Defining the Tools: an Analysis of Laser Scanning Confocal and Wide-Field/Restoration Fluorescence Microscope Imaging

2001 ◽  
Vol 7 (S2) ◽  
pp. 1002-1003
Author(s):  
Jason R. Swedlow ◽  
Paul D. Andrews ◽  
Ke Hu ◽  
David S. RoosT ◽  
John M. Murray

Digital fluorescence microscopy is now a standard tool for determining the localization of cellular components in fixed and living cells. Two fundamentally different imaging technologies are available for imaging fluorescently labelled cells and tissues, in either the fixed or living state. The laser scanning microscope uses a diffraction-limited focused beam to scan the sample and develop an image point by point. in addition, a pinhole placed in a plane confocal to the specimen prevents emitted out-of focus fluorescence from reaching the photomultiplier tube (PMT) detector. By combining spot illumination and selection of infocus fluorescence signal, the laser scanning confocal microscope (LSCM) creates an image of the specimen largely free of out-of-focus blur. By contrast, a wide-field microscope (WFM) illuminates the whole specimen simultaneously and detects the signal with a spatial array of point detectors, usually a charge-coupled device camera (CCD). This approach collects an image of all points of the specimen simultaneously and includes all the out-of-focus blurred light. Subsequent restoration by iterative deconvolution generates an estimate of the specimen, largely free of out-of-focus blur. While many other fluorescence imaging modalities exist, these two methods represent the majority of the fluorescence imaging systems currently in use in biomedical research.

Nanophotonics ◽  
2021 ◽  
Vol 10 (13) ◽  
pp. 3433-3440
Author(s):  
Jung-Dae Kim ◽  
Dong Uk Kim ◽  
Chan Bae Jeong ◽  
Ilkyu Han ◽  
Ji Yong Bae ◽  
...  

Abstract Photothermal imaging is useful for detecting individual nanoparticles and obtaining the absorption spectra. This study presents a wide-field photothermal reflectance spectroscopy technique achieved by incorporating a pump beam, a probe beam, and a charge-coupled device (CCD) camera into a commercial microscopic setup. The presented design does not require precise alignment between the pump and the probe beams and enables the observation of numerous individual nanoparticles during image acquisition. Despite the use of a simple imaging processing method, i.e., a four-bucket method using a CCD camera, sufficient sensitivity for the spectral imaging of a single gold nanorod (20 nm diameter and 84 nm length) is demonstrated. Numerous individual nanoparticles within a wide field of view (240 μm × 180 μm) are detected in an image captures at an imaging measurement speed of 0.02 mm2 min−1. Furthermore, the proposed photothermal reflectance spectroscopy technique can detect the variation in the absorption peak of the measured spectra depending on the aspect ratio of individual nanoparticles within a spectral resolution of 1 nm.


Sensors ◽  
2020 ◽  
Vol 20 (23) ◽  
pp. 6723
Author(s):  
Florian Korinth ◽  
Elmar Schmälzlin ◽  
Clara Stiebing ◽  
Tanya Urrutia ◽  
Genoveva Micheva ◽  
...  

Wide field Raman imaging using the integral field spectroscopy approach was used as a fast, one shot imaging method for the simultaneous collection of all spectra composing a Raman image. For the suppression of autofluorescence and background signals such as room light, shifted excitation Raman difference spectroscopy (SERDS) was applied to remove background artifacts in Raman spectra. To reduce acquisition times in wide field SERDS imaging, we adapted the nod and shuffle technique from astrophysics and implemented it into a wide field SERDS imaging setup. In our adapted version, the nod corresponds to the change in excitation wavelength, whereas the shuffle corresponds to the shifting of charges up and down on a Charge-Coupled Device (CCD) chip synchronous to the change in excitation wavelength. We coupled this improved wide field SERDS imaging setup to diode lasers with 784.4/785.5 and 457.7/458.9 nm excitation and applied it to samples such as paracetamol and aspirin tablets, polystyrene and polymethyl methacrylate beads, as well as pork meat using multiple accumulations with acquisition times in the range of 50 to 200 ms. The results tackle two main challenges of SERDS imaging: gradual photobleaching changes the autofluorescence background, and multiple readouts of CCD detector prolong the acquisition time.


2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Jiang Lan Fan ◽  
Jose A. Rivera ◽  
Wei Sun ◽  
John Peterson ◽  
Henry Haeberle ◽  
...  

AbstractUnderstanding the structure and function of vasculature in the brain requires us to monitor distributed hemodynamics at high spatial and temporal resolution in three-dimensional (3D) volumes in vivo. Currently, a volumetric vasculature imaging method with sub-capillary spatial resolution and blood flow-resolving speed is lacking. Here, using two-photon laser scanning microscopy (TPLSM) with an axially extended Bessel focus, we capture volumetric hemodynamics in the awake mouse brain at a spatiotemporal resolution sufficient for measuring capillary size and blood flow. With Bessel TPLSM, the fluorescence signal of a vessel becomes proportional to its size, which enables convenient intensity-based analysis of vessel dilation and constriction dynamics in large volumes. We observe entrainment of vasodilation and vasoconstriction with pupil diameter and measure 3D blood flow at 99 volumes/second. Demonstrating high-throughput monitoring of hemodynamics in the awake brain, we expect Bessel TPLSM to make broad impacts on neurovasculature research.


Photonics ◽  
2021 ◽  
Vol 8 (7) ◽  
pp. 275
Author(s):  
Herbert Schneckenburger ◽  
Verena Richter

A short overview on 3D live cell imaging is given. Relevant samples are described and various problems and challenges—including 3D imaging by optical sectioning, light scattering and phototoxicity—are addressed. Furthermore, enhanced methods of wide-field or laser scanning microscopy together with some relevant examples and applications are summarized. In the future one may profit from a continuous increase in microscopic resolution, but also from molecular sensing techniques in the nanometer range using e.g., non-radiative energy transfer (FRET).


2021 ◽  
Vol 11 (6) ◽  
pp. 2773
Author(s):  
Hiroaki Yokota ◽  
Atsuhito Fukasawa ◽  
Minako Hirano ◽  
Toru Ide

Over the years, fluorescence microscopy has evolved and has become a necessary element of life science studies. Microscopy has elucidated biological processes in live cells and organisms, and also enabled tracking of biomolecules in real time. Development of highly sensitive photodetectors and light sources, in addition to the evolution of various illumination methods and fluorophores, has helped microscopy acquire single-molecule fluorescence sensitivity, enabling single-molecule fluorescence imaging and detection. Low-light photodetectors used in microscopy are classified into two categories: point photodetectors and wide-field photodetectors. Although point photodetectors, notably photomultiplier tubes (PMTs), have been commonly used in laser scanning microscopy (LSM) with a confocal illumination setup, wide-field photodetectors, such as electron-multiplying charge-coupled devices (EMCCDs) and scientific complementary metal-oxide-semiconductor (sCMOS) cameras have been used in fluorescence imaging. This review focuses on the former low-light point photodetectors and presents their fluorescence microscopy applications and recent progress. These photodetectors include conventional PMTs, single photon avalanche diodes (SPADs), hybrid photodetectors (HPDs), in addition to newly emerging photodetectors, such as silicon photomultipliers (SiPMs) (also known as multi-pixel photon counters (MPPCs)) and superconducting nanowire single photon detectors (SSPDs). In particular, this review shows distinctive features of HPD and application of HPD to wide-field single-molecule fluorescence detection.


Author(s):  
J. Gordon Robertson

Abstract One of the basic parameters of a charge coupled device (CCD) camera is its gain, that is, the number of detected electrons per output Analogue to Digital Unit (ADU). This is normally determined by finding the statistical variances from a series of flat-field exposures with nearly constant levels over substantial areas, and making use of the fact that photon (Poisson) noise has variance equal to the mean. However, when a CCD has been installed in a spectroscopic instrument fed by numerous optical fibres, or with an echelle format, it is no longer possible to obtain illumination that is constant over large areas. Instead of making do with selected small areas, it is shown here that the wide variation of signal level in a spectroscopic ‘flat-field’ can be used to obtain accurate values of the CCD gain, needing only a matched pair of exposures (that differ in their realisation of the noise). Once the gain is known, the CCD readout noise (in electrons) is easily found from a pair of bias frames. Spatial stability of the image in the two flat-fields is important, although correction of minor shifts is shown to be possible, at the expense of further analysis.


2007 ◽  
Vol 130 (1) ◽  
Author(s):  
W. Reinalter ◽  
S. Ulmer ◽  
P. Heller ◽  
T. Rauch ◽  
J.-M. Gineste ◽  
...  

The CNRS-Promes dish∕Stirling system was erected in Jun. 2004 as the last of three country reference units built in the “Envirodish” project. It represents the latest development step of the EuroDish system with many improved components. With a measured peak of 11kW electrical output power, it is also the best performing system so far. The measurement campaign to determine the optical and thermodynamic efficiency of the system is presented. The optical quality of the concentrator and the energy input to the power conversion unit was measured with a classical flux-mapping system using a Lambertian target and a charge coupled device camera system. An efficiency of the concentrator including the intercept losses of 74.4% could be defined for this particular system. For the thermodynamic analysis all the data necessary for a complete energy balance around the Stirling engine were measured or approximated by calculations. For the given ambient conditions during the tests, a Stirling engine efficiency of 39.4% could be measured. The overall efficiency for the conversion of solar to electric energy was 22.5%.


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