scholarly journals Developing perennial fruit crop models in APSIM Next Generation using grapevine as an example

2021 ◽  
Author(s):  
Junqi Zhu ◽  
Amber Parker ◽  
Fang Gou ◽  
Rob Agnew ◽  
Linlin Yang ◽  
...  
Keyword(s):  
Yield Components ◽  
Developmental Stages ◽  
Weather Conditions ◽  
Light Interception ◽  
Vitis Vinifera L ◽  
Sink Strength ◽  
Next Generation ◽  
Fruit Crop ◽  
Crop Models ◽  
Carbohydrate Reserve

Abstract A new model for grapevines (Vitis vinifera L.) is the first perennial fruit crop model using the Agricultural Production System sIMulator (APSIM) Next Generation framework. Modules for phenology, light interception, carbohydrate allocation, yield formation and berry composition were adapted or added into APSIM Next Generation to represent the nature of fruit-bearing vines. The simulated grapevine phenological cycle starts with the dormancy phase triggered by a critical photoperiod in autumn, and then goes through the subsequent phenophases sequentially and finally returns to dormancy for a new cycle. The canopy microclimate module within APSIM Next Generation was extended to allow for row crop light interception. The carbohydrate arbitrator was enhanced to consider both sink strength and sink priority to reflect carbohydrate reserve as a concurrent competing sink. Weather conditions and source-sink ratio at critical developmental stages were used to determine potential grapevine yield components e.g., bunch number, berry number and berry fresh weight. The model was calibrated and tested extensively using four detailed datasets. The model captured the variations in the timing of measured budburst, flowering and véraison over 15 seasons across New Zealand for five different varieties. The calculated seasonal dynamics of light interception by the row and alley were consistent with field observations. The model also reproduced the dynamics of dry matter and carbohydrate reserve of different organs, and the wide variation in yield components caused by seasonal weather conditions and pruning regimes. The modelling framework developed in this work can also be used for other perennial fruit crops.

scholarly journals Quantifying the seasonal variations in grapevine yield components based on pre- and post-flowering weather conditions

OENO One ◽  
2020 ◽  
Vol 54 (2) ◽  
Author(s):  
Junqi Zhu ◽  
Rémi Fraysse ◽  
Michael C.T. Trought ◽  
Victoria Raw ◽  
Linlin Yang ◽  
...  
Keyword(s):  
Linear Model ◽  
Seasonal Variations ◽  
Yield Components ◽  
Weather Conditions ◽  
Mixed Linear Model ◽  
Vitis Vinifera L ◽  
Critical Periods ◽  
Current Season ◽  
Sauvignon Blanc

Seasonal differences in weather conditions cause marked variation in grapevine yield. However, quantitative relationships between various yield components and climatic factors at field scales are still lacking. By using a long-term field trial, we quantified the correlation between weather conditions during the key development stages and the yield components of Vitis vinifera L. Sauvignon blanc growing under cool-climate conditions. A long-term phenology and yield monitoring trial using both two-cane and four-cane trained vertically shoot positioned (VSP) Sauvignon blanc vines was established in four vineyards in Marlborough, New Zealand in 2004. Phenology, bunch number, berry mass, yield and meteorology records were collated. A multivariable mixed linear model was used to assess the relationship between various yield components and weather conditions. The critical periods for each yield component and weather factor were optimised based on the maximum likelihood returned from the mixed linear model. The optimised critical periods of temperature for all yield components occurred mainly before 50 % flowering either in the previous season (during inflorescence initiation) and the current season, indicating the importance of the pre-flowering period on yield formation. Out of all weather factors, maximum daily temperature had the largest effect on bunch number and overall yield and strongly influenced berry number and bunch mass. Rainfall near flowering time had a negative effect on berry mass and bunch mass, but post-flowering rainfall had a strong positive effect. The statistical model explained 60 to 85 percent of the seasonal variations in bunch number, berry number, berry and bunch mass and yield per vine.

Development of an embryo germination protocol for shy-seeded grape (Vitis vinifera L.)

2021 ◽  
pp. 1-9
Author(s):  
Ashwini P. Benke ◽  
Ram Krishna ◽  
Roshni R. Samarth ◽  
Shweta S. Dhumal ◽  
Waquar A. Ansari ◽  
...  
Keyword(s):  
Developmental Stages ◽  
Germination Rate ◽  
Germination Percentage ◽  
Vitis Vinifera L ◽  
Growth Media ◽  
Embryo Germination ◽  
Indole Butyric Acid ◽  
Grape Berries ◽  
Benzyl Amino Purine

Abstract Acquisition and germination of seeds are the most desired targets for the improvement of vegetatively propagated crops. In the present study, we developed a potential embryo germination protocol for the Red Globe grape cultivar having a low seed germination rate. Three grape berries at different developmental stages, viz. 50, 60 and 70 days after flowering (DAF), were selected for in-vitro embryo germination. Three growth media, namely Emershad and Ramming (ER), Nitsch and Nitsch (NN) and Murashige and Skoog (MS), and plant growth regulators (benzyl amino purine (BA), 0.5, 0.7 and 0.9 mg/l; indole butyric acid (IBA), 1.0, 1.5 and 2.0 mg/l; and gibberellic acid (GA), 0.1, 0.3 and 0.9 mg/l) were screened individually in different combinations with three amino acids, namely cysteine, glutamine and proline (2.0 μmol/l each). The maximum embryos germination percentage recorded at 70 DAF was 63.33, 47.78 and 45.56% in ER, NN and MS media, respectively, supplemented with 0.9 mg/l BA, 2.0 mg/l IBA, 0.9 mg/l GA and 2.0 μmol glutamine. Glutamine was found to have the most significant impact, and it improved the rescued embryos germination. The present study provides a potential recipe for a medium that can facilitate efficient germination of grape embryos.

Long-term effects of different irrigation strategies on yield components, vine vigour, and grape composition in cv. Cabernet-Sauvignon (Vitis vinifera L.)

2012 ◽  
Vol 30 (5) ◽  
pp. 351-361 ◽  
Author(s):  
Pedro Junquera ◽  
José Ramón Lissarrague ◽  
Laura Jiménez ◽  
Rubén Linares ◽  
Pilar Baeza
Keyword(s):  
Vitis Vinifera ◽  
Yield Components ◽  
Vitis Vinifera L ◽  
Cabernet Sauvignon ◽  
Long Term Effects

scholarly journals Severe Outbreaks of Bunch Rots Caused by Rhizopus stolonifer and Aspergillus niger on Table Grapes in Chile

Plant Disease ◽  
2002 ◽  
Vol 86 (7) ◽  
pp. 815-815 ◽  
Author(s):  
B. A. Latorre ◽  
S. C. Viertel ◽  
I. Spadaro
Keyword(s):  
Aspergillus Niger ◽  
Cultural Practices ◽  
Weather Conditions ◽  
Soluble Solids ◽  
Vitis Vinifera L ◽  
Rhizopus Stolonifer ◽  
Thompson Seedless ◽  
Table Grapes ◽  
Hypodermic Syringe ◽  
Black Mold

Severe outbreaks of bunch rots (BR) have occurred recently during harvest of table grapes (Vitis vinifera L.) in Chile. Previously, BR was almost exclusively associated with Botrytis cinerea Pers.:Fr. (2,3); however, in 2000 to 2002, BR symptoms were associated with black molds and possibly nonfilamentous yeasts and bacteria. Cvs. Thompson Seedless, Flame Seedless, Ruby Seedless, and Red Globe were severely affected. Symptoms start at the pedicels as soft, watery rots that partially or completely decay infected berries. Longitudinal cracks are produced, a black mold usually develops along the crack fissures, and the skin of the berry turns light gray. Isolations on potato dextrose agar acidified with 1 N lactic acid (APDA) at 0.5 ml/liter, consistently yielded Rhizopus stolonifer (Ehrenb. ex Fr.) Vuillemin and Aspergillus niger Tiegh. R. stolonifer on APDA produced a white-to-gray aerial and nonseptate mycelium, black and globose sporangia with an elliptical collumela, one-celled, globose to oval, striated, almost hyaline sporangiospores, rhizoids, and stolons. A. niger produced septate mycelium. Single-celled, black, rough walled, globose conidia developed on short chains on the second phialides at the tip of globose, upright conidiophores. Mature (soluble solids >16%) detached berries of cv. Thompson Seedless were inoculated with sporangiospores (≈107 spores per ml) of R. stolonifer isolates RS6, RS52, RS73, and RS79 and conidia (≈108 conidia per ml) of A. niger isolates AN12, AN69, and AN75. When berries were aseptically punctured with a sterile hypodermic syringe prior to inoculation, 60 to 86.7% and 42.5 to 100% of berries were infected with R. stolonifer and A. niger, respectively, and both developed BR symptoms (significantly different from control berries) after 48 h in humid chambers at 23°C. Injuries were needed for infection since no infection or only 23.3% of noninjured berries were infected with R. stolonifer and A. niger, respectively. For both pathogens, there was a significant (P < 0.043) interaction between isolates and the presence or absence of injuries. Both pathogens were successfully reisolated on APDA. Fungicide sensitivity tests were performed on detached cv. Thompson Seedless berries challenged by placing an ≈6 μl-drop of inoculum suspension (106 or 107 spores per ml of R. stolonifer isolate RS52 and A. niger isolate AN12, respectively) on injured berries. Pyraclostrobin (0.067 mg/ml) mixed with nicobifen at 0.134 mg/ml (BAS 516 01 F at 0.201 mg a.i./ml, BASF) and copper oxide at 1.2 mg/ml (Cuprodul 60 WP, Quimetal Chile) significantly (P < 0.01) inhibited infection (100% control) by R. stolonifer and A. niger. R. stolonifer was completely controlled by dicloran at 1.88 mg/ml (Botran 75 WP) and partially controlled by captan at 1.6 mg/ml (Captan 80 WP), but A. niger was not controlled by either fungicide. To our knowledge this is the first report of R. stolonifer causing BR of table grape in Chile (4). The severe outbreaks may be associated with warm weather conditions during harvest and injuries caused by birds, insects, or cultural practices. Infection caused by R. stolonifer or A. niger may be followed by sour rot organisms (yeasts or bacteria), as has been suggested elsewhere (1,2). References: (1) E. Gravot et al. Phytoma 543:36, 2001. (2) W. B. Hewitt Page 26 in: Compendium of Grape Diseases, American Phytopathological Society, St. Paul, MN, 1994. (3) B. A. Latorre and G. Vásquez. Aconex (Chile) 52:16, 1996. (4) F. Mujica and C. Vergara. Flora Fungosa Chilena. Universidad de Chile, Facultad de Agronomiacute;a, Santiago, Chile, 1980.

scholarly journals Leaf-to-Fruit Ratios in Vitis vinifera L. cv. “Sauvignon Blanc”, “Carmenère”, “Cabernet Sauvignon”, and “Syrah” Growing in Maule Valley (Chile): Influence on Yield and Fruit Composition

Agriculture ◽  
2019 ◽  
Vol 9 (8) ◽  
pp. 176
Author(s):  
Gastón Gutiérrez-Gamboa ◽  
Irina Díaz-Galvéz ◽  
Nicolás Verdugo-Vásquez ◽  
Yerko Moreno-Simunovic
Keyword(s):  
Vitis Vinifera ◽  
Yield Components ◽  
Soluble Solids ◽  
Vitis Vinifera L ◽  
Cabernet Sauvignon ◽  
Clear Trend ◽  
Total Polyphenol ◽  
Sauvignon Blanc ◽  
Fruit Composition ◽  
Berry Composition

A trial was conducted during the 2005–2006 season in order to determine the effects of different leaf-to-fruit ratios on yield components and fruit composition in four Vitis vinifera L. cultivars. The treatments consisted of selecting shoots of four lengths (>1.3 m, 1.3–0.8 m, 0.8–0.4 m, and <0.4 m) with two crop levels (1–2 clusters/shoot), which allowed defining eight ratios. Berry composition and yield components were measured. The treatments affected the accumulation of soluble solids in “Sauvignon blanc”, “Cabernet Sauvignon”, and “Syrah”, delaying it as the ratio decreased. All yield components were affected in “Sauvignon blanc”, while bunch weight and the number of berries per bunch were altered without a clear trend. None of the yield components were affected in “Cabernet Sauvignon”, while the lowest ratio presented the lowest number of berries per bunch in “Syrah”. Total polyphenol index (TPI) was affected in “Carmenère” without a clear trend. A highly significant correlation was found between shoot length and leaf area in all studied cultivars. As the ratio increased, the shoot lignification increased in “Sauvignon blanc”. However, studies must be conducted during more seasons to establish better conclusions about the effects of leaf-to-fruit ratios on yield and fruit composition.

Sowing date affects yield components of canarygrass seed

2003 ◽  
Vol 83 (2) ◽  
pp. 357-362 ◽  
Author(s):  
J. L. Bodega ◽  
M. A. De Dios ◽  
M. M. Pereyra Iraola
Keyword(s):  
Seed Yield ◽  
Yield Components ◽  
Dry Matter ◽  
Developmental Stages ◽  
Block Design ◽  
Sowing Date ◽  
Growing Seasons ◽  
Sowing Dates ◽  
Four Blocks ◽  
Number Of Seeds

Canarygrass (Phalaris canariensis L.) crops are sown from June to mid-September in the southeastern area of the province of Buenos Aires, Argentina. Sowing dates in this range result in different growing temperatures and photoperiods that affect the duration of developmental stages, biomass production, and seed yield and its components. For Argentina, there are no reported studies that address these effects. This study on the effects of sowing date was conducted during four growing seasons (1996–1999) at the Instituto Nacional de Tecnologí a Agropecuaria (INTA) Experimental Station at Balcarce, Argentina, using a population provided by Dr. Jaime Lloveras, University of Leyda, Spain. Different seeding dates were chosen from June to mid-September. The experiment was a randomized complete block design with four blocks. When the sowing date was delayed, total dry matter (DM) decreased. For early sowing dates seed yield was constant, but after 10 August it was reduced by 1.5% for each day of delay. Earlier sowing increased the duration of pre-anthesis development with greater uniformity in panicle size and the number of seeds. Seed yield was related lin early to the number of seeds and plant dry matter yield (DMY). The rate of progress from emergence to anthesis (1/days from emergence to anthesis) was proportional to the mean photoperiod. Under the environmental conditions in Balcarce, the accumulated required thermal units for anthesis was reduced when sowing was delayed from June to September. This reduction was related to the photoperiod and was estimated as –189.3 growing degree-days per hour of photoperiod increment. Key words: Canarygrass, seed yield, sowing date, yield components

scholarly journals Genome-Wide Identification of PIFs in Grapes (Vitis vinifera L.) and Their Transcriptional Analysis under Lighting/Shading Conditions

Genes ◽  
2018 ◽  
Vol 9 (9) ◽  
pp. 451 ◽  
Author(s):  
Kekun Zhang ◽  
Ting Zheng ◽  
Xudong Zhu ◽  
Songtao Jiu ◽  
Zhongjie Liu ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Amino Acid ◽  
Vitis Vinifera ◽  
Developmental Stages ◽  
Light Signal ◽  
Transcriptional Analysis ◽  
Vitis Vinifera L ◽  
Syntenic Block ◽  
Transcription Level ◽  
Light Signal Transduction

Phytochrome-interacting factors (PIFs), as the basic helix–loop–helix (bHLH) transcription factors, are the primary signaling partners for phytochromes (PHY) that play a key role in PHY-mediated light signal transduction. At present, there are few studies on PIFs in fruit trees. In order to clarify the status of PIFs in grapevines, we identified members of the grape PIFs family and conducted phylogenetic and expression analysis. We identified PIF1, PIF3, PIF4, and PIF7 in PIFs families of the grapevine (Vitis vinifera L.), which were distributed on four different chromosomes with similar gene structures. Except for the closer relationship with PIF1 of citrus, PIFs of grape were distant from the other fruit species such as apple, pear, peach, and strawberry. The VvPIFs (except VvPIF4) were located in the syntenic block with those from Arabidopsis thaliana, Solanum lycopersicum, or Citrus sinensis. In addition to PIF1, all PIFs in grapevines have conserved active PHYB binding (APB) sequences. VvPIF1 has a conserved PIF1-specific active PHYA binding (APA) sequence, while amino acid mutations occurred in the specific APA sequence in VvPIF3. Interestingly, two specific motifs were found in the PIF4 amino acid sequence. The photoreceptor-related elements in the VvPIFs promoter region were the most abundant. PIF1, LONG HYPOCOTYL 5 (HY5) and PIF3, PIF4, GIBBERELLIC ACID INSENSITIVE 1 (GAI1) may interact with each other and participate together in light signal transduction. The relative expression levels of the VvPIFs showed diverse patterns in the various organs at different developmental stages, of which PIF4 was most highly expressed. Prior to maturation, the expression of PIF4 and PIF7 in the skin of the different cultivars increased, while the expression of all PIFs in the flesh decreased. The transcription level of PIFs in grape leaves was sensitive to changes in lighting and shading. Shading treatment was beneficial for enhancing the transcription level of VvPIFs, but the effect on VvPIF3 and VvPIF4 was time-controlled. We concluded that PIFs in grapevines are both conservative and species-specific. The identification and analysis of grape PIFs could provide a theoretical foundation for the further construction of grape light regulation networks.

scholarly journals How to use new biology to guide therapy in multiple myeloma

Hematology ◽  
2012 ◽  
Vol 2012 (1) ◽  
pp. 342-349 ◽  
Author(s):  
Gareth J. Morgan ◽  
Martin F. Kaiser
Keyword(s):  
Multiple Myeloma ◽  
Molecular Mechanisms ◽  
Developmental Stages ◽  
Survival Rates ◽  
Current Treatment ◽  
Next Generation ◽  
Molecular Subgroups ◽  
Treatment Protocols ◽  
Sequencing Technologies ◽  
A Genome

Abstract Recent advances in multiple myeloma (MM) therapy have led to significantly longer median survival rates and some patients being cured. At the same time, our understanding of MM biology and the molecular mechanisms driving the disease is constantly improving. Next-generation sequencing technologies now allow insights into the genetic aberrations in MM at a genome-wide scale and across different developmental stages in the course of an individual tumor. This improved knowledge about MM biology needs to be rapidly translated and transformed into diagnostic and therapeutic applications to finally achieve cure in a larger proportion of patients. As a part of these translational efforts, novel drugs that inhibit oncogenic proteins overexpressed in defined molecular subgroups of the disease, such as FGFR3 and MMSET in t(4;14) MM, are currently being developed. The potential of targeted next-generation diagnostic tests to rapidly identify clinically relevant molecular subgroups is being evaluated. The technical tools to detect and define tumor subclones may potentially become clinically relevant because intraclonal tumor heterogeneity has become apparent in many cancers. The emergence of different MM subclones under the selective pressure of treatment is important in MM, especially in the context of maintenance therapy and treatment for asymptomatic stages of the disease. Finally, novel diagnostic and therapeutic achievements have to be implemented into innovative clinical trial strategies with smaller trials for molecularly defined high-risk patients and large trials with a long follow-up for the patients most profiting from the current treatment protocols. These combined approaches will hopefully transform the current one-for-all care into a more tailored, individual therapeutic strategy for MM patients.

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