Molecular and morphological variation in the Senna artemisioides complex

2000 ◽  
Vol 48 (5) ◽  
pp. 569 ◽  
Author(s):  
J. E. Holman ◽  
J. Playford
Keyword(s):  
Genetic Variation ◽  
National Park ◽  
Species Complex ◽  
Genetic Distances ◽  
Genetic Differences ◽  
A Value ◽  
Discontinuous Variation ◽  
Integrative Study ◽  
Systematic Relationships ◽  
Foliar Morphology

The Senna artemisioides species complex is characterised by extremely variable foliar morphology. This paper presents the results of an integrative study on reproductive biology, morphology and genetic variation to explore the evolutionary and systematic relationships within this species complex at Idalia National Park in central Queensland. Senna artemisioides showed discontinuous variation at both genetic and phenotypic level. At three sites, foliar morphology was discontinuous, being represented as discrete clusters. Analysis of isozyme variation indicated that many of the discrete morphological groups are distinguished by fixed genetic differences. Morphotypes were also characterised by widespread monomorphism. Most of the genetic variation was between morphotypes rather than within morphotypes. These fixed genetic differences indicate a lack of gene flow between morphotypes and therefore an absence of hybridisation. The two most distinct morphological groups (pyllodinous, pinnate) had high genetic distances of 0.5, a value beyond the usual distance between congeneric species. Forty-two percent of pairwise comparisons between other morphotypes yielded genetic distance values that were relatively high (0.21–0.42). Some phenotypically distinct morphotypes, however, showed little or no isozyme divergence. The combined evidence suggests that genetically distinct morphotypes are independent lineages originating from an ancestral sexual reproductive event that is perpetuated by apomictic reproduction.

Enzyme variation in natural populations of Sitka spruce (Piceasitchensis). 1. Genetic variation patterns among trees from 10 IUFRO provenances

1980 ◽  
Vol 10 (3) ◽  
pp. 415-422 ◽  
Author(s):  
Francis C. Yeh ◽  
Yousry A. El-Kassaby
Keyword(s):  
Genetic Variation ◽  
Gene Diversity ◽  
Natural Populations ◽  
Sitka Spruce ◽  
Genetic Distances ◽  
Pairwise Comparisons ◽  
A Value ◽  
Variation Patterns ◽  
Average Proportion ◽  
Geographic Sources

Genetic variation at 24 enzyme loci was studied for 10 IUFRO populations of Sitka spruce (Piceasitchensis (Bong.) Carr.). The average proportion of polymorphic loci per population was 0.51 ± 0.02 and the average proportion of heterozygous loci per individual was 0.15 ± 0.03. The following generalizations were advanced: (1) the amount of genetic polymorphism varied considerably from locus to locus; (2) many populations were similar in the amount and pattern of genetic variation for most loci; (3) but some loci had large differences among populations.Eight percent of the gene diversity was attributed to interpopulation differentiation; 92% of the total gene diversity resided within populations. Pairwise comparisons of genetic distances averaged 0.014, a value which reflected very little differentiation between geographic sources.

Genetic variation within and relatedness among wood and plains bison populations

Genome ◽  
1999 ◽  
Vol 42 (3) ◽  
pp. 483-496 ◽  
Author(s):  
G A Wilson ◽  
C Strobeck
Keyword(s):  
Genetic Variation ◽  
National Park ◽  
Genetic Relatedness ◽  
Nuclear Material ◽  
Genetic Distances ◽  
Bison Bison ◽  
Dna Microsatellites ◽  
Island State ◽  
Wood Bison ◽  
Wood Buffalo National Park

There are two recognized subspecies of bison, wood (Bison bison athabascae) and plains (Bison bison bison) bison. The establishment of most bison populations from a small number of individuals has raised concerns about their genetic variation. To this end, 11 bison populations were surveyed with 11 microsatellite loci in order to calculate genetic variation and genetic distances. Mean number of alleles ranged between 3.18 at Antelope Island State Park (Utah) and 6.55 at Wood Buffalo National Park (Alberta and Northwest Territories). Mean heterozygosity ranged from 0.295 at Antelope Island State Park to 0.669 at Custer State Park (South Dakota). The amount of genetic variability present in the bison populations as measured by mean number of alleles and overall probability of identity was found to correlate with the number of founders for all sampled populations. The G-test for heterogeneity revealed some evidence for the existence of subpopulations at Wood Buffalo National Park, however very small genetic distances between these subpopulations suggest that nuclear material from the plains bison introduced into Wood Buffalo National Park has diffused throughout the park. Genetic distances between the sampled populations were generally larger between than within the two bison subspecies.Key words: Bison bison bison, Bison bison athabascae, DNA microsatellites, genetic variation, genetic relatedness.

scholarly journals Genetic Variation Among Colletotrichum graminicola Isolates from Four Hosts Using Isozyme Analysis

Plant Disease ◽  
2004 ◽  
Vol 88 (4) ◽  
pp. 402-406 ◽  
Author(s):  
B. J. Horvath ◽  
J. M. Vargas
Keyword(s):  
Genetic Variation ◽  
Genetic Distance ◽  
Geographic Origin ◽  
Creeping Bentgrass ◽  
Genetic Distances ◽  
Colletotrichum Graminicola ◽  
Annual Bluegrass ◽  
Close Relationship ◽  
Host Origin ◽  
Serious Disease

Anthracnose basal rot (ABR) is a serious disease of turfgrasses that is caused by the pathogen Colletotrichum graminicola. The relationships of isolates causing ABR on turfgrasses to those causing disease on important crop hosts (maize, sorghum) remain unresolved. Genetic variation among isolates from annual bluegrass, creeping bentgrass, maize, and sorghum was evaluated based on host origin and geographic origin. Isozymes were used to estimate the genetic variation of the isolates. Five enzyme systems comprising 16 alleles from 5 loci were used. Allele frequencies, genetic distance, and linkage disequilibrium values were calculated for isolates based on both host and geographic origin. Isolates from creeping bentgrass and annual bluegrass were the most closely related based on Nei's genetic distance, while isolates from maize and sorghum were the most distantly related, consistent with their known species-level relationship. Isolates from annual bluegrass and creeping bentgrass had different genetic distances to isolates from both maize and sorghum. Annual bluegrass isolates from different geographic regions had the smallest genetic distance values observed in this study, indicating a very close relationship regardless of geographic origin. Based on these data, it appears that host origin, not geographic origin, plays a more important role in the genetic diversity of these fungi.

scholarly journals Bioacoustic investigations and taxonomic considerations on the Cicadetta montana species complex (Homoptera: Cicadoidea: Tibicinidae)

2004 ◽  
Vol 76 (2) ◽  
pp. 316-324 ◽  
Author(s):  
Matija Gogala ◽  
Tomi Trilar
Keyword(s):  
Cryptic Species ◽  
Species Complex ◽  
Similar Case ◽  
Genetic Differences ◽  
Species Level ◽  
Sister Species ◽  
Type Locality

Recent bioacoustic investigations have shown that Cicadetta montana Scopoli 1772 is a complex of morphologically similar sister species that are best characterized by their song patterns. At the type locality of C. montana, only mountain cicadas with simple, long lasting song phrases were heard, recorded and collected. Therefore, we have good reasons to suggest that this type of song is characteristic for C. montana s. str. Boulard described a song of C. montana from France with phrases composed of a long and a short echeme; this type of song is characteristic for cicadas morphologically corresponding to C. montana var. brevipennis Fieber 1876; we suggest to raise this taxon to species level. On the basis of specific song, Puissant and Boulard described C. cerdaniensis from Pyrénées. A similar case was the discovery and description of C. montana macedonica Schedl 1999 from Macedonia; since these Macedonian cicadas are sympatric with at least two other cryptic species in the C. montana group and molecular investigations showed substantial genetic differences between C. macedonica and C. montana or C. brevipennis, we conclude that this taxon should also be raised to species level. Songs of closely related C. podolica and Korean mountain cicada are presented as well.

scholarly journals ANALISIS KEBERADAAN PAKAN ORANGUTAN DAN INDEKS SHANNON-WIENER PADA AREA REBOISASI ASRI DI KAWASAN TAMAN NASIONAL GUNUNG PALUNG

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Nurul Ihsan Fauzi ◽  
Erina Safitri ◽  
Juliansyah Juliansyah ◽  
Farah Diba
Keyword(s):  
Data Collection ◽  
Forest Restoration ◽  
National Park ◽  
Forest Ecosystems ◽  
Stable Condition ◽  
Wiener Index ◽  
The Past ◽  
Restoration Site ◽  
A Value ◽  
Primary Forests

Gunung Palung National Park had lost 35% of its primary forests over the past 30 years. A forest restoration program is thus vital to restore the damaged forest ecosystems. This study aims to analyze the presence of orangutan food supply and Shannon-Wiener index at Alam Sehat Lestari (ASRI) restoration site in Gunung Palung National Park. The method applies a species data collection of orangutan food (in 91 sample plots) and calculation of Shannon-Wiener index (in six 2009's plots). The result depicted approximately 65 species from 25 families found in ASRI restoration site. Eighty percent of those species indicated orangutan food.  In addition, the restoration site is believed to prevent the orangutan conflict with a human due to food availability in restoration areas for orangutans. Analysis of the Shannon-Wiener index (H') demonstrated a value of H' = 2.789, which indicated that the reforestation forest was in stable condition. The effect of increasing biodiversity as characterized by orangutan nests at restoration sites escalates the presence of wildlife.Keywords: Forest Restoration, Gunung Palung National Park, OrangutanTaman Nasional (TN) Gunung Palung telah kehilangan 35% hutan primer selama 30 tahun terakhir. Program reboisasi diperlukan untuk mengembalikan ekosistem hutan yang telah rusak. Tujuan penelitian ini adalah untuk menganalisis keberadaan pakan orangutan dan indeks Shannon-Wiener di area reboisasi yang dilakukan oleh Yayasan Alam Sehat Lestari (ASRI) di kawasan TN Gunung Palung. Metode yang digunakan adalah monitoring terhadap 91 plot untuk identifikasi pakan orangutan dan 6 plot penanaman tahun 2009 untuk perhitungan indeks Shanon-Wiener. Hasilnya terdapat 65 spesies dari 25 suku yang ditemukan di lokasi reboisasi ASRI. Sebanyak 85% dari spesies tersebut adalah pakan orangutan. Selain itu, keberadaan area reboisasi membantu mencegah konflik ini karena orangutan dapat mencari makanan di area reboisasi. Analisis indeks Shannon-Wiener (H’) didapatkan nilai H’ = 2,789, yang menunjukkan hutan hasil reboisasi berada dalam kondisi menengah atau stabil. Efek peningkatan biodiversitas ditandai dengan sarang-sarang orangutan ditemukan di lokasi reboisasi dan keberadaan satwa liar telah meningkat. Kata kunci: Gunung Palung, Orangutan, Restorasi hutan

scholarly journals Climatic Refugia and Geographical Isolation Contribute to the Speciation and Genetic Divergence in Himalayan-Hengduan Tree Peonies (Paeonia delavayi and Paeonia ludlowii)

2021 ◽  
Vol 11 ◽  
Author(s):  
Yu-Juan Zhao ◽  
Gen-Shen Yin ◽  
Yue-Zhi Pan ◽  
Bo Tian ◽  
Xun Gong
Keyword(s):  
Genetic Variation ◽  
Late Quaternary ◽  
Demographic History ◽  
Nuclear Gene ◽  
Genetic Distances ◽  
Population Divergence ◽  
Widespread Species ◽  
Isolation With Migration ◽  
Isolation By Environment ◽  
Paeonia Delavayi

Himalaya and Hengduan Mountains (HHM) is a biodiversity hotspot, and very rich in endemic species. Previous phylogeographical studies proposed different hypotheses (vicariance and climate-driven speciation) in explaining diversification and the observed pattern of extant biodiversity, but it is likely that taxa are forming in this area in species-specific ways. Here, we reexplored the phylogenetic relationship and tested the corresponding hypotheses within Paeonia subsect. Delavayanae composed of one widespread species (Paeonia delavayi) and the other geographically confined species (Paeonia ludlowii). We gathered genetic variation data at three chloroplast DNA fragments and one nuclear gene from 335 individuals of 34 populations sampled from HHM. We performed a combination of population genetic summary statistics, isolation-with-migration divergence models, isolation by environment, and demographic history analyses. We found evidence for the current taxonomic treatment that P. ludlowii and P. delavayi are two different species with significant genetic differentiation. The significant isolation by environment was revealed within all sampled populations but genetic distances only explained by geographical distances within P. delavayi populations. The results of population divergence models and demographic history analyses indicated a progenitor–derivative relationship and the Late Quaternary divergence without gene flow between them. The coalescence of all sampled cpDNA haplotypes could date to the Late Miocene, and P. delavayi populations probably underwent a severe bottleneck in population size during the last glacial period. Genetic variation in Paeonia subsect. Delavayanae is associated with geographical and environmental distances. These findings point to the importance of geological and climatic changes as causes of the speciation event and lineage diversification within Paeonia subsect. Delavayanae.

scholarly journals Genetic analysis of silver-fir populations in the Beskids

2011 ◽  
Vol 72 (2) ◽  
pp. 115-119 ◽  
Author(s):  
Leon Mejnartowicz
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Analysis ◽  
Abies Alba ◽  
Genetic Distances ◽  
Silver Fir ◽  
Geographical Distance ◽  
Polymorphic Loci ◽  
Expected Heterozygosity ◽  
Rare Alleles

Twenty-eight isozymic loci were studied in the Beskid Mts., in four populations of common silver-fir (<em>Abies alba</em>): one in Beskid Makowski (BM) and three populations in Beskid Sądecki (BS). Their genetic variation and diversity were analyzed, and Nei's genetic distances between the populations were calculated. The results show that the geographical distance between the BM population and the three BS populations is reflected in genetic distances. The BM population is clearly distinct from the others. It has the lowest genetic diversity (<em>I</em> = <em>0.42</em>), percentage of polymorphic loci <em>(%PoL </em>= <em>64.29</em>) and number of rare alleles (<em>NoRa </em>= <em>5</em>). Besides, the BM population has the highest observed heterozygosity (<em>Ho </em>= <em>0.291</em>), which exceeds the expected heterozygosity (<em>He </em>= <em>0.254</em>), estimated on the basis of the Hardy-Weinberg Principle. On the contrary, BS populations are in the state of equilibrium, which is manifested, in similar values of <em>He </em>= <em>0.262 </em>and <em>Ho </em>= <em>0.264</em>.

scholarly journals Analysis of the vitality of the Agathis dammara tree at Situ Gunung Resort, Gunung Gede Pangrango National Park

2021 ◽  
Vol 912 (1) ◽  
pp. 012071
Author(s):  
I R Maulana ◽  
Rahmat Safe’i ◽  
Siti Fauzia Rochmah
Keyword(s):  
Health Status ◽  
National Park ◽  
Health Assessment ◽  
Forest Health ◽  
Crown Condition ◽  
Tree Damage ◽  
Damage Level ◽  
A Value ◽  
Crown Density ◽  
Lower Stem

Abstract Vitality is the vigor value of the trees in responding to environmental conditions. Determined vitality value was by calculating tree damage and crown condition. The Agathis dammara tree is a native Indonesian plant in the Situ Gunung Resort, Gunung Gede Pangrango National Park (TNGGP). This study aims to determine the vitality and value of the health status of Agathis dammara trees at Situ Gunung Resort, TNGGP. The research location is in the utilization zone at the Situ Gunung Resort, TNGGP, covering an area of 700 haBuilt observation plots based on the Forest Health Monitoring (FHM) cluster plot design as many as nine cluster plots. They have calculated tree damage based on the location where found the damage was in the FHM method. Calculated condition canopy based on five parameters visual crown. Assessment of tree health status uses a forest health assessment information system. The results showed that the location where found the most damage was at the root and lower stem (code 2) as many as 67 trees, dominated by liana damage (code 20) as many as 43 trees, with an average damage level of 35%. The live crown ratio 20-35%, crown density 25-50%, foliage transparency 50-70%, crown diameter 2.5-10 m, and dieback 0-5%. The value of the health status of the Agathis dammara tree has a value of 1.69-2.44. Thus, these conditions illustrate that the vitality and value of the health status of Agathis dammara trees at Situ Gunung Resort, TNGGP are in the medium criteria and category.

Taxonomic status of two populations of Bent-toed Geckos of the Cyrtodactylus irregularis complex (Squamata: Gekkonidae) with description of a new species from Nui Chua National Park, southern Vietnam

Zootaxa ◽  
2018 ◽  
Vol 4403 (2) ◽  
pp. 307 ◽  
Author(s):  
OLIVIER S. G. PAUWELS ◽  
ROMAN A. NAZAROV ◽  
VLADIMIR V. BOBROV ◽  
NIKOLAY A. POYARKOV
Keyword(s):  
New Species ◽  
National Park ◽  
Species Complex ◽  
Nature Reserve ◽  
Taxonomic Status ◽  
Southern Vietnam ◽  
Number Of Species ◽  
Two Populations ◽  
A New Species

Based on genetic, morphological and chromatical comparisons we evaluate the taxonomic status of two southern Vietnamese forest-dwelling populations of the Cyrtodactylus irregularis species complex. We confirm the allocation of the population from Binh Chau—Phuoc Buu Nature Reserve (Ba Ria—Vung Tau Province) to C. cattienensis and we describe the population of Nui Chua National Park (Ninh Thuan Province) as Cyrtodactylus sangi sp. nov. This brings to 18 the number of species within the C. irregularis complex and to 41 the number of described Cyrtodactylus species recorded from Vietnam. 

Animals and the prehistoric origins of economic development

2020 ◽  
Author(s):  
Ideen A Riahi
Keyword(s):  
Economic Development ◽  
Genetic Variation ◽  
Adverse Effects ◽  
Genetic Distance ◽  
Genetic Differences ◽  
Macro Level ◽  
Human Genetic Variation ◽  
Comparative Development ◽  
Continental Scale ◽  
European Colonization

Abstract This paper revisits the macro-level relationship between human genetic variation (genetic distance and diversity) and economic development. If other continents were biogeographically more similar to Eurasia, their populations’ capacities to ward off the adverse effects of European colonization would have been much higher and, thus, their economies considerably more prosperous today. At the continental scale, genetic differences between people do not matter for comparative development.

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