate tectonic setting in which the Jurassic ophiolites of California formed. Geochemical data from these ophiolites suggest that they formed above a nascent intra-oceanic or continental margin subduction zone. We first developed a kinematic reconstruction of the western US geology back to the Jurassic based on published structural geological data. Importantly, we update the reconstruction of the various branches of the San Andreas fault system to determine the relative position of the ophiolite fragments and adopt a previous restoration of Basin and Range extension which we expand northward towards Washington state. We then reconstruct North American margin deformation associated with Cretaceous to Paleogene shortening and strike-slip faulting. We find no clear candidates in the geological record that may have accommodated major subduction between the Jurassic ophiolite belt and the North American margin and consequently concur with the school of thought that considers that the ophiolite belt, as well as the underlying subduction-accretionary Franciscan Complex, likely formed in the North American fore-arc. We collected paleomagnetic data to reconstruct the spreading direction of the Jurassic Californian ophiolites, by providing new paleomagnetic data from sheeted dykes of the Josephine and Mt. Diablo Ophiolites. These suggest a NE-SW paleo-ridge orientation, oblique to the North American margin which may be explained by partitioning of a dextral component of subduction obliquity relative to North America. We used this spreading direction in combination with published ages of the ophiolites and our restoration of the relative position of these ophiolites prior to post-Jurassic deformation to construct a ridge-transform system at which the Jurassic ophiolites accreted. The results will be used to evaluate which parts of the subduction systems that existed in the eastern Panthalassa Ocean may reside in the western US, and which parts may be better sought in the northern Canadian Segment or/and in the southern Caribbean region.</p>

scholarly journals Contrastive Influence of ENSO and PNA on Variability and Predictability of North American Winter Precipitation

2019 ◽  
Vol 32 (19) ◽  
pp. 6271-6284 ◽  
Author(s):  
Xiaofan Li ◽  
Zeng-Zhen Hu ◽  
Ping Liang ◽  
Jieshun Zhu
Keyword(s):  
North America ◽  
Surface Temperature ◽  
Sea Surface Temperature ◽  
North American ◽  
North Pacific ◽  
Winter Precipitation ◽  
Sea Surface ◽  
The North ◽  
Remote Forcing ◽  
The North Pacific

Abstract In this work, the roles of El Niño–Southern Oscillation (ENSO) in the variability and predictability of the Pacific–North American (PNA) pattern and precipitation in North America in winter are examined. It is noted that statistically about 29% of the variance of PNA is linearly linked to ENSO, while the remaining 71% of the variance of PNA might be explained by other processes, including atmospheric internal dynamics and sea surface temperature variations in the North Pacific. The ENSO impact is mainly meridional from the tropics to the mid–high latitudes, while a major fraction of the non-ENSO variability associated with PNA is confined in the zonal direction from the North Pacific to the North American continent. Such interferential connection on PNA as well as on North American climate variability may reflect a competition between local internal dynamical processes (unpredictable fraction) and remote forcing (predictable fraction). Model responses to observed sea surface temperature and model forecasts confirm that the remote forcing is mainly associated with ENSO and it is the major source of predictability of PNA and winter precipitation in North America.

scholarly journals Novel Highly Pathogenic Avian A(H5N2) and A(H5N8) Influenza Viruses of Clade 2.3.4.4 from North America Have Limited Capacity for Replication and Transmission in Mammals

mSphere ◽  
2016 ◽  
Vol 1 (2) ◽  
Author(s):  
Bryan S. Kaplan ◽  
Marion Russier ◽  
Trushar Jeevan ◽  
Bindumadhav Marathe ◽  
Elena A. Govorkova ◽  
...  
Keyword(s):  
North America ◽  
Avian Influenza ◽  
North American ◽  
Influenza Viruses ◽  
Morbidity And Mortality ◽  
Avian Influenza Viruses ◽  
Highly Pathogenic ◽  
The North ◽  
Domestic Poultry ◽  
The Impact

ABSTRACT Highly pathogenic H5 influenza viruses have been introduced into North America from Asia, causing extensive morbidity and mortality in domestic poultry. The introduced viruses have reassorted with North American avian influenza viruses, generating viral genotypes not seen on other continents. The experiments and analyses presented here were designed to assess the impact of this genetic diversification on viral phenotypes, particularly as regards mammalian hosts, by comparing the North American viruses with their Eurasian precursor viruses. Highly pathogenic influenza A(H5N8) viruses from clade 2.3.4.4 were introduced to North America by migratory birds in the fall of 2014. Reassortment of A(H5N8) viruses with avian viruses of North American lineage resulted in the generation of novel A(H5N2) viruses with novel genotypes. Through sequencing of recent avian influenza viruses, we identified PB1 and NP gene segments very similar to those in the viruses isolated from North American waterfowl prior to the introduction of A(H5N8) to North America, highlighting these bird species in the origin of reassortant A(H5N2) viruses. While they were highly virulent and transmissible in poultry, we found A(H5N2) viruses to be low pathogenic in mice and ferrets, and replication was limited in both hosts compared with those of recent highly pathogenic avian influenza (HPAI) H5N1 viruses. Molecular characterization of the hemagglutinin protein from A(H5N2) viruses showed that the receptor binding preference, cleavage, and pH of activation were highly adapted for replication in avian species and similar to those of other 2.3.4.4 viruses. In addition, North American and Eurasian clade 2.3.4.4 H5NX viruses replicated to significantly lower titers in differentiated normal human bronchial epithelial cells than did seasonal human A(H1N1) and highly pathogenic A(H5N1) viruses isolated from a human case. Thus, despite their having a high impact on poultry, our findings suggest that the recently emerging North American A(H5N2) viruses are not expected to pose a substantial threat to humans and other mammals without further reassortment and/or adaptation and that reassortment with North American viruses has not had a major impact on viral phenotype. IMPORTANCE Highly pathogenic H5 influenza viruses have been introduced into North America from Asia, causing extensive morbidity and mortality in domestic poultry. The introduced viruses have reassorted with North American avian influenza viruses, generating viral genotypes not seen on other continents. The experiments and analyses presented here were designed to assess the impact of this genetic diversification on viral phenotypes, particularly as regards mammalian hosts, by comparing the North American viruses with their Eurasian precursor viruses.

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