Comprehensive analysis of wintersweet flower reveals key structural genes involved in flavonoid biosynthetic pathway

Gene ◽  
2018 ◽  
Vol 676 ◽  
pp. 279-289 ◽  
Author(s):  
Nan Yang ◽  
Kaige Zhao ◽  
Xiang Li ◽  
Rong Zhao ◽  
Muhammad z Aslam ◽  
...  
Keyword(s):  
Biosynthetic Pathway ◽  
Comprehensive Analysis ◽  
Structural Genes ◽  
Flavonoid Biosynthetic Pathway

scholarly journals Changes at a Critical Branchpoint in the Anthocyanin Biosynthetic Pathway Underlie the Blue to Orange Flower Color Transition in Lysimachia arvensis

2021 ◽  
Vol 12 ◽  
Author(s):  
Mercedes Sánchez-Cabrera ◽  
Francisco Javier Jiménez-López ◽  
Eduardo Narbona ◽  
Montserrat Arista ◽  
Pedro L. Ortiz ◽  
...  
Keyword(s):  
Differential Expression ◽  
Biosynthetic Pathway ◽  
Biochemical Analysis ◽  
Flower Color ◽  
Careful Examination ◽  
Structural Genes ◽  
Significant Differential Expression ◽  
Flavonoid Biosynthetic Pathway ◽  
Flower Color Polymorphism ◽  
Survival And Reproduction

Anthocyanins are the primary pigments contributing to the variety of flower colors among angiosperms and are considered essential for survival and reproduction. Anthocyanins are members of the flavonoids, a broader class of secondary metabolites, of which there are numerous structural genes and regulators thereof. In western European populations of Lysimachia arvensis, there are blue- and orange-petaled individuals. The proportion of blue-flowered plants increases with temperature and daylength yet decreases with precipitation. Here, we performed a transcriptome analysis to characterize the coding sequences of a large group of flavonoid biosynthetic genes, examine their expression and compare our results to flavonoid biochemical analysis for blue and orange petals. Among a set of 140 structural and regulatory genes broadly representing the flavonoid biosynthetic pathway, we found 39 genes with significant differential expression including some that have previously been reported to be involved in similar flower color transitions. In particular, F3′5′H and DFR, two genes at a critical branchpoint in the ABP for determining flower color, showed differential expression. The expression results were complemented by careful examination of the SNPs that differentiate the two color types for these two critical genes. The decreased expression of F3′5′H in orange petals and differential expression of two distinct copies of DFR, which also exhibit amino acid changes in the color-determining substrate specificity region, strongly correlate with the blue to orange transition. Our biochemical analysis was consistent with the transcriptome data indicating that the shift from blue to orange petals is caused by a change from primarily malvidin to largely pelargonidin forms of anthocyanins. Overall, we have identified several flavonoid biosynthetic pathway loci likely involved in the shift in flower color in L. arvensis and even more loci that may represent the complex network of genetic and physiological consequences of this flower color polymorphism.

scholarly journals Sequence analysis of flavanone 3-hydroxylase and dihydroflavonol 4-reductase genes in wheat with nonstandard coloured caryopses

Genetika ◽  
2019 ◽  
Vol 51 (1) ◽  
pp. 93-102
Author(s):  
Klára Stiasna ◽  
Mária Presinszká ◽  
Tomás Vyhnánek ◽  
Václav Trojan ◽  
Pavel Hanácek ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Plant Material ◽  
Biosynthetic Pathway ◽  
Direct Sequencing ◽  
Triticum Aestivum L ◽  
Sequence Variability ◽  
Structural Genes ◽  
Pcr Product ◽  
Flavonoid Biosynthetic Pathway ◽  
Cloning Strategy

The DNA sequences of chosen structural genes, flavanone 3-hydroxylase (F3H) and dihydroflavonol 4-reductase (DFR), encoding key enzymes from the flavonoid biosynthetic pathway, were studied in this paper. Sequences were gained using different approaches, i.e. direct sequencing from the PCR product for F3H and a cloning strategy for DFR. Five bread wheat (Triticum aestivum L.) genotypes with nonstandard coloured caryopses, purple, blue, and white, were used as plant material. The sequence variability was observed among tested genotypes.

scholarly journals Inheritance of the An2 Gene and Epistatic Interactions in Petunia exserta × P. axillaris Hybrids

2002 ◽  
Vol 127 (6) ◽  
pp. 947-956 ◽  
Author(s):  
R.J. Griesbach
Keyword(s):  
Biosynthetic Pathway ◽  
Regulatory Gene ◽  
Structural Genes ◽  
Epistatic Interactions ◽  
Flavonoid Biosynthetic Pathway ◽  
Substrate Competition

A regulatory gene, An2, controls structural genes within the flavonoid biosynthetic pathway. The inheritance of An2 expression in crosses between P. axillaris (an2) and P. exserta (An2+) was studied. Floral pigmentation was quantitatively inherited and involved the expression of a single regulatory gene (An2) and three structural genes (Hf1, An6 and Fl). White flowers were produced in an2- genotypes; while pigmented flowers were produced in An2+ genotypes. The intensity of pigmentation was determined by the interaction of An2 with An6, Hf1 and Fl, as well as substrate competition between the An6 and Fl encoded enzymes.

scholarly journals Transcriptomic analysis reveals flavonoid biosynthesis of Syringa oblata Lindl. in response to different light intensity

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Yan-Yan Liu ◽  
Xing-Ru Chen ◽  
Jin-Peng Wang ◽  
Wen-Qiang Cui ◽  
Xiao-Xu Xing ◽  
...  
Keyword(s):  
Medicinal Plants ◽  
Light Intensity ◽  
Stress Responses ◽  
Biosynthetic Pathway ◽  
Target Genes ◽  
Integrated Analysis ◽  
The Novel ◽  
Structural Genes ◽  
Light Intensities ◽  
Flavonoid Biosynthetic Pathway

Abstract Background Hazy weather significantly increase air pollution and affect light intensity which may also affect medicinal plants growth. Syringa oblata Lindl. (S. oblata), an effective anti-biofilm medicinal plants, is also vulnerable to changes in plant photoperiods and other abiotic stress responses. Rutin, one of the flavonoids, is the main bioactive ingredient in S. oblata that inhibits Streptococcus suis biofilm formation. Thus, the present study aims to explore the biosynthesis and molecular basis of flavonoids in S. oblata in response to different light intensity. Results In this study, it was shown that compared with natural (Z0) and 25% ~ 35% (Z2) light intensities, the rutin content of S. oblata under 50% ~ 60% (Z1) light intensity increased significantly. In addition, an integrated analysis of metabolome and transcriptome was performed using light intensity stress conditions from two kinds of light intensities which S. oblata was subjected to: Z0 and Z1. The results revealed that differential metabolites and genes were mainly related to the flavonoid biosynthetic pathway. We found out that 13 putative structural genes and a transcription factor bHLH were significantly up-regulated in Z1. Among them, integration analysis showed that 3 putative structural genes including 4CL1, CYP73A and CYP75B1 significantly up-regulated the rutin biosynthesis, suggesting that these putative genes may be involved in regulating the flavonoid biosynthetic pathway, thereby making them key target genes in the whole metabolic process. Conclusions The present study provided helpful information to search for the novel putative genes that are potential targets for S. oblata in response to light intensity.

scholarly journals Expression Characterization of Flavonoid Biosynthetic Pathway Genes and Transcription Factors in Peanut Under Water Deficit Conditions

2021 ◽  
Vol 12 ◽  
Author(s):  
Ghulam Kubra ◽  
Maryam Khan ◽  
Faiza Munir ◽  
Alvina Gul ◽  
Tariq Shah ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Water Deficit ◽  
Biosynthetic Pathway ◽  
Correlational Analysis ◽  
Accumulation Pattern ◽  
Yield Production ◽  
Expression Of Genes ◽  
Flavonoid Biosynthetic Pathway ◽  
Wide Range

Drought is one of the hostile environmental stresses that limit the yield production of crop plants by modulating their growth and development. Peanut (Arachis hypogaea) has a wide range of adaptations to arid and semi-arid climates, but its yield is prone to loss due to drought. Other than beneficial fatty acids and micronutrients, peanut harbors various bioactive compounds including flavonoids that hold a prominent position as antioxidants in plants and protect them from oxidative stress. In this study, understanding of the biosynthesis of flavonoids in peanut under water deficit conditions was developed through expression analysis and correlational analysis and determining the accumulation pattern of phenols, flavonols, and anthocyanins. Six peanut varieties (BARD479, BARI2011, BARI2000, GOLDEN, PG1102, and PG1265) having variable responses against drought stress have been selected. Higher water retention and flavonoid accumulation have been observed in BARI2011 but downregulation has been observed in the expression of genes and transcription factors (TFs) which indicated the maintenance of normal homeostasis. ANOVA revealed that the expression of flavonoid genes and TFs is highly dependent upon the genotype of peanut in a spatiotemporal manner. Correlation analysis between expression of flavonoid biosynthetic genes and TFs indicated the role of AhMYB111 and AhMYB7 as an inhibitor for AhF3H and AhFLS, respectively, and AhMYB7, AhTTG1, and AhCSU2 as a positive regulator for the expression of Ah4CL, AhCHS, and AhF3H, respectively. However, AhbHLH and AhGL3 revealed nil-to-little relation with the expression of flavonoid biosynthetic pathway genes. Correlational analysis between the expression of TFs related to the biosynthesis of flavonoids and the accumulation of phenolics, flavonols, and anthocyanins indicated coregulation of flavonoid synthesis by TFs under water deficit conditions in peanut. This study would provide insight into the role of flavonoid biosynthetic pathway in drought response in peanut and would aid to develop drought-tolerant varieties of peanut.

scholarly journals The Flavonoid Biosynthesis Network in Plants

2021 ◽  
Vol 22 (23) ◽  
pp. 12824
Author(s):  
Weixin Liu ◽  
Yi Feng ◽  
Suhang Yu ◽  
Zhengqi Fan ◽  
Xinlei Li ◽  
...  
Keyword(s):  
Biosynthetic Pathway ◽  
Current Knowledge ◽  
Anthocyanin Biosynthesis ◽  
Basic Structure ◽  
Ring Structure ◽  
Flavonoid Biosynthesis ◽  
Comprehensive Overview ◽  
Flavonoid Biosynthetic Pathway ◽  
Intermediate Metabolites ◽  
Important Intermediate

Flavonoids are an important class of secondary metabolites widely found in plants, contributing to plant growth and development and having prominent applications in food and medicine. The biosynthesis of flavonoids has long been the focus of intense research in plant biology. Flavonoids are derived from the phenylpropanoid metabolic pathway, and have a basic structure that comprises a C15 benzene ring structure of C6-C3-C6. Over recent decades, a considerable number of studies have been directed at elucidating the mechanisms involved in flavonoid biosynthesis in plants. In this review, we systematically summarize the flavonoid biosynthetic pathway. We further assemble an exhaustive map of flavonoid biosynthesis in plants comprising eight branches (stilbene, aurone, flavone, isoflavone, flavonol, phlobaphene, proanthocyanidin, and anthocyanin biosynthesis) and four important intermediate metabolites (chalcone, flavanone, dihydroflavonol, and leucoanthocyanidin). This review affords a comprehensive overview of the current knowledge regarding flavonoid biosynthesis, and provides the theoretical basis for further elucidating the pathways involved in the biosynthesis of flavonoids, which will aid in better understanding their functions and potential uses.

scholarly journals Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway

2019 ◽  
Vol 20 (10) ◽  
pp. 2463 ◽  
Author(s):  
Xiaoqiong Chen ◽  
Yu Tao ◽  
Asif Ali ◽  
Zhenhua Zhuang ◽  
Daiming Guo ◽  
...  
Keyword(s):  
Biosynthetic Pathway ◽  
Flavonoid Biosynthesis ◽  
Differentially Expressed ◽  
Potential Candidate ◽  
Rice Cultivars ◽  
Red Rice ◽  
Flavonoid Pathway ◽  
Network Analyses ◽  
Flavonoid Biosynthetic Pathway ◽  
Colored Rice

Black and red rice are rich in both anthocyanin and proanthocyanin content, which belong to a large class of flavonoids derived from a group of phenolic secondary metabolites. However, the molecular pathways and mechanisms underlying the flavonoid biosynthetic pathway are far from clear. Therefore, this study was undertaken to gain insight into physiological factors that are involved in the flavonoid biosynthetic pathway in rice cultivars with red, black, and white colors. RNA sequencing of caryopsis and isobaric tags for relative and absolute quantification (iTRAQ) analyses have generated a nearly complete catalog of mRNA and expressed proteins in different colored rice cultivars. A total of 31,700 genes were identified, of which 3417, 329, and 227 genes were found specific for red, white, and black rice, respectively. A total of 13,996 unique peptides corresponding to 3916 proteins were detected in the proteomes of black, white, and red rice. Coexpression network analyses of differentially expressed genes (DEGs) and differentially expressed proteins (DEPs) among the different rice cultivars showed significant differences in photosynthesis and flavonoid biosynthesis pathways. Based on a differential enrichment analysis, 32 genes involved in the flavonoid biosynthesis pathway were detected, out of which only CHI, F3H, ANS, and FLS were detected by iTRAQ. Taken together, the results point to differences in flavonoid biosynthesis pathways among different colored rice cultivars, which may reflect differences in physiological functions. The differences in contents and types of flavonoids among the different colored rice cultivars are related to changes in base sequences of Os06G0162500, Os09G0455500, Os09G0455500, and Os10G0536400. Current findings expand and deepen our understanding of flavonoid biosynthesis and concurrently provides potential candidate genes for improving the nutritional qualities of rice.

scholarly journals CtACO1 Overexpression Resulted in the Alteration of the Flavonoids Profile of Safflower

Molecules ◽  
2019 ◽  
Vol 24 (6) ◽  
pp. 1128 ◽  
Author(s):  
Yanhua Tu ◽  
Beixuan He ◽  
Songyan Gao ◽  
Dandan Guo ◽  
Xinlei Jia ◽  
...  
Keyword(s):  
Carboxylic Acid ◽  
Biosynthetic Pathway ◽  
Metabolic Flux ◽  
Cellular Level ◽  
Vital Role ◽  
Acid Oxidase ◽  
Hydroxysafflor Yellow A ◽  
Flavonoid Biosynthetic Pathway ◽  
Varying Environments ◽  
Plant Acclimatization

Background: Flavonoids with various structures play a vital role in plant acclimatization to varying environments as well as in plant growth, development, and reproduction. Exogenous applications of ethylene and 1-aminocyclopropane carboxylic acid (ACC), could affect the accumulation of flavonoids. Very few attempts have been made to investigate the effect of 1-aminocyclopropane carboxylic acid oxidase (ACO), a unique enzyme that catalyzes ACC to ethylene, on genes and metabolites in the flavonoid biosynthetic pathway. In this study, two ACOs in safflower (CtACOs) were cloned, and then transgenic safflower with overexpressed CtACO1 was generated through the Agrobacterium-mediated floral dipping method. Results: CtACO1 and CtACO2 were both characterized by the 2-oxoglutarate binding domain RxS and the ferrous iron binding site HxDxnH as ACOs from other plants. However, the transcript levels of CtACO1 in flowers at stages I, II, III, and IV were all higher than those of CtACO2. At the cellular level, by using electroporation transformation, CtACO1 was found to be localized at the cytomembrane in onion epidermal cells. CtACO1 overexpression had varying effects on genes involved in the ethylene and flavonoid biosynthetic pathways. The metabolites analysis showed that CtACO1 overexpression lines had a higher accumulation of quercetin and its glycosylated derivatives (quercetin 3-β-d-glucoside and rutin). In contrast, the accumulation of quinochalcones (hydroxysafflor yellow A and carthamin), kaempferol glycosylated derivatives (kaempferol-3-O-β-rutinoside and kaempferol-3-O-β-d-glucoside), apigenin, and luteolin in CtACO1 overexpression lines were decreased. Conclusion: This study confirmed the feasibility of applying the floral dipping method to safflower and showed a novel regulatory effect of CtACO1 in the flavonoid biosynthetic pathway. It provides hypothetical and practical groundwork for further research on regulating the overall metabolic flux of flavonoids in safflower, particularly hydroxysafflor yellow A and other quinochalcones, by using appropriate genetic engineering strategies.

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