scholarly journals QTLs for Resistance to Fusarium Ear Rot in a Multiparent Advanced Generation Intercross (MAGIC) Maize Population

Plant Disease ◽  
2019 ◽  
Vol 103 (5) ◽  
pp. 897-904 ◽  
Author(s):  
A. Butrón ◽  
R. Santiago ◽  
A. Cao ◽  
L. F. Samayoa ◽  
R. A. Malvar
Keyword(s):  
Quantitative Characteristic ◽  
Fusarium Ear Rot ◽  
Ear Rot ◽  
Breeding Programs ◽  
Minor Qtls ◽  
Maize Population ◽  
Alternative Approaches ◽  
Genomic Regions ◽  
Advanced Generation ◽  
Small Additive

Alternative approaches to linkage and association mapping using inbred panels may allow further insights into loci involved in resistance to Fusarium ear rot and lead to the discovery of suitable markers for breeding programs. Here, the suitability of a maize multiparent advanced-generation intercross population for detecting quantitative trait loci (QTLs) associated with Fusarium ear rot resistance was evaluated and found to be valuable in uncovering genomic regions containing resistance-associated loci in temperate materials. In total, 13 putative minor QTLs were located over all of the chromosomes, except chromosome 5, and frequencies of favorable alleles for resistance to Fusarium ear rot were, in general, high. These findings corroborated the quantitative characteristic of resistance to Fusarium ear rot in which many loci have small additive effects. Present and previous results indicate that crucial regions such as 210 to 220 Mb in chromosome 3 and 166 to 173 Mb in chromosome 7 (B73-RefGen-v2) contain QTLs for Fusarium ear rot resistance and fumonisin content.

scholarly journals Genomics of maize resistance to kernel contamination with fumonisins using a multiparental advanced generation InterCross maize population (MAGIC)

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Noemi Gesteiro ◽  
Ana Cao ◽  
Rogelio Santiago ◽  
Rosa Ana Malvar ◽  
Ana Butrón
Keyword(s):  
Genomic Selection ◽  
Genome Wide Association Study ◽  
Fusarium Verticillioides ◽  
Fungal Species ◽  
Environment Interaction ◽  
Ear Rot ◽  
Maize Population ◽  
A Genome ◽  
Trait Locus ◽  
Advanced Generation

AbstractMaize kernel is exposed to several fungal species, most notably Fusarium verticillioides, which can contaminate maize kernels with fumonisins. In an effort to increase genetic gains and avoid the laborious tasks of conventional breeding, the use of marker-assisted selection or genomic selection programs was proposed. To this end, in the present study a Genome Wide Association Study (GWAS) was performed on 339 RILs of a Multiparental Advanced Generation InterCross (MAGIC) population that had previously been used to locate Quantitative Trait Locus (QTL) for resistance to Fusarium Ear Rot (FER). Six QTLs for fumonisin content were detected in the bins 3.08, 4.07, 4.10, 7.03-7.04, 9.04-9.05 and 10.04-10.5. Five of the six QTLs collocate in regions where QTLs for FER were also found. However, the genetic variation for fumonisin content in kernel is conditioned by many other QTLs of small effect that could show QTL x environment interaction effects. Although a genomic selection approach to directly reduce fumonisin content in the kernel could be suitable, improving resistance to fumonisin content by genomic selection for FER would be more advisable.

scholarly journals Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Nicole Pretini ◽  
Leonardo S. Vanzetti ◽  
Ignacio I. Terrile ◽  
Guillermo Donaire ◽  
Fernanda G. González
Keyword(s):  
Doubled Haploid ◽  
Marker Assisted Selection ◽  
Triticum Aestivum L ◽  
Physiological Model ◽  
Yield Potential ◽  
Breeding Programs ◽  
Per Se ◽  
Genomic Regions ◽  
Fertility Traits ◽  
Selection Of

Abstract Background In breeding programs, the selection of cultivars with the highest yield potential consisted in the selection of the yield per se, which resulted in cultivars with higher grains per spike (GN) and occasionally increased grain weight (GW) (main numerical components of the yield). In this study, quantitative trait loci (QTL) for GW, GN and spike fertility traits related to GN determination were mapped using two doubled haploid (DH) populations (Baguette Premium 11 × BioINTA 2002 and Baguette 19 × BioINTA 2002). Results In total 305 QTL were identified for 14 traits, out of which 12 QTL were identified in more than three environments and explained more than 10% of the phenotypic variation in at least one environment. Eight hotspot regions were detected on chromosomes 1A, 2B, 3A, 5A, 5B, 7A and 7B in which at least two major and stable QTL sheared confidence intervals. QTL on two of these regions (R5A.1 and R5A.2) have previously been described, but the other six regions are novel. Conclusions Based on the pleiotropic analysis within a robust physiological model we conclude that two hotspot genomic regions (R5A.1 and R5A.2) together with the QGW.perg-6B are of high relevance to be used in marker assisted selection in order to improve the spike yield potential. All the QTL identified for the spike related traits are the first step to search for their candidate genes, which will allow their better manipulation in the future.

scholarly journals The Reaction of some Maize Hybrids, Created at ARDS TURDA, to Fusarium spp. Infection

2017 ◽  
Vol 74 (1) ◽  
pp. 47
Author(s):  
Laura ȘOPTEREAN ◽  
Loredana SUCIU ◽  
Ana Maria VĂLEAN ◽  
Felicia MUREŞANU ◽  
Carmen PUIA
Keyword(s):  
Production Capacity ◽  
Climatic Conditions ◽  
Fusarium Ear Rot ◽  
Ear Rot ◽  
Artificial Infection ◽  
Fusarium Spp ◽  
Corn Hybrids ◽  
Maize Hybrids ◽  
Resistance Reaction

The most important disease of maize in Romania are stalk and ear rot, which caused yield losses in average of 20%. The resistant hibrids represent one of the most efficient solution for reducing the field loses caused by Fusarium spp. on the maize (Nagy et al., 2006). Diseases caused by Fusarium spp. can affect the yield and grain quality of maize because of contamination with numerous mycotoxins produced by these fungi (Czembor et al., 2015). The purpose of this paper was to know more about the reaction of different maize hybrids to Fusarium and the evaluating the effect of ear rot on the yield ability and mycotoxins accumulation. The experiments carried out at ARDS Turda, during four years (2012-2015). The biological material was represented by 8 hybrids, from different maturity groups, tested in two infection conditions with Fusarium spp. (natural and artificial infections). The temperature and rainfalls of the four years of experiments corresponding to the vegetation of maize (april-september) are influenced favourably the pathogenesis of stalk and ear rot caused by Fusarium spp. and a good discrimination of the resistance reaction of genotypes. Fusarium ear rot has significantly affected production capacity and chemical composition of corn hybrids tested. In conditions of artificial infection with Fusarium spp. was a decrease in the content of starch, fat and increased protein content compared with artificially inoculated variants. The quantity of fumonizin B1+B2 has reached to 5630 μg/kg in conditions of artificial infection. There are negative correlations between production capacity and degree of attack of fusarium ear rot; depending on the reacting genotypes tested increasing disease causes production decrease. The response of maize hybrids to Fusarium infection is influenced by infection and climatic conditions. These factors affect production both in terms of quantity and quality and accumulation of mycotoxins.

scholarly journals Mapping and Characterization QTLs for Phenological Traits in Seven Pedigree-connected Peach Families

2020 ◽  
Author(s):  
Zena Rawandoozi ◽  
Timothy Hartmann ◽  
Silvia Carpenedo ◽  
Ksenija Gasic ◽  
Cassia da Silva Linge ◽  
...  
Keyword(s):  
Prunus Persica ◽  
Phenotypic Variance ◽  
Breeding Programs ◽  
Large Tree ◽  
Early Seedling ◽  
Sib Families ◽  
Functional Alleles ◽  
Genomic Regions ◽  
Marker Identification

Abstract BackgroundEnvironmental adaptation and expanding harvest seasons are primary goals of most peach [Prunus persica (L.) Batsch] breeding programs. Breeding perennial crops is a challenging task due to their long breeding cycles and large tree size. Pedigree-based analysis using pedigreed families followed by haplotype construction creates a platform for QTL and marker identification, validation, and the use of marker-assisted selection in breeding programs.ResultsPhenotypic data of seven F1 low to medium chill full-sib families were collected over two years at two locations and genotyped using the 9K SNP Illumina array. Three QTLs were discovered for bloom date (BD) and mapped on linkage group 1 (LG1) (172 – 182 cM), LG4 (48 – 54 cM), and LG7 (62 – 70 cM), explaining 17-54%, 11-55%, and 11-18% of the phenotypic variance, respectively. The QTL for ripening date (RD) and fruit development period (FDP) on LG4 was co-localized at the central part of LG4 (40 - 46 cM) and explained between 40-75% of the phenotypic variance. Haplotype analyses revealed SNP haplotypes and predictive SNP marker(s) associated with desired QTL alleles and the presence of multiple functional alleles with different effects for a single locus for RD and FDP.ConclusionsA multiple pedigree-linked families approach validated major QTLs for the three key phenological traits which were reported in previous studies across diverse materials, geographical distributions, and QTL mapping methods. Haplotype characterization of these genomic regions differentiates this study from the previous QTL studies. Our results will provide the peach breeder with the haplotypes for three BD QTLs and one RD/FDP QTL for the creation of predictive DNA-based molecular marker tests to select parents and/or seedlings that have desired QTL alleles and cull unwanted genotypes in early seedling stages.

scholarly journals Genetics of Germination and Seedling Traits under Drought Stress in a MAGIC Population of Maize

Plants ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 1786
Author(s):  
Soumeya Rida ◽  
Oula Maafi ◽  
Ana López-Malvar ◽  
Pedro Revilla ◽  
Meriem Riache ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Genome Wide Association Study ◽  
Genetic Regulation ◽  
Breeding Programs ◽  
Seedling Traits ◽  
Genome Wide ◽  
A Genome ◽  
Positive Correlations ◽  
Genomic Regions ◽  
Magic Population

Drought is one of the most detrimental abiotic stresses hampering seed germination, development, and productivity. Maize is more sensitive to drought than other cereals, especially at seedling stage. Our objective was to study genetic regulation of drought tolerance at germination and during seedling growth in maize. We evaluated 420 RIL with their parents from a multi-parent advanced generation inter-cross (MAGIC) population with PEG-induced drought at germination and seedling establishment. A genome-wide association study (GWAS) was carried out to identify genomic regions associated with drought tolerance. GWAS identified 28 and 16 SNPs significantly associated with germination and seedling traits under stress and well-watered conditions, respectively. Among the SNPs detected, two SNPs had significant associations with several traits with high positive correlations, suggesting a pleiotropic genetic control. Other SNPs were located in regions that harbored major QTLs in previous studies, and co-located with QTLs for cold tolerance previously published for this MAGIC population. The genomic regions comprised several candidate genes related to stresses and plant development. These included numerous drought-responsive genes and transcription factors implicated in germination, seedling traits, and drought tolerance. The current analyses provide information and tools for subsequent studies and breeding programs for improving drought tolerance.

scholarly journals Characterization of the Common japonica-Originated Genomic Regions in the High Yielding Varieties Developed from Inter-Subspecific Crosses in Rice (Oryza sativa L.)

2020 ◽  
Author(s):  
Jeonghwan Seo ◽  
So-Myeong Lee ◽  
Jae-Hyuk Han ◽  
Na-Hyun Shin ◽  
Yoon Kyung Lee ◽  
...  
Keyword(s):  
Molecular Breeding ◽  
Snp Markers ◽  
Yield Potential ◽  
Breeding Programs ◽  
Wx Gene ◽  
High Yielding Varieties ◽  
Indica And Japonica Subspecies ◽  
Genomic Regions ◽  
Further Development

The inter-subspecific crossing between indica and japonica subspecies in rice have been utilized to improve yield potential in temperate rice. In this study, a comparative study of the genomic regions in the eight high yielding varieties (HYVs) was conducted with those of the four non-HYV varieties. NGS mapping on the Nipponbare reference genome identified a total of 14 common genomic regions of japonica-originated alleles. Interestingly, the HYVs shared the japonica-originated genomic regions on the nine chromosomes, although they were developed from different breeding programs. A panel of 94 varieties was classified into four varietal groups with the 39 SNP markers from 39 genes residing the japonica-originated genomic regions and 16 additional trait-specific SNPs. As expected, the japonica originated genomic regions were present only in JAP and HYV groups with exceptions for Chr4-1 and Chr4-2. The Wx gene located within Chr6-1 was present in HYV and JAP variety groups, while the yield-related genes were conserved as indica alleles in HYVs. The japonica-originated genomic regions and alleles shared by HYVs can be employed in molecular breeding programs for further development of HYVs in rice.

Relationships of Resistance to Fusarium Ear Rot and Fumonisin Contamination with Agronomic Performance of Maize

Crop Science ◽  
2007 ◽  
Vol 47 (5) ◽  
pp. 1770-1778 ◽  
Author(s):  
Leilani A. Robertson-Hoyt ◽  
Craig E. Kleinschmidt ◽  
Don G. White ◽  
Gary A. Payne ◽  
Chris M. Maragos ◽  
...  
Keyword(s):  
Agronomic Performance ◽  
Fusarium Ear Rot ◽  
Ear Rot

Susceptibility of Inbred Lines of Corn to Fusarium Ear Rot 1

1949 ◽  
Vol 41 (8) ◽  
pp. 347-348 ◽  
Author(s):  
Francis L. Smith ◽  
Catharine Becker Madsen
Keyword(s):  
Inbred Lines ◽  
Fusarium Ear Rot ◽  
Ear Rot

Place of Wood Specific Gravity in the Development of Advanced-Generation Seed Orchards and Breeding Programs

1982 ◽  
Vol 6 (3) ◽  
pp. 177-180
Author(s):  
J. B. Jett ◽  
J. T. Talbert
Keyword(s):  
Specific Gravity ◽  
Loblolly Pine ◽  
Second Generation ◽  
Improvement Program ◽  
Breeding Programs ◽  
The North ◽  
Wood Specific Gravity ◽  
High Heritability ◽  
Pinus Taeda L ◽  
Advanced Generation

Abstract Data from thinnings of 11 genetic tests with an average age of 10 years and from 364 eight-year-old second-generation selections were analyzed to provide an estimate of gain from one cycle of selection for wood specific gravity. Utilizing mid-parent, mature, wood specific gravities and progeny juvenile wood specific gravities, coefficients of genetic prediction, CGP = 0.55 and 0.41, were calculated for the genetic test thinning sample and second-generation selection sample. Expressed as a percentage of the mean, gain from selection was calculated to be 2.6 percent. A strategy was also developed to include wood specific gravity in the North Carolina State Cooperative's second-generation loblolly pine (Pinus taeda L.) improvement program. High heritability figures indicate little need to develop extensive family information for wood specific gravity in advanced-generation breeding programs.

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