scholarly journals Characterization of Deleterious Mutations in Outcrossing Populations

Genetics ◽  
1998 ◽  
Vol 150 (2) ◽  
pp. 945-956 ◽  
Author(s):  
Hong-Wen Deng
Keyword(s):  
Genetic Variation ◽  
Genetic Variance ◽  
Estimation Bias ◽  
Deleterious Mutations ◽  
Environmental Variance ◽  
Higher Power ◽  
Sib Mating ◽  
The Mean ◽  
Simulation Results

Abstract Deng and Lynch recently proposed estimating the rate and effects of deleterious genomic mutations from changes in the mean and genetic variance of fitness upon selfing/outcrossing in outcrossing/highly selfing populations. The utility of our original estimation approach is limited in outcrossing populations, since selfing may not always be feasible. Here we extend the approach to any form of inbreeding in outcrossing populations. By simulations, the statistical properties of the estimation under a common form of inbreeding (sib mating) are investigated under a range of biologically plausible situations. The efficiencies of different degrees of inbreeding and two different experimental designs of estimation are also investigated. We found that estimation using the total genetic variation in the inbred generation is generally more efficient than employing the genetic variation among the mean of inbred families, and that higher degree of inbreeding employed in experiments yields higher power for estimation. The simulation results of the magnitude and direction of estimation bias under variable or epistatic mutation effects may provide a basis for accurate inferences of deleterious mutations. Simulations accounting for environmental variance of fitness suggest that, under full-sib mating, our extension can achieve reasonably well an estimation with sample sizes of only ∼2000-3000.

scholarly journals Evaluation of Genetic behavior of Sunflower (Helianthus annuus L.) As Effect by Planting Dates

2019 ◽  
Vol 9 (1) ◽  
pp. 150-155
Author(s):  
Abdullah F. Serheed ◽  
Haider T. Hussein
Keyword(s):  
Helianthus Annuus ◽  
Correlation Coefficient ◽  
Environmental Conditions ◽  
Genetic Variance ◽  
Planting Dates ◽  
Environmental Variance ◽  
Growing Seasons ◽  
The Mean ◽  
Phenotypic Variations ◽  
Coefficient Stability

Afield experiment was carried out during the spring and autumn seasons of 2016 and 2017 in AL- Musaib city / 40 km north of Babylon Provence. Two hybrids of sunflower( shamus, French hybrid (Euroflor) were used to evaluate the performance of the two cultivars at both growing seasons as well as knowledge of genetic behavior by studying the genetic and phenotypic variations, heritability percent, genetic and phenotypic coefficient, stability and persistence of the two cultivars .The results showed significant differences of the studied traits, as the genetic genotype (Shamus) most of the characteristics, especially in yield for two seasons.The genetic variance was higher than the environmental variance for the two seasons indicating that the two cultivars followed the same behavior. The heritability percent the dominant sense was high for most of the traits. The genetic and phenotypic variations between the mean and the high were different for the two seasons, the correlation coefficient was significant, for both cultivars, indicating the appropriateness of the two genotypes for the country's environmental conditions.

scholarly journals How does parental environment influence the potential for adaptation to global change?

2018 ◽  
Vol 285 (1886) ◽  
pp. 20181374 ◽  
Author(s):  
Evatt Chirgwin ◽  
Dustin J. Marshall ◽  
Carla M. Sgrò ◽  
Keyne Monro
Keyword(s):  
Genetic Variation ◽  
Global Change ◽  
Adaptive Capacity ◽  
Genetic Variance ◽  
Life Stage ◽  
Additive Genetic Variance ◽  
Parental Exposure ◽  
Future Warming ◽  
The Mean ◽  
Negative Impacts

Parental environments are regularly shown to alter the mean fitness of offspring, but their impacts on the genetic variation for fitness, which predicts adaptive capacity and is also measured on offspring, are unclear. Consequently, how parental environments mediate adaptation to environmental stressors, like those accompanying global change, is largely unknown. Here, using an ecologically important marine tubeworm in a quantitative-genetic breeding design, we tested how parental exposure to projected ocean warming alters the mean survival, and genetic variation for survival, of offspring during their most vulnerable life stage under current and projected temperatures. Offspring survival was higher when parent and offspring temperatures matched. Across offspring temperatures, parental exposure to warming altered the distribution of additive genetic variance for survival, making it covary across current and projected temperatures in a way that may aid adaptation to future warming. Parental exposure to warming also amplified nonadditive genetic variance for survival, suggesting that compatibilities between parental genomes may grow increasingly important under future warming. Our study shows that parental environments potentially have broader-ranging effects on adaptive capacity than currently appreciated, not only mitigating the negative impacts of global change but also reshaping the raw fuel for evolutionary responses to it.

scholarly journals Diversity of Fraxinus ornus from Serbia and Montenegro as revealed by RAPDs

Genetika ◽  
2013 ◽  
Vol 45 (1) ◽  
pp. 51-62
Author(s):  
Srdjan Bojovic ◽  
Philippe Heizmann ◽  
Dragana Drazic ◽  
Dragan Kovacevic ◽  
Petar Marin ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Rapd Markers ◽  
Genetic Variance ◽  
Gene Diversity ◽  
Molecular Genetic ◽  
Mantel Test ◽  
Distance Matrice ◽  
Serbia And Montenegro ◽  
Outcrossing Species ◽  
The Mean

PCR-RAPD markers revealed individual variation in F. ornus. A total of 122 fragments were amplified using 7 primers and of these 97 fragments were polymorphic. The percentage of polymorphic loci was between 53.3% and 74.6% with an average of 63.1%. The mean gene diversity for all populations was 0.30 and the mean Shannon?s index was 0.44. Of the total genetic variation 87% was intra-population whilst 13% was inter-population. The Mantel test revealed significant correlation between genetic and geographical distance matrice. Results herein represent the first use of molecular genetic (DNA) markers to characterize genetic variation in F. ornus populations. The partition of total genetic variance indicates a relatively restricted population differentiation as expected in outcrossing species. Present and future information on genetic structure and variability in F. ornus needs to be incorporated into strategies for the preservation of genetic resources of tree species.

scholarly journals Genetic analysis of environmental variation

2010 ◽  
Vol 92 (5-6) ◽  
pp. 381-395 ◽  
Author(s):  
WILLIAM G. HILL ◽  
HAN A. MULDER
Keyword(s):  
Genetic Variation ◽  
Genetic Control ◽  
Genetic Variance ◽  
Environmental Variation ◽  
Alternative Methods ◽  
Trait Variation ◽  
Environmental Variance ◽  
Breeding Programmes ◽  
Genetic Coefficient Of Variation ◽  
Genetic Coefficient

SummaryEnvironmental variation (VE) in a quantitative trait – variation in phenotype that cannot be explained by genetic variation or identifiable genetic differences – can be regarded as being under some degree of genetic control. Such variation may be either between repeated expressions of the same trait within individuals (e.g. for bilateral traits), in the phenotype of different individuals, where variation within families may differ, or in both components. We consider alternative models for defining the distribution of phenotypes to include a component due to heterogeneity ofVE. We review evidence for the presence of genetic variation inVEand estimates of its magnitude. Typically the heritability ofVEis under 10%, but its genetic coefficient of variation is typically 20% or more. We consider experimental designs appropriate for estimating genetic variance inVEand review alternative methods of estimation. We consider the effects of stabilizing and directional selection onVEand review both the forces that might be maintaining levels ofVEand heritability found in populations. We also evaluate the opportunities for reducingVEin breeding programmes. Although empirical and theoretical studies have increased our understanding of genetic control of environmental variance, many issues remain unresolved.

scholarly journals Estimation of Deleterious-Mutation Parameters in Natural Populations

Genetics ◽  
1996 ◽  
Vol 144 (1) ◽  
pp. 349-360 ◽  
Author(s):  
Hong-Wen Deng ◽  
Michael Lynch
Keyword(s):  
Genetic Variance ◽  
Deleterious Mutation ◽  
Natural Populations ◽  
Breeding Systems ◽  
Deleterious Mutations ◽  
Empirical Estimates ◽  
Mean Fitness ◽  
The Mean ◽  
New Mutations

Abstract The rate and average effects of spontaneous deleterious mutations are important determinants of the evolution of breeding systems and of the vulnerability of small populations to extinction. Nevertheless, few attempts have been made to estimate the properties of such mutations, and those studies that have been performed have been extremely labor intensive, relying on long-term, laboratory mutation-accumulation experiments. We present an alternative to the latter approach. For populations in which the genetic variance for fitness is a consequence of selection-mutation balance, the mean fitness and genetic variance of fitness in outbred and inbred generations can be expressed as simple functions of the genomic mutation rate, average homozygous effect and average dominance coefficient of new mutations. Using empirical estimates for the mean and genetic variance of fitness, these expressions can then be solved to obtain joint estimates of the deleterious-mutation parameters. We employ computer simulations to evaluate the degree of bias of the estimators and present some general recommendations on the application of the technique. Our procedures provide some hope for obtaining estimates of the properties of deleterious mutations from a wide phylogenetic range of species as well as a mechanism for testing the validity of alternative models for the maintenance of genetic variance for fitness.

Genetic variation of horse chestnut and red horse chestnut and trees susceptibility to Erysiphe flexuosa and Cameraria ohridella

Biologia ◽  
2013 ◽  
Vol 68 (5) ◽  
Author(s):  
Lidia Irzykowska ◽  
Maria Werner ◽  
Jan Bocianowski ◽  
Zbigniew Karolewski ◽  
Dorota Frużyńska-Jóźwiak
Keyword(s):  
Genetic Variation ◽  
Rapd Markers ◽  
Genetic Variance ◽  
Mean Value ◽  
Leaf Damage ◽  
Similar Degree ◽  
Horse Chestnut ◽  
Species Variation ◽  
Medium Level ◽  
The Mean

AbstractTrees of Aesculus sp. are often present in European landscapes. Common horse chestnut and red horse chestnut are seriously damaged by the fungus Erysiphe flexuosa as well as the pest Cameraria ohridella. Both pathogen and pest have spread throughout Europe. A genetic background of trees resistance still remains unknown. The present study was undertaken to estimate genetic variation of A. hippocastanum and A.×carnea grown in urban greens and their susceptibility to powdery mildew and horse chestnut leafminer. According to obtained results both species were infected by E. flexuosa in a similar degree but there were significant differences in susceptibility of particular trees (ANOVA). C. ohridella damaged only A. hippocastanum. The correlation between age of trees and degree of infestation by pathogen and pest was not observed. The significant genetic variability between two Aesculus species was revealed by the analysis of molecular variance (AMOVA) where both the intra- and the inter-species variation were found to be significant. It was shown that 73.0% of the genetic variance was contributed by the differentiation between A. hippocastanum and A.×carnea, whereas 27.0% was partitioned within species. The medium level of genetic diversity of Aesculus spp. was determined using SRAP and RAPD analyses. The mean value of genetic similarity was equal to 0.55 for common horse chestnut and 0.98 for red horse chestnut. Among 40 polymorphic SRAP and RAPD markers 17 were associated with degree of leaf damage caused by C. ohridella.

scholarly journals Pleiotropic Model of Maintenance of Quantitative Genetic Variation at Mutation-Selection Balance

Genetics ◽  
2002 ◽  
Vol 161 (1) ◽  
pp. 419-433 ◽  
Author(s):  
Xu-Sheng Zhang ◽  
Jinliang Wang ◽  
William G Hill
Keyword(s):  
Genetic Variation ◽  
Genetic Variance ◽  
Large Population ◽  
Stabilizing Selection ◽  
Fitness Effect ◽  
Environmental Variance ◽  
Quantitative Genetic ◽  
Phenotypic Standard Deviation ◽  
Bivariate Gamma Distribution ◽  
Mutational Variance

AbstractA pleiotropic model of maintenance of quantitative genetic variation at mutation-selection balance is investigated. Mutations have effects on a metric trait and deleterious effects on fitness, for which a bivariate gamma distribution is assumed. Equations for calculating the strength of apparent stabilizing selection (Vs) and the genetic variance maintained in segregating populations (VG) were derived. A large population can hold a high genetic variance but the apparent stabilizing selection may or may not be relatively strong, depending on other properties such as the distribution of mutation effects. If the distribution of mutation effects on fitness is continuous such that there are few nearly neutral mutants, or a minimum fitness effect is assumed if most mutations are nearly neutral, VG increases to an asymptote as the population size increases. Both VG and Vs are strongly affected by the shape of the distribution of mutation effects. Compared with mutants of equal effect, allowing their effects on fitness to vary across loci can produce a much higher VG but also a high Vs (Vs in phenotypic standard deviation units, which is always larger than the ratio VP/Vm), implying weak apparent stabilizing selection. If the mutational variance Vm is ∼10-3  Ve (Ve, environmental variance), the model can explain typical values of heritability and also apparent stabilizing selection, provided the latter is quite weak as suggested by a recent review.

Caracterização da Peneira Média em Clones de Coffea canephora

REVISTA FIMCA ◽  
2018 ◽  
Vol 5 (2) ◽  
pp. 28-31
Author(s):  
Darlan Darlan Sanches Barbosa Alves ◽  
Victor Mouzinho Spinelli ◽  
Marcos Santana Moraes ◽  
Carolina Augusto De Souza ◽  
Rodrigo da Silva Ribeiro ◽  
...  
Keyword(s):  
Genetic Improvement ◽  
Block Design ◽  
Coffea Canephora ◽  
Coffee Production ◽  
Randomized Block Design ◽  
Significant Difference ◽  
The Mean ◽  
Four Blocks ◽  
Selection Of

Introdução: O estado de Rondônia se destaca como tradicional produtor de café, sendo o segundo maior produtor brasileiro de C. canephora. No melhoramento genético de C. canephora, a seleção de plantas de elevada peneira média está associada à bebida de qualidade superior. Objetivos: O objetivo desse estudo foi avaliar a variabilidade genética de clones de C. canephora para o tamanho dos grãos, mensurado a partir da avaliação da peneira média (PM). Materiais e Métodos: Para isso, foi conduzido ao longo de dois anos agrícolas experimento no campo experimental da Embrapa no município de Ouro Preto do Oeste-RO, para a avaliação da peneira média de 130 genótipos (clones) com características das variedades botânicas Conilon, Robusta e híbridos intervarietais. O delineamento experimental utilizado foi de blocos ao acaso, com quatro repetições de quatro plantas por parcela. Resultados: Não houve resultados significativos para a interação clones X anos, indicando uma maior consistência no comportamento das plantas ao longo do tempo. Porém foram observadas diferenças significativas para o tamanho dos grãos entre os genótipos avaliados, possibilitando selecionar genótipos superiores. Conclusão: Os genótipos agruparam-se em cinco classes de acordo com o teste de média, subsidiando a caracterização de um gradiente de variabilidade da característica avaliada ABSTRACTIntroduction: Coffea canephora accounts for approximately 35% of the world's coffee production. The state of Rondônia stands out as a traditional coffee producer, being the second largest Brazilian producer of C. canephora. In the classical genetic improvement of C. anephora, the selection of plants of high average sieve is associated with a drink of superior quality. Objectives: The objective of this udy was to evaluate the genetic variability of Coffea canephora clones for the agronomic medium sieve (PM). Materials and Methods: The experiment was conducted in the experimental field of Embrapa, municipality of OuroPreto do Oeste-RO, located at coordinates 10º44'53 "S and 62º12'57". One hundred thirty genotypes (clones) of botanical characteristics Conilon, Robusta and intervarietal hybrids were evaluated in the agricultural years 2013-2014 and 2014-2015. The experimental design was a randomized block design with four blocks and four plants per plot, spacing 3.5 x 1.5 meters between plants. Results: Significant difference was found for the grain size. According to the F test, at 5% probability, the genotypes were grouped into five classes according to the mean test. Conclusion: The results obtained subsidized the characterization of a variability gradient of the evaluated trait.

The Age of Nonsynonymous and Synonymous Mutations in Animal mtDNA and Implications for the Mildly Deleterious Theory

Genetics ◽  
1999 ◽  
Vol 153 (1) ◽  
pp. 497-506 ◽  
Author(s):  
Rasmus Nielsen ◽  
Daniel M Weinreich
Keyword(s):  
Dna Sequences ◽  
Purifying Selection ◽  
Data Sets ◽  
Deleterious Mutations ◽  
Synonymous Mutations ◽  
Weak Evidence ◽  
Mitochondrial Data ◽  
The Mean ◽  
Excess Number ◽  
Neutral Mutations

Abstract McDonald/Kreitman tests performed on animal mtDNA consistently reveal significant deviations from strict neutrality in the direction of an excess number of polymorphic nonsynonymous sites, which is consistent with purifying selection acting on nonsynonymous sites. We show that under models of recurrent neutral and deleterious mutations, the mean age of segregating neutral mutations is greater than the mean age of segregating selected mutations, even in the absence of recombination. We develop a test of the hypothesis that the mean age of segregating synonymous mutations equals the mean age of segregating nonsynonymous mutations in a sample of DNA sequences. The power of this age-of-mutation test and the power of the McDonald/Kreitman test are explored by computer simulations. We apply the new test to 25 previously published mitochondrial data sets and find weak evidence for selection against nonsynonymous mutations.

scholarly journals Characterization of Maize Genotypes (Zea mays L.) for Resistance to Striga asiatica and S. hermonthica and Compatibility with Fusarium oxysporum f. sp. strigae (FOS) in Tanzania

Agronomy ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 1004
Author(s):  
John Lobulu ◽  
Hussein Shimelis ◽  
Mark D. Laing ◽  
Arnold Angelo Mushongi ◽  
Admire Isaac Tichafa Shayanowako
Keyword(s):  
Grain Yield ◽  
Fusarium Oxysporum ◽  
Biocontrol Agent ◽  
Zea Mays L ◽  
Control Treatment ◽  
Yield Reduction ◽  
Maize Genotypes ◽  
Significant Yield ◽  
The Mean

Striga species cause significant yield loss in maize varying from 20 to 100%. The aim of the present study was to screen and identify maize genotypes with partial resistance to S. hermonthica (Sh) and S. asiatica (Sa) and compatible with Fusarium oxysporum f. sp. strigae (FOS), a biocontrol agent. Fifty-six maize genotypes were evaluated for resistance to Sh and Sa, and FOS compatibility. Results showed that FOS treatment significantly (p < 0.001) enhanced Striga management compared to the untreated control under both Sh and Sa infestations. The mean grain yield was reduced by 19.13% in FOS-untreated genotypes compared with a loss of 13.94% in the same genotypes treated with FOS under Sh infestation. Likewise, under Sa infestation, FOS-treated genotypes had a mean grain yield reduction of 18% while untreated genotypes had a mean loss of 21.4% compared to the control treatment. Overall, based on Striga emergence count, Striga host damage rating, grain yield and FOS compatibility, under Sh and Sa infestations, 23 maize genotypes carrying farmer preferred traits were identified. The genotypes are useful genetic materials in the development of Striga-resistant cultivars in Tanzania and related agro-ecologies.

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