Physiological Characteristics and Transcriptomic Dissection in Two Root Segments with Contrasting Net Fluxes of Ammonium and Nitrate of Poplar Under Low Nitrogen Availability

2021 ◽  
Author(s):  
Yan Lu ◽  
Shurong Deng ◽  
Zhuorong Li ◽  
Jiangting Wu ◽  
Dongyue Zhu ◽  
...  
Keyword(s):  
Organic Acids ◽  
N Uptake ◽  
Root Segment ◽  
N Availability ◽  
Hub Gene ◽  
Root Segments ◽  
Gene Coexpression ◽  
Coexpression Networks ◽  
Low Nitrogen ◽  
Net Fluxes

Abstract To investigate physiological and transcriptomic regulation mechanisms underlying the distinct net fluxes of NH4+ and NO3- in different root segments of Populus species under low nitrogen (N) conditions, we used saplings of P. × canescens supplied with either 500 (normal N) or 50 (low N) μM NH4NO3. The net fluxes of NH4+ and NO3-, and the concentrations of NH4+, amino acids, organic acids and the enzymatic activities of nitrite reductase (NiR) and glutamine synthetase (GS) in root segment II (SII, 35-70 mm to the apex) were lower than those in root segment I (SI, 0-35 mm to the apex). The net NH4+ influxes and the concentrations of organic acids were elevated, whereas the concentrations of NH4+ and NO3-, and the activities of NiR and GS were reduced in SI and SII in response to low N. A number of genes were significantly differentially expressed in SII vs SI and in both segments grown under low vs normal N conditions, and these genes were mainly involved in transport of NH4+ and NO3-, N metabolism, and adenosine triphosphate (ATP) synthesis. Moreover, the hub gene coexpression networks were dissected and correlated with N physiological processes in SI and SII under normal and low N conditions. These results suggest that the hub gene coexpression networks play pivotal roles in regulating N uptake and assimilation, amino acid metabolism as well as the levels of organic acids from TCA cycle in the two root segments of poplars in acclimation to low N availability.

Superior growth, N uptake and NH4+ tolerance in the giant bamboo Phyllostachys edulis over the broad-leaved tree Castanopsis fargesii at elevated NH4+ may underlie community succession and favor the expansion of bamboo

2020 ◽  
Vol 40 (11) ◽  
pp. 1606-1622 ◽  
Author(s):  
Na Zou ◽  
Weiming Shi ◽  
Lihan Hou ◽  
Herbert J Kronzucker ◽  
Ling Huang ◽  
...  
Keyword(s):  
Community Structure ◽  
N Uptake ◽  
N Availability ◽  
Competitive Growth ◽  
Phyllostachys Edulis ◽  
Non Invasive ◽  
Castanopsis Fargesii ◽  
Phyllostachys Heterocycla ◽  
Subtropical Species ◽  
Net Fluxes

Abstract The unbridled expansion of bamboo has imposed serious threats on ecosystem processes and functions. Considerable evidence indicates that bamboo invasions can alter plant-available soil nitrogen (N) pools and rates of N cycling, but the consequences of altered N availability for plant growth and community structure have thus far been poorly characterized. The primary soil-accessible N forms for most plants are ammonium (NH4+) and nitrate (NO3−), but plants differ in their ability to use the different N forms, and these differences can be related to their ecological characteristics and drive community structure. In this context, we evaluated the growth response, N uptake and interspecific competition in two subtropical species, Phyllostachys edulis (Carrière) J. Houzeau (Synonym Phyllostachys heterocycla Carrière) and Castanopsis fargesii Franch., dominant species of bamboo and secondary evergreen broad-leaved forests, respectively, under changing N availability in seedlings supplied with different N concentrations and NH4+/NO3− proportions, in vermiculite culture, in a controlled environment. The results show that (i) both species display an NH4+ preference at elevated N concentrations. The growth of P. edulis seedlings was strongly enhanced at increased ratios of NH4+ to NO3− especially at higher N concentrations, but to a much lesser extent in C. fargesii. (ii) NH4+ preference at the level of N uptake in both species was confirmed by the Non-invasive Micro-test Technology and by examining 15N signatures. Phyllostachys edulis had higher NH4+ net fluxes and N concentration under NH4+ treatments than C. fargesii. (iii) NH4+ at higher concentrations caused toxicity in both species as it inhibited root growth and even caused seedling death, but P. edulis had a higher NH4+-tolerance threshold (24 mM) than C. fargesii (16 mM). (iv) When mixed-species cultures were examined in an NH4+-rich medium, the growth of C. fargesii, but not P. edulis, was significantly inhibited compared with growth in monoculture. Therefore, P. edulis exhibited stronger plasticity and adaptation to changing N availability, whereas C. fargesii had low responsiveness and capacity to acclimate to soil N changes. Phyllostachys edulis displayed a significant competitive growth advantage compared with C. fargesii on NH4+-dominated substrates.

scholarly journals Development of an Online Tool for Tracking Soil Nitrogen to Improve the Environmental Performance of Maize Production

2021 ◽  
Vol 13 (10) ◽  
pp. 5649
Author(s):  
Giovani Preza-Fontes ◽  
Junming Wang ◽  
Muhammad Umar ◽  
Meilan Qi ◽  
Kamaljit Banger ◽  
...  
Keyword(s):  
Real Time ◽  
N Uptake ◽  
Growing Season ◽  
Weather Data ◽  
N Availability ◽  
Soil N ◽  
N Losses ◽  
Online Tool ◽  
Support Tool ◽  
Soil N Availability

Freshwater nitrogen (N) pollution is a significant sustainability concern in agriculture. In the U.S. Midwest, large precipitation events during winter and spring are a major driver of N losses. Uncertainty about the fate of applied N early in the growing season can prompt farmers to make additional N applications, increasing the risk of environmental N losses. New tools are needed to provide real-time estimates of soil inorganic N status for corn (Zea mays L.) production, especially considering projected increases in precipitation and N losses due to climate change. In this study, we describe the initial stages of developing an online tool for tracking soil N, which included, (i) implementing a network of field trials to monitor changes in soil N concentration during the winter and early growing season, (ii) calibrating and validating a process-based model for soil and crop N cycling, and (iii) developing a user-friendly and publicly available online decision support tool that could potentially assist N fertilizer management. The online tool can estimate real-time soil N availability by simulating corn growth, crop N uptake, soil organic matter mineralization, and N losses from assimilated soil data (from USDA gSSURGO soil database), hourly weather data (from National Weather Service Real-Time Mesoscale Analysis), and user-entered crop management information that is readily available for farmers. The assimilated data have a resolution of 2.5 km. Given limitations in prediction accuracy, however, we acknowledge that further work is needed to improve model performance, which is also critical for enabling adoption by potential users, such as agricultural producers, fertilizer industry, and researchers. We discuss the strengths and limitations of attempting to provide rapid and cost-effective estimates of soil N availability to support in-season N management decisions, specifically related to the need for supplemental N application. If barriers to adoption are overcome to facilitate broader use by farmers, such tools could balance the need for ensuring sufficient soil N supply while decreasing the risk of N losses, and helping increase N use efficiency, reduce pollution, and increase profits.

scholarly journals Morphological and Physiological Root Traits and Their Relationship with Nitrogen Uptake in Wheat Varieties Released from 1915 to 2013

Agronomy ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1149
Author(s):  
Guglielmo Puccio ◽  
Rosolino Ingraffia ◽  
Dario Giambalvo ◽  
Gaetano Amato ◽  
Alfonso S. Frenda
Keyword(s):  
Durum Wheat ◽  
Root System ◽  
N Uptake ◽  
Specific Root Length ◽  
Root Traits ◽  
Wheat Breeding ◽  
N Availability ◽  
Wheat Varieties ◽  
Uptake Efficiency ◽  
Positive Effects

Identifying genotypes with a greater ability to absorb nitrogen (N) may be important to reducing N loss in the environment and improving the sustainability of agricultural systems. This study extends the knowledge of variability among wheat genotypes in terms of morphological or physiological root traits, N uptake under conditions of low soil N availability, and in the amount and rapidity of the use of N supplied with fertilizer. Nine genotypes of durum wheat were chosen for their different morpho-phenological characteristics and year of their release. The isotopic tracer 15N was used to measure the fertilizer N uptake efficiency. The results show that durum wheat breeding did not have univocal effects on the characteristics of the root system (weight, length, specific root length, etc.) or N uptake capacity. The differences in N uptake among the studied genotypes when grown in conditions of low N availability appear to be related more to differences in uptake efficiency per unit of weight and length of the root system than to differences in the morphological root traits. The differences among the genotypes in the speed and the ability to take advantage of the greater N availability, determined by N fertilization, appear to a certain extent to be related to the development of the root system and the photosynthesizing area. This study highlights some variability within the species in terms of the development, distribution, and efficiency of the root system, which suggests that there may be sufficient grounds for improving these traits with positive effects in terms of adaptability to difficult environments and resilience to climate change.

scholarly journals Gene coexpression networks reveal molecular interactions underlying cichlid jaw modularity

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Pooja Singh ◽  
Ehsan Pashay Ahi ◽  
Christian Sturmbauer
Keyword(s):  
In Silico ◽  
Regulatory Networks ◽  
Evolutionary Significance ◽  
Cichlid Species ◽  
Cichlid Fishes ◽  
Gene Coexpression ◽  
Modular Evolution ◽  
Jaw Apparatus ◽  
Coexpression Networks ◽  
Pharyngeal Jaw

Abstract Background The oral and pharyngeal jaw of cichlid fishes are a classic example of evolutionary modularity as their functional decoupling boosted trophic diversification and contributed to the success of cichlid adaptive radiations. Most studies until now have focused on the functional, morphological, or genetic aspects of cichlid jaw modularity. Here we extend this concept to include transcriptional modularity by sequencing whole transcriptomes of the two jaws and comparing their gene coexpression networks. Results We show that transcriptional decoupling of gene expression underlies the functional decoupling of cichlid oral and pharyngeal jaw apparatus and the two units are evolving independently in recently diverged cichlid species from Lake Tanganyika. Oral and pharyngeal jaw coexpression networks reflect the common origin of the jaw regulatory program as there is high preservation of gene coexpression modules between the two sets of jaws. However, there is substantial rewiring of genetic architecture within those modules. We define a global jaw coexpression network and highlight jaw-specific and species-specific modules within it. Furthermore, we annotate a comprehensive in silico gene regulatory network linking the Wnt and AHR signalling pathways to jaw morphogenesis and response to environmental cues, respectively. Components of these pathways are significantly differentially expressed between the oral and pharyngeal jaw apparatus. Conclusion This study describes the concerted expression of many genes in cichlid oral and pharyngeal jaw apparatus at the onset of the independent life of cichlid fishes. Our findings suggest that – on the basis of an ancestral gill arch network—transcriptional rewiring may have driven the modular evolution of the oral and pharyngeal jaws, highlighting the evolutionary significance of gene network reuse. The gene coexpression and in silico regulatory networks presented here are intended as resource for future studies on the genetics of vertebrate jaw morphogenesis and trophic adaptation.

scholarly journals Genotypic Difference in the Responses to Nitrogen Fertilizer Form in Tibetan Wild and Cultivated Barley

Plants ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 595
Author(s):  
Shama Naz ◽  
Qiufang Shen ◽  
Jonas Lwalaba Wa Lwalaba ◽  
Guoping Zhang
Keyword(s):  
Wild Barley ◽  
Growth Parameters ◽  
Inorganic Nitrogen ◽  
N Uptake ◽  
Total Soluble Protein ◽  
Organic N ◽  
Genotypic Difference ◽  
N Availability ◽  
Tibetan Wild Barley ◽  
Cultivated Barley

Nitrogen (N) availability and form have a dramatic effect on N uptake and assimilation in plants, affecting growth and development. In the previous studies, we found great differences in low-N tolerance between Tibetan wild barley accessions and cultivated barley varieties. We hypothesized that there are different responses to N forms between the two kinds of barleys. Accordingly, this study was carried out to determine the response of four barley genotypes (two wild, XZ16 and XZ179; and two cultivated, ZD9 andHua30) under 4Nforms (NO3−, NH4+, urea and glycine). The results showed significant reduction in growth parameters such as root/shoot length and biomass, as well as photosynthesis parameters and total soluble protein content under glycine treatment relative to other N treatments, for both wild and cultivated barley, however, XZ179 was least affected. Similarly, ammonium adversely affected growth parameters in both wild and cultivated barleys, with XZ179 being severely affected. On the other hand, both wild and cultivated genotypes showed higher biomass, net photosynthetic rate, chlorophyll and protein in NO3− treatment relative to other three N treatments. It may be concluded that barley undisputedly grows well under inorganic nitrogen (NO3−), however in response to the organic N wild barley prefer glycine more than cultivated barely.

scholarly journals The state of the art in soybean transcriptomics resources and gene coexpression networks

2021 ◽  
Author(s):  
Fabricio Almeida-Silva ◽  
Kanhu C Moharana ◽  
Thiago M Venancio
Keyword(s):  
State Of The Art ◽  
The State ◽  
Gene Coexpression Network ◽  
Rna Seq ◽  
Transcriptomic Data ◽  
The Past ◽  
Gene Coexpression ◽  
Genomics Research ◽  
Public Repositories ◽  
Coexpression Networks

Abstract In the past decade, over 3000 samples of soybean transcriptomic data have accumulated in public repositories. Here, we review the state of the art in soybean transcriptomics, highlighting the major microarray and RNA-seq studies that investigated soybean transcriptional programs in different tissues and conditions. Further, we propose approaches for integrating such big data using gene coexpression network and outline important web resources that may facilitate soybean data acquisition and analysis, contributing to the acceleration of soybean breeding and functional genomics research.

Impact of tillage and landscape position on nitrogen availability and yield of spring wheat in the Brown soil zone in southwestern Saskatchewan

1998 ◽  
Vol 78 (3) ◽  
pp. 563-572 ◽  
Author(s):  
V. Jowkin ◽  
J. J. Schoenau
Keyword(s):  
Spring Wheat ◽  
Nitrogen Availability ◽  
N Uptake ◽  
Wheat Crop ◽  
N Availability ◽  
Inorganic N ◽  
Brown Soil ◽  
Soil Zone ◽  
No Till ◽  
Crop N Uptake

Nitrogen availability to a spring wheat crop was examined in the cropping season in a side-by-side comparison of no-till (first year) and tillage fallow in an undulating farm field in the Brown soil zone in southwestern Saskatchewan. Thirty different sampling points along a grid in each tillage landscape were randomly selected, representing 10 each of shoulder, footslope and level landscape positions. Nitrogen availability was studied i) by profile inorganic N content ii) by crop N uptake and yield of spring wheat (Triticum aestivum L.) and iii) by 15N tracer technique and in situ burial of anion exchange resin membranes (AEM).Pre-seeding available moisture content of the surface soil samples was significantly higher under no-till compared with tillage fallow. However, no significant differences in pre-seeding profile total inorganic N, crop N uptake and yield were observed between the treatments. At the landform scale, shoulder positions of the respective tillage systems had lower profile inorganic N, crop N uptake and yield compared with other slope positions. Soil N supply power, as determined by 15N tracer and AEM techniques, was not significantly different between the tillage treatments, indicating that N availability is not likely to be greatly affected in initial years by switching to no-till fallow in these soils under normal moisture conditions. Key words: Summerfallow, landscape, nitrogen, wheat

scholarly journals THE ROLE OF MINERAL NUTRITION ON YIELDS AND FRUIT QUALITY IN GRAPEVINE, PEAR AND APPLE

2015 ◽  
Vol 37 (4) ◽  
pp. 1089-1104 ◽  
Author(s):  
GUSTAVO BRUNETTO ◽  
GEORGE WELLINGTON BASTOS DE MELO ◽  
MORENO TOSELLI ◽  
MAURIZIO QUARTIERI ◽  
MASSIMO TAGLIAVINI
Keyword(s):  
Fruit Quality ◽  
Skin Color ◽  
N Uptake ◽  
Maximum Yield ◽  
Grape Juice ◽  
Fruit Trees ◽  
N Availability ◽  
Wine Quality ◽  
Fruit Skin ◽  
Soluble Solid

ABSTRACT Fertilization of temperate fruit trees, such as grapevine ( Vitis spp.), apple ( Malus domestica), and pear ( Pyrus communis) is an important tool to achive maximum yield and fruit quality. Fertilizers are provided when soil fertility does not allow trees to express their genetic potential, and time and rate of application should be scheduled to promote fruit quality. Grapevine berries, must and wine quality are affected principally by N, that regulate the synthesis of some important compounds, such as anthocyanins, which are responsible for coloring of the must and the wine. Fermenation of the must may stop in grapes with low concentration of N because N is requested in high amount by yeasts. An N excess may increase the pulp to peel ratio, diluting the concentration of anthocyanins and promoting the migration of anthocyanins from berries to the growing plant organs; a decrease of grape juice soluble solid concentration is also expected because of an increase in vegetative growth. Potassium is also important for wine quality contributing to adequate berry maturation, concentration of sugars, synthesis of phenols and the regulation of pH and acidity. In apple and pear, Ca and K are important for fruit quality and storage. Potassium is the most important component of fruit, however, any excess should be avoided and an adequate K:Ca balance should be achieved. Adequate concentration of Ca in the fruit prevents pre- and post-harvest fruit disorders and, at the same time, increases tolerance to pathogens. Although N promotes adequate growth soil N availability should be monitored to avoid excessive N uptake that may decrease fruit skin color and storability.

Sign in / Sign up

Export Citation Format

Share Document