Target-Site Point Mutation Conferring Resistance to Trifluralin in Rigid Ryegrass (Lolium rigidum)

Weed Science ◽  
2017 ◽  
Vol 66 (2) ◽  
pp. 246-253 ◽  
Author(s):  
Benjamin Fleet ◽  
Jenna Malone ◽  
Christopher Preston ◽  
Gurjeet Gill
Keyword(s):  
Amino Acid ◽  
Amino Acid Substitution ◽  
Target Site ◽  
Shoot Biomass ◽  
Site Mutation ◽  
Susceptible Population ◽  
Resistant Population ◽  
Target Site Resistance ◽  
Different Populations ◽  
Rigid Ryegrass

Populations of rigid ryegrass suspected of resistance to trifluralin due to control failures exhibited varying levels of susceptibility to trifluralin, with 15 out of 17 populations deemed resistant (>20% plant survival). Detailed dose–response studies were conducted on one highly resistant field-evolved population (SLR74), one known multiply resistant population (SLR31), and one susceptible population (VLR1). On the basis of the dose required to kill 50% of treated plants (LD50), SLR74 had 15-fold greater resistance than VLR1, whereas, the multiply resistant SLR31 had 10-fold greater resistance than VLR1. Similarly, on the basis of dose required to reduce shoot biomass by 50% (GR50), SLR74 had 17-fold greater resistance than VLR1, and SLR31 had 8-fold greater resistance than VLR1. Sequencing of the α-tubulin gene from resistant plants of different populations confirmed the presence of a previously known goosegrass mutation causing an amino acid substitution at position 239 from threonine to isoleucine in resistant population SLR74. This mutation was also found in 4 out of 5 individuals in another highly resistant population TR2 and in 3 out of 5 individuals of TR4. An amino acid substitution from valine to phenylalanine at position 202 was also observed in TR4 (3 out of 5 plants) and TR2 (1 out of 5 plants). There was no target-site mutation identified in SLR31. This study documents the first known case of field-evolved target-site resistance to dinitroaniline herbicides in a population of rigid ryegrass.

Target-site resistance to cyhalofop-butyl in bearded sprangletop (Diplachne fusca) from China

Weed Science ◽  
2019 ◽  
Vol 67 (05) ◽  
pp. 534-538 ◽  
Author(s):  
Shuzhong Yuan ◽  
Yingjie Di ◽  
Yueyang Chen ◽  
Yongrui Chen ◽  
Jingxuan Cai ◽  
...  
Keyword(s):  
Amino Acid Position ◽  
Resistance Mechanisms ◽  
Target Site ◽  
Annual Grass ◽  
Site Mutation ◽  
Resistance Level ◽  
First Case ◽  
Resistant Population ◽  
Target Site Resistance ◽  
Grass Weed

AbstractBearded sprangletop [Diplachne fusca(L.) P. Beauv. ex Roem. & Schult. ssp.fascicularis(Lam.) P. M. Peterson & N. Snow] is a noxious annual grass weed of paddy fields, distributed in coastal regions of the Jiangsu and Hebei provinces in China. Cyhalofop-butyl has been widely used to control grass weeds since 2006 in China. Overreliance on cyhalofop-butyl has led to the evolution of resistant weeds. In this study, the resistance level and cyhalofop-butyl resistance mechanisms were investigated in the putative resistant (JSHH) population. The dose–response experiments showed that the JSHHD.fuscapopulation had evolved 8.9-fold resistance to cyhalofop-butyl. Acetyl-CoA carboxylase (ACCase) sequencing revealed a point mutation (GGC to GCC) at amino acid position 2096, resulting in a Gly-2096-Ala substitution in the resistant population. To our knowledge, this is the first case of cyhalofop-butyl resistance inD.fuscaand the first report of a target-site mutation conferring resistance to ACCase-inhibiting herbicides inD.fusca. In addition, the resistantD.fuscapopulation (JSHH) with the Gly-2096-Ala mutation was cross-resistant to the aryloxyphenoxypropionate herbicide metamifop, the cyclohexanedione herbicide sethoxydim, and the phenylpyrazolin herbicide pinoxaden.

Rigid Ryegrass (Lolium rigidum) Populations Containing a Target Site Mutation in EPSPS and Reduced Glyphosate Translocation Are More Resistant to Glyphosate

Weed Science ◽  
2012 ◽  
Vol 60 (3) ◽  
pp. 474-479 ◽  
Author(s):  
Yazid Bostamam ◽  
Jenna M. Malone ◽  
Fleur C. Dolman ◽  
Peter Boutsalis ◽  
Christopher Preston
Keyword(s):  
Weed Control ◽  
Glyphosate Resistance ◽  
Resistance Mechanisms ◽  
Target Site ◽  
Lolium Rigidum ◽  
Site Mutation ◽  
Susceptible Population ◽  
Intensive Use ◽  
Rigid Ryegrass ◽  
Two Populations

Glyphosate is widely used for weed control in the grape growing industry in southern Australia. The intensive use of glyphosate in this industry has resulted in the evolution of glyphosate resistance in rigid ryegrass. Two populations of rigid ryegrass from vineyards, SLR80 and SLR88, had 6- to 11-fold resistance to glyphosate in dose-response studies. These resistance levels were higher than two previously well-characterized glyphosate-resistant populations of rigid ryegrass (SLR77 and NLR70), containing a modified target site or reduced translocation, respectively. Populations SLR80 and SLR88 accumulated less glyphosate, 12 and 17% of absorbed glyphosate, in the shoot in the resistant populations compared with 26% in the susceptible population. In addition, a mutation within the target enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) where Pro106had been substituted by either serine or threonine was identified. These two populations are more highly resistant to glyphosate as a consequence of expressing two different resistance mechanisms concurrently.

Target-Site Point Mutations Conferring Resistance to ACCase-Inhibiting Herbicides in Smooth Barley (Hordeum glaucum) and Hare Barley (Hordeum leporinum)

Weed Science ◽  
2015 ◽  
Vol 63 (2) ◽  
pp. 408-415 ◽  
Author(s):  
Lovreet S. Shergill ◽  
Jenna Malone ◽  
Peter Boutsalis ◽  
Christopher Preston ◽  
Gurjeet Gill
Keyword(s):  
Fatty Acid Biosynthesis ◽  
Point Mutations ◽  
Target Site ◽  
Shoot Biomass ◽  
Acid Biosynthesis ◽  
Target Site Resistance ◽  
Hordeum Leporinum ◽  
Different Populations ◽  
Acetyl Coenzyme A Carboxylase ◽  
Experienced Difficulty

Acetyl coenzyme A carboxylase (ACCase)-inhibiting herbicides affect fatty acid biosynthesis in plants and are widely used to control smooth and hare barley in dicot crops in Australia. Recently, growers have experienced difficulty in controlling smooth and hare barley with herbicides from this mode of action. Dose–response experiments conducted on five suspected resistant populations confirmed varying levels of resistance to quizalofop and haloxyfop. The level of resistance in these populations was greater than 27-fold to quizalofop and greater than 15-fold to haloxyfop. The quizalofop dose required to reduce shoot biomass by 50% (GR50) for the resistant populations varied from 52.6 to 111.9 g ha−1, and for haloxyfop from 26.5 to 71.3 g ha−1. Sequencing the CT domain of the ACCase gene from resistant plants of different populations confirmed the presence of previously known mutations Ile1781Leu and Gly2096Ala. Amino acid substitution at the 2096 position conferred a greater level of resistance to haloxyfop than the substitution at the 1781 position. This study documents the first known case of field-evolved target-site resistance to ACCase-inhibiting herbicides in Australian populations of smooth barley.

Proline-106 EPSPS Mutation Imparting Glyphosate Resistance in Goosegrass (Eleusine indica) Emerges in South America

Weed Science ◽  
2018 ◽  
Vol 67 (1) ◽  
pp. 48-56 ◽  
Author(s):  
Hudson K. Takano ◽  
Rafael R. Mendes ◽  
Leonardo B. Scoz ◽  
Ramiro F. Lopez Ovejero ◽  
Jamil Constantin ◽  
...  
Keyword(s):  
Amino Acid ◽  
Amino Acid Substitution ◽  
Rapid Detection ◽  
Resistance Mechanism ◽  
Fold Increase ◽  
In Planta ◽  
Eleusine Indica ◽  
Target Site Resistance ◽  
Resistance Trait

AbstractGlyphosate-resistant (GR) goosegrass [Eleusine indica(L.) Gaertn.] was recently identified in Brazil, but its resistance mechanism was unknown. This study elucidated the resistance mechanism in this species and developed a molecular marker for rapid detection of this target-site resistance trait. The resistance factor for the resistant biotype was 4.4-fold compared with the glyphosate-susceptible (GS) in greenhouse dose–response experiments. This was accompanied by a similar (4-fold) difference in the levels of in vitro andin plantashikimate accumulation in these biotypes. However, there was no difference in uptake, translocation, or metabolism of glyphosate between the GS and GR biotypes. Moreover, both biotypes showed similar values for 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) copy number and transcription. Sequencing of a 330-bp fragment of theEPSPSgene identified a single-nucleotide polymorphism that led to a Pro-106-Ser amino acid substitution in the enzyme from the GR biotype. This mutation imparted a 3.8-fold increase in the amount of glyphosate required to inhibit 50% of EPSPS activity, confirming the role of this amino acid substitution in resistance to glyphosate. A quantitative PCR–based genotyping assay was developed for the rapid detection of resistant plants containing this Pro-106-Ser mutation.

scholarly journals Resistance to ACCase inhibitors in Eleusine indica from Brazil involves a target site mutation

2012 ◽  
Vol 30 (3) ◽  
pp. 675-681 ◽  
Author(s):  
M.D. Osuna ◽  
I.C.G.R. Goulart ◽  
R.A. Vidal ◽  
A. Kalsing ◽  
J.P. Ruiz Santaella ◽  
...  
Keyword(s):  
Amino Acid Position ◽  
Target Site ◽  
In Vitro Assays ◽  
Site Mutation ◽  
Eleusine Indica ◽  
Herbicide Resistant ◽  
Frequent Use ◽  
Target Site Resistance ◽  
Grass Weed

Eleusine indica (goosegrass) is a diploid grass weed which has developed resistance to ACCase inhibitors during the last ten years due to the intensive and frequent use of sethoxydim to control grass weeds in soybean crops in Brazil. Plant dose-response assays confirmed the resistant behaviour of one biotype obtaining high resistance factor values: 143 (fenoxaprop), 126 (haloxyfop), 84 (sethoxydim) to 58 (fluazifop). ACCase in vitro assays indicated a target site resistance as the main cause of reduced susceptibility to ACCase inhibitors. PCR-generated fragments of the ACCase CT domain of the resistant and sensitive reference biotype were sequenced and compared. A point mutation was detected within the triplet of aspartate at the amino acid position 2078 (referred to EMBL accession no. AJ310767) and resulted in the triplet of glycine. These results constitute the first report on a target site mutation for a Brazilian herbicide resistant grass weed.

scholarly journals Target-Site Resistance to Glyphosate in Chloris Virgata Biotypes and Alternative Herbicide Options for its Control

Agronomy ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 1266
Author(s):  
Het Samir Desai ◽  
Michael Thompson ◽  
Bhagirath Singh Chauhan
Keyword(s):  
Glyphosate Resistance ◽  
Target Site ◽  
Site Mutation ◽  
Glufosinate Ammonium ◽  
Epsps Gene ◽  
First Case ◽  
Target Site Resistance ◽  
Chloris Virgata ◽  
Moderately Resistant ◽  
Dose Response Study

Due to the overdependence on glyphosate to manage weeds in fallow conditions, glyphosate resistance has developed in various biotypes of several grass weeds, including Chloris virgata Sw. The first case of glyphosate resistance in C. virgata was found in 2015 in Australia, and since then several cases have been confirmed in several biotypes across Australia. Pot studies were conducted with 10 biotypes of C. virgata to determine glyphosate resistance levels. The biotypes were identified as either susceptible, moderately resistant or highly resistant based on the glyphosate dose required to kill 50% of plants. Two glyphosate-susceptible (GS) and two glyphosate-resistant (GR) biotypes were identified by the dose-response study and analyzed for the presence of target-site mutation in the 5–enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene. Performance of alternative herbicides to glyphosate as well as the double-knock herbicide approach was evaluated on the two GS (Ch and SGM2) and two GR (SGW2 and CP2) biotypes. Three herbicides, clethodim, haloxyfop and paraquat, were found to be effective (100% control) against all four biotypes when applied at the 4–5 leaf stage. All the sequential herbicide treatments, such as glyphosate followed by paraquat and glufosinate-ammonium followed by paraquat, provided 100% control of all four biotypes of C. virgata. This study identified effective herbicide options for the control of GR C. virgata and showed that target-site mutations were involved in the resistance of two biotypes to glyphosate (SGW2 and CP2). Results could aid farmers in selecting herbicides to manage C. virgata in their fields.

scholarly journals The Triple Amino Acid Substitution TAP-IVS in the EPSPS Gene Confers High Glyphosate Resistance to the Superweed Amaranthus hybridus

2019 ◽  
Vol 20 (10) ◽  
pp. 2396 ◽  
Author(s):  
Maria J. García ◽  
Candelario Palma-Bautista ◽  
Antonia M. Rojano-Delgado ◽  
Enzo Bracamonte ◽  
João Portugal ◽  
...  
Keyword(s):  
Amino Acid ◽  
Amino Acid Substitution ◽  
Glyphosate Resistance ◽  
Wild Type ◽  
Triple Mutant ◽  
Resistance Level ◽  
Amaranthus Hybridus ◽  
Susceptible Population ◽  
Epsps Gene ◽  
Wide Range

The introduction of glyphosate-resistant (GR) crops revolutionized weed management; however, the improper use of this technology has selected for a wide range of weeds resistant to glyphosate, referred to as superweeds. We characterized the high glyphosate resistance level of an Amaranthus hybridus population (GRH)—a superweed collected in a GR-soybean field from Cordoba, Argentina—as well as the resistance mechanisms that govern it in comparison to a susceptible population (GSH). The GRH population was 100.6 times more resistant than the GSH population. Reduced absorption and metabolism of glyphosate, as well as gene duplication of 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) or its overexpression did not contribute to this resistance. However, GSH plants translocated at least 10% more 14C-glyphosate to the rest of the plant and roots than GRH plants at 9 h after treatment. In addition, a novel triple amino acid substitution from TAP (wild type, GSH) to IVS (triple mutant, GRH) was identified in the EPSPS gene of the GRH. The nucleotide substitutions consisted of ATA102, GTC103 and TCA106 instead of ACA102, GCG103, and CCA106, respectively. The hydrogen bond distances between Gly-101 and Arg-105 positions increased from 2.89 Å (wild type) to 2.93 Å (triple-mutant) according to the EPSPS structural modeling. These results support that the high level of glyphosate resistance of the GRH A. hybridus population was mainly governed by the triple mutation TAP-IVS found of the EPSPS target site, but the impaired translocation of herbicide also contributed in this resistance.

scholarly journals Evolution of Target-Site Resistance to Glyphosate in an Amaranthus palmeri Population from Argentina and Its Expression at Different Plant Growth Temperatures

Plants ◽  
2019 ◽  
Vol 8 (11) ◽  
pp. 512 ◽  
Author(s):  
Kaundun ◽  
Jackson ◽  
Hutchings ◽  
Galloway ◽  
Marchegiani ◽  
...  
Keyword(s):  
Fold Increase ◽  
Glyphosate Resistance ◽  
Target Site ◽  
Amaranthus Palmeri ◽  
Site Mutation ◽  
Medium Temperature ◽  
Soybean Field ◽  
Over Expression ◽  
Target Site Resistance ◽  
The Difference

The mechanism and expression of resistance to glyphosate at different plant growing temperatures was investigated in an Amaranthus palmeri population (VM1) from a soybean field in Vicuña Mackenna, Cordoba, Argentina. Resistance was not due to reduced glyphosate translocation to the meristem or to EPSPS duplication, as reported for most US samples. In contrast, a proline 106 to serine target-site mutation acting additively with EPSPS over-expression (1.8-fold increase) was respectively a major and minor contributor to glyphosate resistance in VM1. Resistance indices based on LD50 values generated using progenies from a cross between 52 PS106 VM1 individuals were estimated at 7.1 for homozygous SS106 and 4.3 for heterozygous PS106 compared with homozygous wild PP106 plants grown at a medium temperature of 24 °C day/18 °C night. A larger proportion of wild and mutant progenies survived a single commonly employed glyphosate rate when maintained at 30 °C day/26 °C night compared with 20 °C day/16 night in a subsequent experiment. Interestingly, the P106S mutation was not identified in any of the 920 plants analysed from 115 US populations, thereby potentially reflecting the difference in A. palmeri control practices in Argentina and USA.

Target Enzyme-Based Resistance to Clethodim inLolium rigidumPopulations in Australia

Weed Science ◽  
2015 ◽  
Vol 63 (4) ◽  
pp. 946-953 ◽  
Author(s):  
Rupinder Kaur Saini ◽  
Jenna Malone ◽  
Christopher Preston ◽  
Gurjeet Gill
Keyword(s):  
Effective Control ◽  
Cross Resistance ◽  
Single Plant ◽  
Susceptible Population ◽  
Ambient Temperatures ◽  
Resistant Population ◽  
Rigid Ryegrass ◽  
Moderately Resistant ◽  
Two Populations ◽  
Biomass Reduction

Clethodim resistance was identified in 12 rigid ryegrass populations from winter cropping regions in four different states of Australia. Clethodim had failed to provide effective control of these populations in the field and resistance was suspected. Dose–response experiments confirmed resistance to clethodim and butroxydim in all populations. During 2012, the LD50of resistant populations ranged from 10.2 to 89.3 g ha−1, making them 3 to 34–fold more resistant to clethodim than the susceptible population. Similarly, GR50of resistant population varied from 8 to 37.1 g ha−1, which is 3 to 13.9–fold higher than the susceptible population. In 2013, clethodim-resistant populations were 7.8 to 35.3–fold more resistant to clethodim than the susceptible population. The higher resistance factor in 2013, especially in moderately resistant populations, could have been associated with lower ambient temperatures during the winter of 2013. These resistant populations had also evolved cross-resistance to butroxydim. The resistant populations required 1.3 to 6.6–fold higher butroxydim dose to achieve 50% mortality and 3 to 27–fold more butroxydim for 50% biomass reduction compared to the standard susceptible population. Sequencing of the target-site ACCase gene identified five known ACCase substitutions (isoleucine-1781-leucine, isoleucine-2041-asparagine, aspartate-2078-glycine, and cysteine-2088-arginine, and glycine-2096-alanine) in these populations. In nine populations, multiple ACCase mutations were present in different individuals. Furthermore, two alleles with different mutations were present in a single plant of rigid ryegrass in two populations.

Effect of malathion on resistance to soil-applied herbicides in a population of rigid ryegrass (Lolium rigidum)

Weed Science ◽  
1999 ◽  
Vol 47 (3) ◽  
pp. 258-261 ◽  
Author(s):  
François J. Tardif ◽  
Stephen B. Powles
Keyword(s):  
Synergistic Effect ◽  
Resistance Management ◽  
Management Approach ◽  
Lolium Rigidum ◽  
Organophosphate Insecticide ◽  
Susceptible Population ◽  
Controlled Conditions ◽  
Resistant Population ◽  
Rigid Ryegrass

The effect of the organophosphate insecticide malathion on the response of resistant rigid ryegrass population SLR 31 to the herbicides trifluralin, pendimethalin, clomazone, and triallate was investigated. The insecticide and herbicides were soil-applied prior to emergence of plants grown under controlled conditions. In the absence of malathion, the resistant population exhibited significant resistance to the four herbicides compared with a susceptible population. Levels of resistance, as determined by comparison of herbicide rates required to inhibit growth by 50%, were 35, 11, 2.4, and 2.4 for pendimethalin, trifluralin, triallate, and clomazone, respectively. Malathion had a synergistic effect on pendimethalin in the resistant population but not in the susceptible population. Malathion had no synergistic effect on trifluralin, triallate and clomazone. Resistance to triallate and clomazone was found despite the fact that the resistant population had never before been selected with these herbicides. This resistance, selected by other herbicides, further indicates that the use of alternative herbicides to control multiple resistant weeds is unlikely to be a successful resistance management approach.

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