Hybrid prediction based on SSR-genetic distance, heterosis and combining ability on agronomic traits and yields in sweet and waxy corn

2020 ◽  
Vol 259 ◽  
pp. 108817 ◽  
Author(s):  
Abil Dermail ◽  
Bhalang Suriharn ◽  
Sompong Chankaew ◽  
Jirawat Sanitchon ◽  
Kamol Lertrat
Keyword(s):  
Genetic Distance ◽  
Combining Ability ◽  
Agronomic Traits ◽  
Hybrid Prediction ◽  
Waxy Corn

scholarly journals Multi-omics-based prediction of hybrid performance in canola

2021 ◽  
Author(s):  
Dominic Knoch ◽  
Christian R. Werner ◽  
Rhonda C. Meyer ◽  
David Riewe ◽  
Amine Abbadi ◽  
...  
Keyword(s):  
Hilbert Space ◽  
Genetic Markers ◽  
Reproducing Kernel ◽  
Prediction Models ◽  
Agronomic Traits ◽  
Reproducing Kernel Hilbert Space ◽  
Hybrid Performance ◽  
Hybrid Prediction ◽  
Gaussian Kernels ◽  
Breeding Programmes

Abstract Key message Complementing or replacing genetic markers with transcriptomic data and use of reproducing kernel Hilbert space regression based on Gaussian kernels increases hybrid prediction accuracies for complex agronomic traits in canola. In plant breeding, hybrids gained particular importance due to heterosis, the superior performance of offspring compared to their inbred parents. Since the development of new top performing hybrids requires labour-intensive and costly breeding programmes, including testing of large numbers of experimental hybrids, the prediction of hybrid performance is of utmost interest to plant breeders. In this study, we tested the effectiveness of hybrid prediction models in spring-type oilseed rape (Brassica napus L./canola) employing different omics profiles, individually and in combination. To this end, a population of 950 F1 hybrids was evaluated for seed yield and six other agronomically relevant traits in commercial field trials at several locations throughout Europe. A subset of these hybrids was also evaluated in a climatized glasshouse regarding early biomass production. For each of the 477 parental rapeseed lines, 13,201 single nucleotide polymorphisms (SNPs), 154 primary metabolites, and 19,479 transcripts were determined and used as predictive variables. Both, SNP markers and transcripts, effectively predict hybrid performance using (genomic) best linear unbiased prediction models (gBLUP). Compared to models using pure genetic markers, models incorporating transcriptome data resulted in significantly higher prediction accuracies for five out of seven agronomic traits, indicating that transcripts carry important information beyond genomic data. Notably, reproducing kernel Hilbert space regression based on Gaussian kernels significantly exceeded the predictive abilities of gBLUP models for six of the seven agronomic traits, demonstrating its potential for implementation in future canola breeding programmes.

scholarly journals Combining ability and heterosis for agronomic traits in chili pepper

2012 ◽  
Vol 30 (2) ◽  
pp. 226-233 ◽  
Author(s):  
Rosana Rodrigues ◽  
Leandro SA Gonçalves ◽  
Cintia dos S Bento ◽  
Claudia P Sudré ◽  
Renata R Robaina ◽  
...  
Keyword(s):  
Combining Ability ◽  
Agronomic Traits ◽  
Fruit Weight ◽  
Matter Content ◽  
Soluble Solids ◽  
Dry Matter Content ◽  
Additive Effects ◽  
Dry Fruit ◽  
Potential Use ◽  
Janeiro State

The Capsicum breeding has been developed with emphasis in bell pepper (Capsicum annuum) and few studies are available in other species, especially C. baccatum, which has potential use not only as disease resistance source but also in obtaining new genotypes suitable for farmers' production. In the present work, the combining ability of ten C. baccatum hybrids, along with their five parentals, were tested considering 12 agronomic traits. The hybrids were produced from a complete diallel without reciprocals and assessed in greenhouse conditions, in Campos dos Goytacazes, Rio de Janeiro state, Brazil, during the period July to December 2009. The experimental design was a randomized block with three replications and the following agronomic traits evaluated: canopy diameter (CD), plant height (PH), days to fructification (DF), number of fruits per plant (NFP), mean fruit weight (FW), dry fruit matter weight (FDM), dry matter content (DM), fruit length (FL), fruit diameter (FD), pulp thickness (PT), total soluble solids (TSS) and yield per plant (PP). Significant differences were observed only for general combining ability (GCA) in regard to PH, FW, FDM, DM, PT and TSS, indicating that additive effects were involved on the control of these characters. For CD, DF, NFP, FL, FD and PP, there was significance not only for GCA but also for specific combining ability (SCA) indicating that non-additive and additive effects were important in genetic control of these traits. The hybrids UENF 1629 X UENF 1732, UENF 1616 X UENF 1732 and UENF 1624 X UENF 1639 were considered superior because they have favorable agronomic traits.

scholarly journals Agronomic traits and chemical composition of single hybrids of sweet corn

2011 ◽  
Vol 29 (4) ◽  
pp. 531-536 ◽  
Author(s):  
Angela Kwiatkowski ◽  
Edmar Clemente ◽  
Carlos Alberto Scapim
Keyword(s):  
Chemical Composition ◽  
Crop Yield ◽  
Combining Ability ◽  
Grain Quality ◽  
Sweet Corn ◽  
Agronomic Traits ◽  
Block Design ◽  
Research Station ◽  
Randomized Block Design ◽  
Fixed Model

In Brazil, the greengrocery market of sweet corn has been expanding along the country. In contrast, there have been few agri-industries canning sweet corn (Zea mays) because of the lack of cultivars with agronomic characteristics proper to industrial purposes. The purpose of this study was to evaluate the general combining ability (GCA) of seven inbred lines of sweet corn, and the specific combining ability (SCA) of their hybrid combinations based on their agronomic traits, and the chemical composition of the grain. In the growing season 2006/2007, twenty-one single hybrids were evaluated in the Iguatemi Research Station, Maringá County, Northwestern Paraná, in Brazil using a complete randomized block design with four replications. Data were subjected to the analysis of variance and the genotypes were clustered by the Scott-Knott test. We estimated the GCA and SCA effects using the Griffing's method IV with the fixed model for plant height (PH), height of ear (EH), dehusked ears yield (DEY), reducing (RS) and total sugars (TS), starch (ST), proteins (PTN), ether extract (EE) and fibers (FB). The inbred line L4, which was originated from the 'Doce de Cuba', had the best GCA for crop yield and grain quality and therefore should be used in the next hybrid combinations. The hybrids L4xL5 and L3xL7 were the most promising with regard to crop yield and grain quality.

scholarly journals Construction of a breeding parent population of Populus tomentosa based on SSR genetic distance analysis

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Zhiqiang Han ◽  
Qiang Han ◽  
Yufei Xia ◽  
Xining Geng ◽  
Kang Du ◽  
...  
Keyword(s):  
Genetic Distance ◽  
Combining Ability ◽  
Growth Traits ◽  
Random Mating ◽  
Specific Combining Ability ◽  
Hybrid Breeding ◽  
High Fertility ◽  
Germplasm Resources ◽  
Parent Population ◽  
High Genetic Diversity

Abstract Parent selection is the core of hybrid breeding. The breeding strategy involving the parental identification of superior open-pollinated progeny of Populous tomentosa germplasm resources can significantly improve the efficiency of parental matching. However, due to some factors such as loose powdering time and pollen competitiveness, the offspring derived from open-pollination families which do not undergo completely random mating. Although hybrid combinations based on the male identification method have a high combining ability, this method cannot easily cover the mating combinations of all male and female specimens in the germplasm bank. In addition, the performance of superior plants in open-pollinated families also affects the selection result. If the trait performance value is higher than the population average, then the special combining ability of the reconstructed hybrid combination may be overestimated. Obtaining a solution to the above problems is of great significance for improving the efficiency and accuracy of selecting hybrid parents of P. tomentosa. In this study, 24 pairs of SSR (Simple Sequence Repeats) molecular markers were used to analyze the genetic differentiation of P. tomentosa germplasm resources. The results showed that the genetic variation of the P. tomentosa population was derived from individuals within the provenance, indicating that high genetic diversity is preserved in provenances. The correlation analysis showed that there was a significant positive correlation between the special combining ability of planting height and diameter at breast height (dbh) of the 34 full-sib progeny population and the genetic distance between the parents. Then, the genetic distance between 18 female plants with high fertility and 68 male plants with large pollen quantity was analyzed using this correlation. Fifteen female parents and 12 male parents were screened out, and 52 hybrid combinations with high specific combining ability for growth traits were predicted. Furthermore, for the male parent identification of superior individual plants, we constructed the breeding parent population including 10 female parents and 5 male parents, generating 14 hybrid combinations with potentially high combining ability. The results of the hybridization test showed that the specific combining ability of plant height and dbh was significantly higher than the controlled pollination. Moreover, genetic distance and paternal identification can be used to rapidly and efficiently construct hybrid parent combinations and breeding parent populations.

scholarly journals Heterosis and combining ability of dual-purpose tomato hybrids developed to meet family farmers' needs in Brazil and Mozambique

2015 ◽  
Vol 33 (3) ◽  
pp. 339-344 ◽  
Author(s):  
António JP Graça ◽  
Antonio T Amaral Júnior ◽  
Rosana Rodrigues ◽  
Leandro SA Gonçalves ◽  
Cláudia P Sudré ◽  
...  
Keyword(s):  
Combining Ability ◽  
Agronomic Traits ◽  
Rio Grande ◽  
Total Content ◽  
Soluble Solids ◽  
Dual Purpose ◽  
Tomato Production ◽  
Production Chain ◽  
Family Farmers ◽  
The World

Brazil is the world eighth largest tomato producer and, within the country, the tomato production chain is segmented according to fruit destination: fresh consumption and processing (industrial supply). In contrast, Mozambique does not have a differentiated chain and cultivars are expected to serve both purposes. As there are no tomato breeding programs in Mozambique, cultivars used in the country come from other regions of the world, including Brazil. This paper describes the development and assessment of tomato hybrids with dual-purpose: fresh use and processing. Five tomato genotypes (B13LD, Castone, Massag-72, "Viradoro", and "Rio Grande") were crossed in complete diallel design without reciprocal, and the general and specific combining ability (GCA and SCA) and heterosis were estimated to ten agronomic and fruit quality traits. The offspring of cross B13LD x "Rio Grande" showed potential for use in dual purpose, considering SCA and heterosis estimates for fruit firmness (FF), total content of soluble solids (TSS), number of fruits per plant (NFP) and yield (YLD). Combinations B13LD x Castone, Massag-72 x "Viradoro", and Massag-72 x "Rio Grande", although having no strength to increase YLD, had positive heterosis for FF, TSS, and NFP. The development of high-yielding genotypes, with agronomic traits that meet the expectations of both markets are a breakthrough for Mozambican tomato producers and may also be very convenient to family farmers in Brazil. In both countries, these dual-purpose cultivars represent the freedom of choice to farmers, who will be then in position to allocate their production to the most profitable market segment.

scholarly journals Exploring Heterosis in Melon (Cucumis melo L.)

Plants ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 282
Author(s):  
Marco Napolitano ◽  
Niccolò Terzaroli ◽  
Subash Kashyap ◽  
Luigi Russi ◽  
Elen Jones-Evans ◽  
...  
Keyword(s):  
Genetic Distance ◽  
Combining Ability ◽  
Central Italy ◽  
Genotype By Environment Interaction ◽  
Least Square ◽  
Soluble Solids ◽  
Environment Interaction ◽  
Gene Effects ◽  
F1 Hybrid ◽  
Mahalanobis Distances

Heterosis is the superiority of an F1 hybrid over its parents. Since this phenomenon is still unclear in melon, a half diallel experiment based on eight genetically distant breeding lines was conducted in six environments of Central Italy, assessing commercially important traits: yield, total soluble solids (TSS), and days to ripening (DTR). To estimate the additive (general combining ability; GCA) and the non-additive gene effects (specific combining ability; SCA), yield was analyzed by Griffing’s methods two and four, and the results were compared to the GGE (Genotype plus Genotype by Environment interaction) biplot methodology; TSS and earliness were evaluated only by Griffing’s method four. Overall, GCAs were significantly more relevant than SCAs for all examined traits. Least square means (LsM), mid-parent heterosis (MPH), best-parent heterosis (BPH), as well as Euclidean and Mahalanobis’ distances were calculated and compared with the genetic distance (GD). As a few correlations were found statistically significant (only for TSS), it was difficult to predict the value of a hybrid combination only by knowing the genetic distance of its parents. Despite this, heterosis was observed, indicating either the presence of epistatic effects (additive × additive interactions) and/or an underestimate of SCAs embedded within Griffing’s method. The significant Env × Entries source of variation suggests development of hybrids in specific environments. The results are discussed with a breeding perspective.

scholarly journals Combining Ability Analysis of Blast Disease Resistance and Agronomic Traits in Finger Millet [Eleusine coracana (L.) Gaertn]

2016 ◽  
Vol 8 (11) ◽  
pp. 138 ◽  
Author(s):  
Lawrence Owere ◽  
Pangirayi Tongoona ◽  
John Derera ◽  
Nelson Wanyera
Keyword(s):  
Disease Resistance ◽  
Combining Ability ◽  
Finger Millet ◽  
Gene Action ◽  
Agronomic Traits ◽  
The Other ◽  
Blast Disease ◽  
Additive Gene Action ◽  
Gene Effects ◽  
Additive Gene

<p>Blast disease is the most important biotic constraint to finger millet production. Therefore disease resistant varieties are required. However, there is limited information on combining ability for resistance and indeed other agronomic traits of the germplasm in Uganda. This study was carried out to estimate the combining ability and gene effects controlling blast disease resistance and selected agronomic traits in finger millet. Thirty six crosses were generated from a 9 × 9 half diallel mating design. The seed from the 36 F<sub>1</sub> crosses were advanced by selfing and the F<sub>2</sub> families and their parents were evaluated in three replications. General combining ability (GCA) for head blast resistance and the other agronomic traits were all highly significant (p ≤ 0.01), whereas specific combining ability (SCA) was highly significant for all traits except grain yield and grain mass head<sup>-1</sup>. On partitioning the mean sum of squares, the GCA values ranged from 31.65% to 53.05% for head blast incidence and severity respectively, and 36.18% to 77.22% for the other agronomic traits measured. Additive gene effects were found to be predominant for head blast severity, days to 50% flowering, grain yield, number of productive tillers plant<sup>-1</sup>, grain mass head<sup>-1</sup>, plant height and panicle length. Non-additive gene action was predominant for number of fingers head<sup>-1</sup>, finger width and panicle width. The parents which contributed towards high yield were <em>Seremi 2</em>, <em>Achaki</em>, <em>Otunduru</em>, <em>Bulo</em> and <em>Amumwari</em>. Generally, highly significant additive gene action implied that progress would be made through selection whereas non-additive gene action could slow selection progress and indicated selection in the later generations.</p>

Genetic Assessment of Combining Ability for Seed-Yield and Its Related Traits in Soybean [Glycine max (L.) Merrill]

2020 ◽  
Author(s):  
Gbemisola Oluwayemisi Ige ◽  
Godfree Chigeza ◽  
Subhash Chander ◽  
Abebe Tesfaye Abush ◽  
David Kolawole Ojo ◽  
...  
Keyword(s):  
Seed Yield ◽  
Combining Ability ◽  
Agronomic Traits ◽  
Block Design ◽  
Days To Flowering ◽  
Randomized Complete Block Design ◽  
Glycine Max L ◽  
Improvement Programme ◽  
Genetic Assessment ◽  
Made In

Crosses were made in line × tester mating design between a set of five IITA soybean released varieties and three plant introduced (PI) accessions obtained from World Vegetable Center, Taiwan. In order to produce sufficient seeds, F1 crosses were selfed, subsequently F2 populations along with their parents were planted in a randomized complete block design at two locations in Nigeria with three replications. Agronomic traits viz. days to flowering, days to poding, plant height, number of pods/plant and seed yield/plant were measured. Testers and lines showed significant differences for all the measured traits except days to flowering for testers. Considering the significance and magnitude of general combining ability (GCA) effect, line TGx 1988-5F was observed desirable for earliness, while line TGx 1989-19F was the best combiner for number of pods/plant and seed yield/plant. On the other hand, best tester for seed yield was PI 230970. Crosses TGx 1835-10E × PI 459025B and TGx 1987-62F × PI 459025B had significant and highest SCA effect for seed yield/plant. These two crosses appeared to be most promising for soybean yield improvement programme.

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