First Report of Pythium irregulare on Lentils in the United States

In late June and early July 2002, stunted, chlorotic, and partially defoliated lentils (Lens culinaris Medik.) were observed throughout the lentil-growing areas of eastern Washington. These symptoms were investigated in two fields near Garfield, WA and one field near Genesee, ID. Cv. Mason was more affected than cv. Brewer. Roots were dry and brittle with black discoloration in some cases. Isolates of Fusarium oxysporum and F. solani were obtained from washed roots plated on water agar, but they were nonpathogenic in greenhouse testing in pasteurized field soil and peat-based growing mixes. On 21 April 2003, volunteer lentils growing in the same fields showed symptoms of root rot, and Pythium oospores were observed in the roots. Pythium spp. were isolated by using a selective medium (2). Oospores were aplerotic, intercalary, 12.6 to 21 μm long × 11.2 to 18.2 μm wide, mostly smooth, and often formed in chains. Isolates resembled P. paroecandrum Drechs. and P. irregulare Buisman on the basis of morphological characters (3), but DNA sequences of the internal transcribed spacer region were closer to P. irregulare on the basis of a comparison with a worldwide database of Pythium sequences (C. A. Lévesque, personal communication). Isolates were deposited with the USDA-ARS Western Regional Plant Introduction Station, Pullman, WA. Four hyphal-tip isolates were tested in the greenhouse with inoculum grown in autoclaved sandy loam amended with 1% ground rolled oats. Experiments were performed twice in Thatuna silt loam, first in pasteurized and then in nonpasteurized soil. Inoculum was added to the soil at 500 CFU/g, and seeds were planted on the same day. Each isolate was tested on cvs. Brewer and Mason, with five replicates per treatment. Plants were grown in 4- × 20.5-cm plastic tubes (two plants per tube) for 1 month at 16 to 22°C and supplemented with 14 h of light per day. P. irregulare was reisolated from infected roots in both experiments. Damping-off, stunting, chlorosis, and root rot were observed in the Pythium-inoculated treatments, which corresponded to symptoms observed in the field in 2002. In pasteurized soil, only one isolate reduced the whole, dry, plant weight of Brewer, but the other three isolates reduced the dry weight of Mason. All isolates reduced the root dry weight of Mason in natural soil, but only two isolates reduced the root dry weight of Brewer. To our knowledge, Pythium spp., but not P. irregulare, have been reported previously from lentils (1). P. irregulare also causes root rot on winter wheat, which is rotated with lentils, and this pathogen likely causes yield reduction in both crops. References: (1) D. F. Farr et al. Fungi on Plants and Plant Products in the United States. The American Phytopathological Society, St. Paul, MN, 1989. (2) S. M. Mircetich and J. M. Kraft. Mycopathol. Mycol. Appl. 50:151, 1973. (3) A. J. van der Plaats-Niterink. Stud. Mycol. 21:1, 1981.

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First Report of Fusarium proliferatum Causing Root Rot on Soybean (Glycine max) in the United States

Plant Disease ◽

10.1094/pdis-04-11-0346 ◽

2011 ◽

Vol 95 (10) ◽

pp. 1316-1316 ◽

Cited By ~ 18

Author(s):

M. M. Díaz Arias ◽

G. P. Munkvold ◽

L. F. Leandro

Keyword(s):

United States ◽

Root Rot ◽

Morphological Characteristics ◽

Dry Weight ◽

The United States ◽

Growth Stages ◽

Species Identity ◽

First Report ◽

Soybean Roots ◽

Soybean Diseases

Fusarium spp. are widespread soilborne pathogens that cause important soybean diseases such as damping-off, root rot, Fusarium wilt, and sudden death syndrome. At least 12 species of Fusarium, including F. proliferatum, have been associated with soybean roots, but their relative aggressiveness as root rot pathogens is not known and pathogenicity has not been established for all reported species (2). In collaboration with 12 Iowa State University extension specialists, soybean roots were arbitrarily sampled from three fields in each of 98 Iowa counties from 2007 to 2009. Ten plants were collected from each field at V2-V3 and R3-R4 growth stages (2). Typical symptoms of Fusarium root rot (2) were observed. Symptomatic and asymptomatic root pieces were superficially sterilized in 0.5% NaOCl for 2 min, rinsed three times in sterile distilled water, and placed onto a Fusarium selective medium. Fusarium colonies were transferred to carnation leaf agar (CLA) and potato dextrose agar and later identified to species based on cultural and morphological characteristics. Of 1,230 Fusarium isolates identified, 50 were recognized as F. proliferatum based on morphological characteristics (3). F. proliferatum isolates produced abundant, aerial, white mycelium and a violet-to-dark purple pigmentation characteristic of Fusarium section Liseola. On CLA, microconidia were abundant, single celled, oval, and in chains on monophialides and polyphialides (3). Species identity was confirmed for two isolates by sequencing of the elongation factor (EF1-α) gene using the ef1 and ef2 primers (1). Identities of the resulting sequences (~680 bp) were confirmed by BLAST analysis and the FUSARIUM-ID database. Analysis resulted in a 99% match for five accessions of F. proliferatum (e.g., FD01389 and FD01858). To complete Koch's postulates, four F. proliferatum isolates were tested for pathogenicity on soybean in a greenhouse. Soybean seeds of cv. AG2306 were planted in cones (150 ml) in autoclaved soil infested with each isolate; Fusarium inoculum was applied by mixing an infested cornmeal/sand mix with soil prior to planting (4). Noninoculated control plants were grown in autoclaved soil amended with a sterile cornmeal/sand mix. Soil temperature was maintained at 18 ± 1°C by placing cones in water baths. The experiment was a completely randomized design with five replicates (single plant in a cone) per isolate and was repeated three times. Root rot severity (visually scored on a percentage scale), shoot dry weight, and root dry weight were assessed at the V3 soybean growth stage. All F. proliferatum isolates tested were pathogenic. Plants inoculated with these isolates were significantly different from the control plants in root rot severity (P = 0.001) and shoot (P = 0.023) and root (P = 0.013) dry weight. Infected plants showed dark brown lesions in the root system as well as decay of the entire taproot. F. proliferatum was reisolated from symptomatic root tissue of infected plants but not from similar tissues of control plants. To our knowledge, this is the first report of F. proliferatum causing root rot on soybean in the United States. References: (1) D. M. Geiser et al. Eur. J. Plant Pathol. 110:473, 2004. (2) G. L. Hartman et al. Compendium of Soybean Diseases. 4th ed. The American Phytopathologic Society, St. Paul, MN, 1999. (3) J. F. Leslie and B. A. Summerell. The Fusarium Laboratory Manual. Blackwell Publishing, Oxford, UK, 2006. (4) G. P. Munkvold and J. K. O'Mara. Plant Dis. 86:143, 2002.

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Response of soybean cultivars to root rot caused by Fusarium species

Canadian Journal of Plant Science ◽

10.4141/cjps09133 ◽

2010 ◽

Vol 90 (5) ◽

pp. 767-776 ◽

Cited By ~ 34

Author(s):

J X Zhang ◽

A G Xue ◽

H J Zhang ◽

A E Nagasawa ◽

J T Tambong

Keyword(s):

United States ◽

Root Rot ◽

Fusarium Species ◽

Seedling Emergence ◽

Dry Weight ◽

The United States ◽

Pathogenic Species ◽

Fusarium Root Rot ◽

Soybean Cultivars ◽

Soybean Roots

Fusarium root rot complex is a major soybean disease in Canada and the United States. Since 2006, four Fusarium species, F. oxysporum Schlechtendahl emend. Snyder & Hansen, F. graminearum Schwabe, F. avenaceum (Corda: Fr.) Sacc., and F. tricinctum (Corda) Sacc., have frequently been isolated from soybean roots in eastern Ontario, Canada. The objective of the current study was to screen 57 soybean cultivars that are commercially available in Canada for resistance to these four Fusarium root rot pathogens under greenhouse conditions. Based on root rot severity and reductions in seedling emergence, plant height and root dry weight, F. avenaceum was the most pathogenic species, followed by F. graminearum. The pathogenicity of F. oxysporum on soybean cultivars was not significantly different from that of F. tricinctum, but was significantly lower than that of F. graminearum. In replicated experiments, six, nine, eleven and seven cultivars were consistently rated as the most resistant to F. avenaceum, F. graminearum, F. oxysporum and F. tricinctum, respectively. Cultivar Maple Amber was resistant to all four Fusarium species based on root rot severity, while cultivar Altona was resistant to F. avenaceum, F. oxysporum and F. tricinctum. Four cultivars, 9004, AC Harmony, Lanark and Maple Arrow, each showed resistance to two different Fusarium species.Key words: Soybean, Glycine max, Fusarium root rot, Fusarium oxysporum, F. graminearum, F. avenaceum, F. tricinctum

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First Report of Root Rot Caused by Fusarium solani on Benincasa hispida in the United States

Plant Disease ◽

10.1094/pdis-06-11-0494 ◽

2012 ◽

Vol 96 (2) ◽

pp. 294-294 ◽

Cited By ~ 2

Author(s):

P. Ji ◽

J. Yin ◽

K. L. Jackson

Keyword(s):

United States ◽

Dna Sequences ◽

Root Rot ◽

Morphological Characteristics ◽

The United States ◽

First Report ◽

Benincasa Hispida ◽

Field Samples ◽

Vegetable Farm ◽

Wax Gourd

Root rot was observed on wax gourd (Benincasa hispida (Thunb.) Cogn.) cv. Black Giant in August 2010 in a commercial vegetable farm in southern Georgia. Approximately 5% of the plants were affected and infected roots turned light to dark brown with partial or entire roots affected and the lower leaves became wilted. Symptomatic roots from six plants were surface sterilized with 0.6% sodium hypochlorite and plated on potato dextrose agar (PDA) medium. Pure cultures had white mycelia and spore masses and were obtained from all six plants by subculturing hyphal tips onto PDA. One- to two-celled, oval- to kidney-shaped microconidia and cylindrical macroconidia with two or three cells plus apical and basal cell were produced, which averaged 12.5 × 4 μm and 28 × 4.5 μm, respectively. Microconidia were abundant and macroconidia were sparse on PDA. Single-spore isolates were obtained and identified as a Fusarium sp. by PCR analysis with primers ITS-Fu-f and ITS-Fu-r (1). Genomic DNA of two isolates obtained from different plants was extracted and a portion of the translation elongation factor 1-α (TEF) gene of the isolates was amplified and sequenced (3). When compared with sequences available in the GenBank database, DNA sequences of the two isolates (GenBank Accession No. JF928376) shared 100% sequence identity with F. solani strain FRC S1734 (GenBank Accession No. DQ247527). The fungus was identified as F. solani (Mart.) Sacc. based on molecular analysis and morphological characteristics (2). Oat grains were separately infected with two isolates, BG2a and BG6, and used to inoculate healthy, 3-week-old wax gourd seedlings (cv. Black Giant) under greenhouse conditions (14-h photoperiod, 24 to 30°C). Each seedling was grown in a 10-cm pot containing a commercial potting mix, and five healthy plants were inoculated with each isolate by placing 15 infected oat grains around each plant at a depth of 5 cm in the soil. Five plants treated with noninfected oat grains served as controls. Symptoms identical to those on field samples developed on all inoculated plants 3 weeks after inoculation but not on the control plants. F. solani was reisolated from inoculated symptomatic plants and the identity was confirmed, which completed Koch's postulates. The experiment was repeated one more time under similar conditions. To our knowledge, this is the first report of root rot caused by F. solani on wax gourd in the United States. Wax gourd is an important specialty crop in the southeastern United States and the occurrence of this disease needs to be taken into account in wax gourd production. References: (1) K. A. Abd-Elsalam et al. Afr. J. Biotechnol. 2:82, 2003. (2) C. Booth. Fusarium Laboratory Guide to the Identification of the Major Species. CMI, Kew, England, 1977. (3) D. M. Geiser et al. Eur. J. Plant Pathol. 110:473, 2004.

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First Report of Pythium aphanidermatum Crown and Root Rot of Industrial Hemp in the United States

Plant Disease ◽

10.1094/pdis-09-16-1249-pdn ◽

2017 ◽

Vol 101 (6) ◽

pp. 1038 ◽

Cited By ~ 7

Author(s):

J. Beckerman ◽

H. Nisonson ◽

N. Albright ◽

T. Creswell

Keyword(s):

United States ◽

Root Rot ◽

The United States ◽

Pythium Aphanidermatum ◽

First Report ◽

Crown And Root Rot ◽

Industrial Hemp

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Leaf Anthracnose, a New Disease of Swallow-Worts Caused by Colletotrichum lineola from Russia

Plant Disease ◽

10.1094/pdis-04-11-0318 ◽

2011 ◽

Vol 95 (12) ◽

pp. 1586-1586 ◽

Cited By ~ 6

Author(s):

D. Berner ◽

C. Cavin ◽

Z. Mukhina ◽

D. Kassanelly

Keyword(s):

United States ◽

Biological Control ◽

Dna Sequences ◽

Aqueous Suspension ◽

Science Research ◽

The United States ◽

Research Unit ◽

Leaf Spots ◽

Pure Cultures ◽

Appressoria Formation

Black swallow-wort, Vincetoxicum nigrum (L.) Moench (= Cynanchum louiseae Kartesz & Gandhi), and pale swallow-wort, V. rossicum (Kleopow) Borhidi (= Cynanchum rossicum (Kleopow) Borhidi), are invasive plants belonging to the family Apocynaceae and are the targets of biological control efforts to control their spread in the United States. In 2010, a disease on a related species, V. scandens Sommier & Levier, was observed in the Krasnodar area of Russia. Disease symptoms were many small, dark red-to-purple leaf spots, approximately 2 to 5 mm in diameter, with white centers. Leaf spots were found on the upper leaf surface. Leaf tips and margins of leaves bearing many of these spots were necrotic. Symptomatic leaves were collected and sent to the BSL-3 containment facility at the Foreign Disease-Weed Science Research Unit (FDWSRU) of the USDA, ARS in Frederick MD. Surface-disinfested symptomatic leaves were incubated at 20 to 25°C in sterile moist chambers. After several days, acervuli and brown setae were observed inside the leaf spots. Pure cultures, designated FDWSRU 10-002, were obtained by transferring spore masses with sterile glass needles onto 20% V8 juice agar. Seeds of V. scandens, collected in Russia, were placed in a freezer at –20°C for 6 weeks and then germinated in sterile petri plates on moist filter paper. The seedlings were then transplanted and grown in a 20°C greenhouse under 12 h of light. Koch's postulates were fulfilled as follows: 2-month-old plants each of V. scandens, V. nigrum, and V. rossicum were inoculated with spores from 2-week-old cultures of isolate 10-002. Plants were inoculated by spraying an aqueous suspension of 106 spores per ml onto each plant until all leaves were wet. Plants were placed in 20 to 24°C dew chambers for 18 h and then placed in a 20°C greenhouse. Two weeks later, diseased leaves with the same symptoms observed in the field were harvested from each species, and the fungus was reisolated from seven of seven inoculated V. scandens plants, one of two V. nigrum plants, and four of four V. rossicum plants. Measurements of fungus fruiting structures were taken from cultures grown on synthetic nutrient-poor agar (SNA) (1). Conidiophores were brown, septate, and branched. Conidia were one-celled, hyaline, smooth walled, ovoid to oblong, falcate, and 20.1 to 26.2 × 1.7 to 3.6 μm (mean ± s.d. = 23.5 ± 1.3 × 2.6 ± 0.4 μm). Lengths of the conidia conformed to the description of Colletotrichum lineola Corda (1), but the conidia were slightly narrower than described. To induce appressoria formation, approximately 104 conidia were placed on sterile dialysis membranes on top of SNA in petri dishes that were wrapped in foil and incubated at 24°C for 24 h. After this time, appressoria were observed with a microscope at ×400 magnification. The appressoria were dark brown, smooth walled, ellipsoidal, and 5.5 to 25.5 × 3.6 to 12.1 μm (mean ± s.d. = 13.4 ± 4.0 × 7.3 ± 2.1 μm), which conformed to the description of appressoria of C. lineola Corda (1). DNA sequences of ITS1, 5.8S, and ITS2 were submitted to GenBank (No. HQ731491), and after BLAST analysis, aligned 100% to 15 previously identified isolates of C. lineola in GenBank. Voucher specimens of the fungus have been deposited in the U.S. National Fungus Collection and were designated as BPI 881105 and BPI 881106. Host range and efficacy tests are planned to determine the suitability of C. lineola for biological control of swallow-worts in the United States. Reference: (1) U. Damm et al. Fungal Divers. 39:45, 2009.

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Chloroplast Noncoding DNA Sequences Reveal Genetic Distinction and Diversity between Wild and Cultivated Prunus yedoensis

Journal of the American Society for Horticultural Science ◽

10.21273/jashs.142.6.434 ◽

2017 ◽

Vol 142 (6) ◽

pp. 434-443

Author(s):

Eun Ju Cheong ◽

Myong-Suk Cho ◽

Seung-Chul Kim ◽

Chan-Soo Kim

Keyword(s):

United States ◽

Dna Sequences ◽

The United States ◽

Jeju Island ◽

Noncoding Dna ◽

Noncoding Regions ◽

Naturally Occurring ◽

Prunus Yedoensis ◽

History Of ◽

Ornamental Trees

Cultivated flowering cherries (Prunus subgenus Cerasus), which are one of the most popular ornamental trees around the world, have been developed through artificial hybridizations among wild flowering cherries. Among the hundreds of cultivars of flowering cherries, Prunus ×yedoensis ‘Somei-yoshino’ is the most common and widespread. However, its origin and genetic relationship to wild P. yedoensis, naturally occurring on Jeju Island, South Korea, have long been debated. We used sequence polymorphisms in eight chloroplast DNA (cpDNA) noncoding regions to distinguish wild and cultivated flowering cherries among 104 individuals (55 accessions). We were able to distinguish two distinct groups, one corresponding to wild P. yedoensis collections from Jeju Island and the other collections of cultivated P. ×yedoensis from Korea, Japan, and the United States. The chlorotype diversity of wild P. yedoensis in Jeju Island and cultivated P. ×yedoensis collections in the United States was quite high, suggesting multiple natural hybrid origins and long history of cultivation from different original sources, respectively.

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The Effect of Biochars and Endophytic Bacteria on Growth and Root Rot Disease Incidence of Fusarium Infested Narrow-Leafed Lupin (Lupinus angustifolius L.)

Microorganisms ◽

10.3390/microorganisms8040496 ◽

2020 ◽

Vol 8 (4) ◽

pp. 496

Author(s):

Dilfuza Egamberdieva ◽

Vyacheslav Shurigin ◽

Burak Alaylar ◽

Hua Ma ◽

Marina E. H. Müller ◽

...

Keyword(s):

Plant Growth ◽

Root Rot ◽

Endophytic Bacteria ◽

Growth Parameters ◽

Disease Incidence ◽

Dry Weight ◽

Microbial Interactions ◽

Root Rot Disease ◽

Root Dry Weight ◽

Rot Disease

The effects of biochar on plant growth vary depending on the applied biochar type, study site environmental conditions, microbial species, and plant–microbial interactions. The objectives of the present study were therefore to assess 1) the response of growth parameters of lupin and root disease incidence to the application of three biochar types in a loamy sandy soil, and 2) the role of endophytic bacteria in biological control of root rot disease incidence in lupin after the amendment of soil with different biochar types. As biochar types we tested (i) hydrochar (HTC) from maize silage, (ii) pyrolysis char from maize (MBC), and (iii) pyrolysis char from wood (WBC) at three different concentrations (1%, 2%, and 3% of char as soil amendments). There were no significant effects in lupin shoot and root growth in soils amended with WBC at any of the concentrations. MBC did not affect plant growth except for root dry weight at 2% MBC. HTC char at 2% concentration, significantly increased the root dry weight of lupin by 54–75%, and shoot dry weight by 21–25%. Lupin plants grown in soil amended with 2% and 3% WBC and MBC chars showed 40–50% and 10–20% disease symptoms, respectively. Plants grown in soil without biochar and with HTC char were healthy, and no disease incidence occurred. Pseudomonas putida L2 and Stenotrophomonas pavanii L8 isolates demonstrated a disease reduction compared to un-inoculated plants under MBC and WBC amended soil that was infested with Fusarium solani.

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First Report of Stem Blight Caused by Calonectria colhounii (Anamorph Cylindrocladium colhounii) on Greenhouse-Grown Blueberries in the United States

Plant Disease ◽

10.1094/pdis-02-11-0117 ◽

2011 ◽

Vol 95 (9) ◽

pp. 1187-1187

Author(s):

J. J. Sadowsky ◽

T. D. Miles ◽

A. M. C. Schilder

Keyword(s):

United States ◽

North Carolina ◽

Root Rot ◽

The United States ◽

Vaccinium Corymbosum ◽

Conidial Suspension ◽

Centraalbureau Voor ◽

First Report ◽

Stem Lesions ◽

Β Tubulin

Necrotic stems and leaves were observed on 2- to 4-month-old, rooted microshoot plants (Vaccinium corymbosum L. ‘Liberty’ and ‘Bluecrop’, V. angustifolium Aiton ‘Putte’, and V. corymbosum × V. angustifolium ‘Polaris’) in a Michigan greenhouse in 2008 and 2009. As the disease progressed, leaves fell off and 80 to 100% of the plants died in some cases. Root rot symptoms were also observed. A fungus was isolated from stem lesions. On potato dextrose agar (PDA), cultures first appeared light tan to orange, then rusty brown and zonate with irregular margins. Chains of orange-brown chlamydospores were abundant in the medium. Macroconidiophores were penicillately branched and had a stipe extension of 220 to 275 × 2.5 μm with a narrowly clavate vesicle, 3 to 4 μm wide at the tip. Conidia were hyaline and cylindrical with rounded ends, (1-)3-septate, 48 to 73 × 5 to 7 (average 60 × 5.5) μm and were held together in parallel clusters. Perithecia were globose to subglobose, yellow, 290 to 320 μm high, and 255 to 295 μm in diameter. Ascospores were hyaline, 2- to 3-septate, guttulate, fusoid with rounded ends, slightly curved, and 30 to 88 × 5 to 7.5 (average 57 × 5.3) μm. On the basis of morphology, the fungus was identified as Calonectria colhounii Peerally (anamorph Cylindrocladium colhounii Peerally) (1,2). The internal transcribed spacer region (ITS1 and ITS2) of the ribosomal DNA and the β-tubulin gene were sequenced (GenBank Accession Nos. HQ909028 and JF826867, respectively) and compared with existing sequences using BLASTn. The ITS sequence shared 99% maximum identity with that of Ca. colhounii CBS 293.79 (GQ280565) from Java, Indonesia, and the β-tubulin sequence shared 97% maximum identity with that of Ca. colhounii CBS 114036 (DQ190560) isolated from leaf spots on Rhododendron sp. in North Carolina. The isolate was submitted to the Centraalbureau voor Schimmelcultures in the Netherlands (CBS 129628). To confirm pathogenicity, 5 ml of a conidial suspension (1 × 105/ml) were applied as a foliar spray or soil drench to four healthy ‘Bluecrop’ plants each in 10-cm plastic pots. Two water-sprayed and two water-drenched plants served as controls. Plants were misted intermittently for 2 days after inoculation. After 7 days at 25 ± 3°C, drench-inoculated plants developed necrotic, sporulating stem lesions at the soil line, while spray-inoculated plants showed reddish brown leaf and stem lesions. At 28 days, three drench-inoculated and one spray-inoculated plant had died, while others showed stem necrosis and wilting. No symptoms were observed on control plants. Fungal colonies reisolated from surface-disinfested symptomatic stem, leaf, and root segments appeared identical to the original isolate. Cy. colhounii was reported to cause a leaf spot on blueberry plants in nurseries in China (3), while Ca. crotalariae (Loos) D.K. Bell & Sobers (= Ca. ilicicola Boedijn & Reitsma) causes stem and root rot of blueberries in North Carolina (4). To our knowledge, this is the first report of Ca. colhounii causing a disease of blueberry in Michigan or the United States. Because of its destructive potential, this pathogen may pose a significant threat in blueberry nurseries. References: (1) P. W. Crous. Taxonomy and Pathology of Cylindrocladium (Calonectria) and Allied Genera. The American Phytopathological Society, St. Paul, MN, 2002. (2) L. Lombard et al. Stud. Mycol. 66:31, 2010. (3) Y. S. Luan et al. Plant Dis. 90:1553, 2006. (4) R. D. Milholland. Phytopathology 64:831, 1974.

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Phomopsis Stem Canker: A Reemerging Threat to Sunflower (Helianthus annuus) in the United States

Phytopathology ◽

10.1094/phyto-11-14-0336-fi ◽

2015 ◽

Vol 105 (7) ◽

pp. 990-997 ◽

Cited By ~ 28

Author(s):

Febina M. Mathew ◽

Kholoud M. Alananbeh ◽

James G. Jordahl ◽

Scott M. Meyer ◽

Lisa A. Castlebury ◽

...

Keyword(s):

United States ◽

Helianthus Annuus ◽

Great Plains ◽

Phylogenetic Analyses ◽

Elongation Factor ◽

Stem Canker ◽

The United States ◽

Northern Great Plains ◽

Type Specimens ◽

Internal Transcribed Spacer Region

Phomopsis stem canker causes yield reductions on sunflower (Helianthus annuus L.) on several continents, including Australia, Europe, and North America. In the United States, Phomopsis stem canker incidence has increased 16-fold in the Northern Great Plains between 2001 and 2012. Although Diaporthe helianthi was assumed to be the sole causal agent in the United States, a newly described species, D. gulyae, was found to be the primary cause of Phomopsis stem canker in Australia. To determine the identity of Diaporthe spp. causing Phomopsis stem canker in the Northern Great Plains, 275 infected stems were collected between 2010 and 2012. Phylogenetic analyses of sequences of the ribosomal DNA internal transcribed spacer region, elongation factor subunit 1-α, and actin gene regions of representative isolates, in comparison with those of type specimens, confirmed two species (D. helianthi and D. gulyae) in the United States. Differences in aggressiveness between the two species were determined using the stem-wound method in the greenhouse; overall, D. helianthi and D. gulyae did not vary significantly (P ≤ 0.05) in their aggressiveness at 10 and 14 days after inoculation. These findings indicate that both Diaporthe spp. have emerged as sunflower pathogens in the United States, and have implications on the management of this disease.

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Genomic Analysis of the Emergence of Vancomycin-Resistant Staphylococcus aureus

mBio ◽

10.1128/mbio.00170-12 ◽

2012 ◽

Vol 3 (4) ◽

Cited By ~ 14

Author(s):

Scott D. Kobayashi ◽

James M. Musser ◽

Frank R. DeLeo

Keyword(s):

United States ◽

Staphylococcus Aureus ◽

Dna Sequences ◽

Clonal Complex ◽

Infectious Agent ◽

The United States ◽

Vancomycin Resistance ◽

Genetic Characteristics ◽

Content Type ◽

Vancomycin Resistant

ABSTRACT Staphylococcus aureus is a human commensal bacterium and a prominent cause of infections globally. The high incidence of S. aureus infections is compounded by the ability of the microbe to readily acquire resistance to antibiotics. In the United States, methicillin-resistant S. aureus (MRSA) is a leading cause of morbidity and mortality by a single infectious agent. Therapeutic options for severe MRSA infections are limited to a few antibiotics to which the organism is typically susceptible, including vancomycin. Acquisition of high-level vancomycin resistance by MRSA is a major concern, but to date, there have been only 12 vancomycin-resistant S. aureus (VRSA) isolates reported in the United States and all belong to a phylogenetic lineage known as clonal complex 5. To gain enhanced understanding of the genetic characteristics conducive to the acquisition of vancomycin resistance by S. aureus , V. N. Kos et al. performed whole-genome sequencing of all 12 VRSA isolates and compared the DNA sequences to the genomes of other S. aureus strains. The findings provide new information about the evolutionary history of VRSA and identify genetic features that may bear on the relationship between S. aureus clonal complex 5 strains and the acquisition of vancomycin resistance genes from enterococci.

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