scholarly journals Scaffolding proteins guide the evolution of algal light harvesting antennas

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Harry W. Rathbone ◽  
Katharine A. Michie ◽  
Michael J. Landsberg ◽  
Beverley R. Green ◽  
Paul M. G. Curmi

AbstractPhotosynthetic organisms have developed diverse antennas composed of chromophorylated proteins to increase photon capture. Cryptophyte algae acquired their photosynthetic organelles (plastids) from a red alga by secondary endosymbiosis. Cryptophytes lost the primary red algal antenna, the red algal phycobilisome, replacing it with a unique antenna composed of αβ protomers, where the β subunit originates from the red algal phycobilisome. The origin of the cryptophyte antenna, particularly the unique α subunit, is unknown. Here we show that the cryptophyte antenna evolved from a complex between a red algal scaffolding protein and phycoerythrin β. Published cryo-EM maps for two red algal phycobilisomes contain clusters of unmodelled density homologous to the cryptophyte-αβ protomer. We modelled these densities, identifying a new family of scaffolding proteins related to red algal phycobilisome linker proteins that possess multiple copies of a cryptophyte-α-like domain. These domains bind to, and stabilise, a conserved hydrophobic surface on phycoerythrin β, which is the same binding site for its primary partner in the red algal phycobilisome, phycoerythrin α. We propose that after endosymbiosis these scaffolding proteins outcompeted the primary binding partner of phycoerythrin β, resulting in the demise of the red algal phycobilisome and emergence of the cryptophyte antenna.

Biomedicines ◽  
2021 ◽  
Vol 9 (2) ◽  
pp. 117
Author(s):  
Anna Tamanini ◽  
Enrica Fabbri ◽  
Tiziana Jakova ◽  
Jessica Gasparello ◽  
Alex Manicardi ◽  
...  

(1) Background: Up-regulation of the Cystic Fibrosis Transmembrane Conductance Regulator gene (CFTR) might be of great relevance for the development of therapeutic protocols for cystic fibrosis (CF). MicroRNAs are deeply involved in the regulation of CFTR and scaffolding proteins (such as NHERF1, NHERF2 and Ezrin). (2) Methods: Content of miRNAs and mRNAs was analyzed by RT-qPCR, while the CFTR and NHERF1 production was analyzed by Western blotting. (3) Results: The results here described show that the CFTR scaffolding protein NHERF1 can be up-regulated in bronchial epithelial Calu-3 cells by a peptide-nucleic acid (PNA) targeting miR-335-5p, predicted to bind to the 3′-UTR sequence of the NHERF1 mRNA. Treatment of Calu-3 cells with this PNA (R8-PNA-a335) causes also up-regulation of CFTR. (4) Conclusions: We propose miR-335-5p targeting as a strategy to increase CFTR. While the efficiency of PNA-based targeting of miR-335-5p should be verified as a therapeutic strategy in CF caused by stop-codon mutation of the CFTR gene, this approach might give appreciable results in CF cells carrying other mutations impairing the processing or stability of CFTR protein, supporting its application in personalized therapy for precision medicine.


1978 ◽  
Vol 26 (4) ◽  
pp. 515 ◽  
Author(s):  
GT Kraft

The endemic Australian red algal families Mychodeaceae Kylin and Mychodeophyllaceae fam. nov. are described and characterized in vegetative and reproductive detail. The Mychodeaceae is composed of the single genus Mychodea and 11 species which are distinguished on habit features and vegetative differences. Plants are uniaxial with a distinctive pattern of axial development, monoecious, zonately tetrasporangiate, procarpic and polycarpogonial. Supporting cells of carpogonial branches function as auxiliary cells which remain unfused to adjacent cells after diploidization and emit numerous gonimoblast filaments towards the centre of the thallus. The gonimoblasts become secondarily pitconnected to gametophytic cells which they lie next to and eventually appear to break up into isolated groups of cells which both initiate additional carposporangial precursors and enlarge directly into carposporangia themselves. Carposporangial initials can form secondary pit-connections to any type of adjacent cell, which results in irregularly branched carposporangial clusters whose cells are frequently attached to sterile gametophytic cells within and around the periphery of the cystocarp. Mature cystocarps consist of a non-ostiolate pericarp and pockets of carposporangia isolated between persistent sterile cells throughout the fertile region. The genera Neurophyllis Zanardini and Ectoclinium J. Agardh are placed in synonymy with Mychodea, and all extra-Australian records of the group are discounted or questioned. A new family, the Mychodeophyllaceae, is created for Mychodeophyllum papillitectum gen. et sp. nov. from Western Australia. Mychodeophyllum shares spermatangial and tetrasporangial features with Mychodea, as well as sexual elements such as polycarpogonial procarps, lack of a fusion cell, and multiple, inwardly growing gonimoblast initials. Gonimoblast filaments develop quite differently from Mychodea, however, and carposporangia form radiating chains around the periphery of a central placenta composed of mixed and secondarily connected gonimoblast and gametophytic filaments. Plants of the genus are also apparently rnultiaxial. The Mychodeaceae and Mychodeophyllaceae appear to be highly specialized in vegetative and carposporophyte structure, and have given rise to no known higher lines of development. It is speculated that both families may represent offshoots from ancestors at a level of carposporophyte complexit) represented by present-day Rhabdoniaceae, Solieriaceae and Rhodophyllidaceae.


2010 ◽  
Vol 108 (1) ◽  
pp. 379-384 ◽  
Author(s):  
Shiva K. Tyagarajan ◽  
Himanish Ghosh ◽  
Gonzalo E. Yévenes ◽  
Irina Nikonenko ◽  
Claire Ebeling ◽  
...  

Postsynaptic scaffolding proteins ensure efficient neurotransmission by anchoring receptors and signaling molecules in synapse-specific subcellular domains. In turn, posttranslational modifications of scaffolding proteins contribute to synaptic plasticity by remodeling the postsynaptic apparatus. Though these mechanisms are operant in glutamatergic synapses, little is known about regulation of GABAergic synapses, which mediate inhibitory transmission in the CNS. Here, we focused on gephyrin, the main scaffolding protein of GABAergic synapses. We identify a unique phosphorylation site in gephyrin, Ser270, targeted by glycogen synthase kinase 3β (GSK3β) to modulate GABAergic transmission. Abolishing Ser270 phosphorylation increased the density of gephyrin clusters and the frequency of miniature GABAergic postsynaptic currents in cultured hippocampal neurons. Enhanced, phosphorylation-dependent gephyrin clustering was also induced in vitro and in vivo with lithium chloride. Lithium is a GSK3β inhibitor used therapeutically as mood-stabilizing drug, which underscores the relevance of this posttranslational modification for synaptic plasticity. Conversely, we show that gephyrin availability for postsynaptic clustering is limited by Ca2+-dependent gephyrin cleavage by the cysteine protease calpain-1. Together, these findings identify gephyrin as synaptogenic molecule regulating GABAergic synaptic plasticity, likely contributing to the therapeutic action of lithium.


2020 ◽  
Author(s):  
Abagael M. Lasseigne ◽  
Fabio A. Echeverry ◽  
Sundas Ijaz ◽  
Jennifer Carlisle Michel ◽  
E. Anne Martin ◽  
...  

SUMMARYElectrical synaptic transmission relies on neuronal gap junctions containing channels constructed by Connexins. While at chemical synapses neurotransmitter-gated ion channels are critically supported by scaffolding proteins, it is unknown if channels at electrical synapses require similar scaffold support. Here we investigated the functional relationship between neuronal Connexins and Zonula Occludens 1 (ZO1), an intracellular scaffolding protein localized to electrical synapses. Using model electrical synapses in zebrafish Mauthner cells, we demonstrated that ZO1 is required for robust synaptic Connexin localization, but Connexins are dispensable for ZO1 localization. Disrupting this hierarchical ZO1/Connexin relationship abolishes electrical transmission and disrupts Mauthner-cell-initiated escape responses. We found that ZO1 is asymmetrically localized exclusively postsynaptically at neuronal contacts where it functions to assemble intercellular channels. Thus, forming functional neuronal gap junctions requires a postsynaptic scaffolding protein. The critical function of a scaffolding molecule reveals an unanticipated complexity of molecular and functional organization at electrical synapses.


Genetics ◽  
1995 ◽  
Vol 140 (3) ◽  
pp. 945-956
Author(s):  
F Ness ◽  
M Aigle

Abstract We have isolated a new yeast gene called RTM1 whose overexpression confers resistance to the toxicity of molasses. The RTM1 gene encodes a hydrophobic 34-kD protein that contains seven potential transmembrane-spanning segments. Analysis of a series of industrial strains shows that the sequence is present in multiple copies and in variable locations in the genome. RTM loci are always physically associated with SUC telomeric loci. The SUC-RTM sequences are located between X and Y' subtelomeric sequences at chromosome ends. Surprisingly RTM sequences are not detected in the laboratory strain X2180. The lack of this sequence is associated with the absence of any SUC telomeric gene previously described. This observation raises the question of the origin of this nonessential gene. The particular subtelomeric position might explain the SUC-RTM sequence amplification observed in the genome of yeasts used in industrial biomass or ethanol production with molasses as substrate. This SUC-RTM sequence dispersion seems to be a good example of genomic rearrangement playing a role in evolution and environmental adaptation in these industrial yeasts.


Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 1895-1895
Author(s):  
Zhenyun Yang ◽  
Sarah Sitarski ◽  
Tirajeh Saadatzadeh ◽  
Fuqin Yin ◽  
Rebecca J. Chan

Abstract Abstract 1895 Poster Board I-918 Juvenile myelomoncytic leukemia (JMML) is a lethal childhood disease characterized by the in vitro phenotype of hematopoitic progenitor hypersensitivity to granulocyte-macrophage-colony-stimulating factor (GM-CSF). At the molecular level, Ras hyperactivation is implicated based on the majority of JMML patients bearing either loss-of-function NF1 mutations or gain-of-function RAS or PTPN11 mutations. We demonstrated previously that the Shp2 gain-of-function mutants Shp2E76K and Shp2D61Y induce constitutively elevated and sustained activation of Erk. Signal transduction among Raf1/MEK/Erk kinases is mediated through direct phosphorylation, but scaffolding proteins also play an important role in regulating the location, strength, and duration of Raf1/MEK/Erk signaling. One of the best-defined scaffolding proteins that positively facilitates the Raf1/MEK/Erk cascade is Kinase Suppressor of Ras (Ksr). In its inactivated state, Ksr is phosphorylated and constitutively associated with MEK. In response to growth factor stimulation or Ras activation, Ksr is dephosphorylated (serine 392), translocates to cell membrane, recruits Raf1 and Erk, and, thus, promotes Erk activation. We hypothesized that Ksr contributes to the hyperproliferation and GM-CSF hypersensitivity of mutant Shp2-expressing cells. Upon examination of phosphorylated Ksr levels, we observed lower GM-CSF-stimulated phospho- Ksr levels in the Shp2D61Y- and Shp2E76K-expressing macrophage progenitors compared to cells expressing empty vector or WT Shp2. Consistently, in co-immunoprecipitation assays, we found that upon GM-CSF stimulation, macrophage progenitors expressing Shp2D61Y or Shp2E76K demonstrated an increased physical association between phospho-Erk and Ksr, suggesting that Ksr promotes enhanced Erk activation in mutant Shp2-expressing cells and may contribute functionally to GM-CSF hypersensitivity of mutant Shp2-expressing cells. To examine this hypothesis, we subjected retrovirally transduced WT and Ksr1-/- bone marrow low density mononuclear cells (LDMNCs) to 3H-thymidine incorporation assays and found that GM-CSF-stimulated proliferation of Ksr1-/- cells expressing Shp2E76K was significantly reduced, but not entirely normalized to the level of WT Shp2-expressing cells. In contrast, the proliferation of Ksr1-/- cells expressing Shp2D61Y was unchanged compared to WT cells expressing Shp2D61Y. To examine the effect of genetic disruption of Ksr1 on GM-CSF-stimulated activation of Erk and Akt, western blot analysis was performed using retrovirally transduced WT and Ksr1-/- bone marrow LDMNCs, as described above. Activation of phospho-Erk was similarly reduced in both Shp2E76K- and Shp2D61Y-expressing cells upon genetic disruption of Ksr1 both at baseline and in response to GM-CSF. However, in contrast, Akt activation was increased, rather than decreased, in both Ksr1-/- Shp2E76K- and Shp2D61Y-expressing cells, suggesting that a compensatory mechanism in the absence of Ksr leads to enhanced signaling through the phospho-inositol-3-kinase (PI3K) pathway in mutant Shp2-expressing cells. Taken together, these findings suggest that the E76K mutant is dependent on Ksr-mediated Erk activation for GM-CSF-stimulated hyperactivation and that the compensatory upregulation of Akt activation in the absence of Ksr may contribute to the incomplete correction of GM-CSF hypersensitivity. Regarding the D61Y mutant, although Erk activation is reduced in the absence of Ksr, the lack of GM-CSF hypersensitivity correction suggests that the Shp2D61Y-expressing cells are more sensitive to the compensatory upregulation of Akt activation. Disclosures: No relevant conflicts of interest to declare.


2013 ◽  
Vol 109 (8) ◽  
pp. 2044-2055 ◽  
Author(s):  
Brian Chu ◽  
Che-Hsiung Liu ◽  
Sukanya Sengupta ◽  
Amit Gupta ◽  
Padinjat Raghu ◽  
...  

Absolute visual thresholds are limited by “dark noise,” which in Drosophila photoreceptors is dominated by brief (∼10 ms), small (∼2 pA) inward current events, occurring at ∼2/s, believed to reflect spontaneous G protein activations. These dark events were increased in rate and amplitude by a point mutation in myosin III (NINAC), which disrupts its interaction with the scaffolding protein, INAD. This phenotype mimics that previously described in null mutants of ninaC (no inactivation no afterpotential; encoding myosin III) and an associated protein, retinophilin ( rtp). Dark noise was similarly increased in heterozygote mutants of diacylglycerol kinase ( rdgA/+). Dark noise in ninaC, rtp, and rdgA/+ mutants was greatly suppressed by mutations of the Gq α-subunit ( Gα q) and the major light-sensitive channel ( trp) but not rhodopsin. ninaC, rtp, and rdgA/+ mutations also all facilitated residual light responses in Gα q and PLC hypomorphs. Raising cytosolic Ca2+ in the submicromolar range increased dark noise, facilitated activation of transient receptor potential (TRP) channels by exogenous agonist, and again facilitated light responses in Gα q hypomorphs. Our results indicate that RTP, NINAC, INAD, and diacylglycerol kinase, together with a Ca2+-dependent threshold, share common roles in suppressing dark noise and regulating quantum bump generation; consequently, most spontaneous G protein activations fail to generate dark events under normal conditions. By contrast, quantum bump generation is reliable but delayed until sufficient G proteins and PLC are activated to overcome threshold, thereby ensuring generation of full-size bumps with high quantum efficiency.


2005 ◽  
Vol 25 (12) ◽  
pp. 5119-5133 ◽  
Author(s):  
Ashok Pullikuth ◽  
Evangeline McKinnon ◽  
Hans-Joerg Schaeffer ◽  
Andrew D. Catling

ABSTRACT How the extracellular signal-regulated kinase (ERK) cascade regulates diverse cellular functions, including cell proliferation, survival, and motility, in a context-dependent manner remains poorly understood. Compelling evidence indicates that scaffolding molecules function in yeast to channel specific signals through common components to appropriate targets. Although a number of putative ERK scaffolding proteins have been identified in mammalian systems, none has been linked to a specific biological response. Here we show that the putative scaffold protein MEK partner 1 (MP1) and its partner p14 regulate PAK1-dependent ERK activation during adhesion and cell spreading but are not required for ERK activation by platelet-derived growth factor. MP1 associates with active but not inactive PAK1 and controls PAK1 phosphorylation of MEK1. Our data further show that MP1, p14, and MEK1 serve to inhibit Rho/Rho kinase functions necessary for the turnover of adhesion structures and cell spreading and reveal a signal-channeling function for a MEK1/ERK scaffold in orchestrating cytoskeletal rearrangements important for cell motility.


2021 ◽  
Author(s):  
Euki Yazaki ◽  
Akinori Yabuki ◽  
Ayaka Imaizumi ◽  
Keitaro Kume ◽  
Tetsuo Hashimoto ◽  
...  

AbstractAs-yet-undescribed branches in the tree of eukaryotes are potentially represented by some of “orphan” protists (unicellular micro-eukaryotes), of which phylogenetic affiliations have not been clarified in previous studies. By clarifying the phylogenetic positions of orphan protists, we may fill the previous gaps in the diversity of eukaryotes and further uncover the novel affiliation between two (or more) major lineages in eukaryotes. Microheliella maris was originally described as a member of the phylum Heliozoa, but a pioneering large-scale phylogenetic analysis failed to place this organism within the previously described species/lineages with confidence. In this study, we analyzed a 319-gene alignment and demonstrated that M. maris represents a basal lineage of one of the major eukaryotic lineages, Cryptista. We here propose a new clade name “Pancryptista” for Cryptista plus M. maris. The 319-gene analyses also indicated that M. maris is a key taxon to recover the monophyly of Archaeplastida and the sister relationship between Archaeplastida and Pancryptista, which is collectively called as “CAM clade” here. Significantly, Cryptophyceae tend to be attracted to Rhodophyta depending on the taxon sampling (ex., in the absence of M. maris and Rhodelphidia) and the particular phylogenetic “signal” most likely hindered the stable recovery of the monophyly of Archaeplastida in previous studies. We hypothesize that many cryptophycean genes (including those in the 319-gene alignment) recombined partially with the homologous genes transferred from the red algal endosymbiont during secondary endosymbiosis and bear a faint phylogenetic affinity to the rhodophytan genes.


PLoS Genetics ◽  
2021 ◽  
Vol 17 (7) ◽  
pp. e1009663
Author(s):  
Maria Velkova ◽  
Nicola Silva ◽  
Maria Rosaria Dello Stritto ◽  
Alexander Schleiffer ◽  
Pierre Barraud ◽  
...  

Homologous recombination is a high-fidelity repair pathway for DNA double-strand breaks employed during both mitotic and meiotic cell divisions. Such repair can lead to genetic exchange, originating from crossover (CO) generation. In mitosis, COs are suppressed to prevent sister chromatid exchange. Here, the BTR complex, consisting of the Bloom helicase (HIM-6 in worms), topoisomerase 3 (TOP-3), and the RMI1 (RMH-1 and RMH-2) and RMI2 scaffolding proteins, is essential for dismantling joint DNA molecules to form non-crossovers (NCOs) via decatenation. In contrast, in meiosis COs are essential for accurate chromosome segregation and the BTR complex plays distinct roles in CO and NCO generation at different steps in meiotic recombination. RMI2 stabilizes the RMI1 scaffolding protein, and lack of RMI2 in mitosis leads to elevated sister chromatid exchange, as observed upon RMI1 knockdown. However, much less is known about the involvement of RMI2 in meiotic recombination. So far, RMI2 homologs have been found in vertebrates and plants, but not in lower organisms such as Drosophila, yeast, or worms. We report the identification of the Caenorhabditis elegans functional homolog of RMI2, which we named RMIF-2. The protein shows a dynamic localization pattern to recombination foci during meiotic prophase I and concentration into recombination foci is mutually dependent on other BTR complex proteins. Comparative analysis of the rmif-2 and rmh-1 phenotypes revealed numerous commonalities, including in regulating CO formation and directing COs toward chromosome arms. Surprisingly, the prevalence of heterologous recombination was several fold lower in the rmif-2 mutant, suggesting that RMIF-2 may be dispensable or less strictly required for some BTR complex-mediated activities during meiosis.


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