scholarly journals Case Study of an Epidemiological Approach Dissecting Historical Soybean Sclerotinia Stem Rot Observations and Identifying Environmental Predictors of Epidemics and Yield Loss

2018 ◽  
Vol 108 (4) ◽  
pp. 469-478 ◽  
Author(s):  
Mamadou L. Fall ◽  
John F. Boyse ◽  
Dechun Wang ◽  
Jaime F. Willbur ◽  
Damon L. Smith ◽  
...  
Keyword(s):  
Disease Severity ◽  
Yield Loss ◽  
Historical Data ◽  
Severity Index ◽  
Stem Rot ◽  
Total Precipitation ◽  
Disease Severity Index ◽  
Sclerotinia Stem Rot ◽  
Environmental Predictors ◽  
Epidemiological Approach

Sclerotinia sclerotiorum is a significant threat to soybean production worldwide. In this study, an epidemiological approach was used to examine 11 years of historical data from a soybean management performance trial in order to advance our understanding of Sclerotinia stem rot (SSR) development and to identify environmental predictors of SSR epidemics and associated yield losses. Recursive partitioning analysis suggested that average air temperature and total precipitation in July were the most significant variables associated with disease severity. High levels of SSR disease severity index were observed when the average temperature in July was below 19.5°C and total precipitation in July was moderate, between 20 and 108.5 mm. A biphasic sigmoidal curve accurately described the relationship between SSR disease severity index (DSI) and yield, with a DSI threshold of 22, below which minimal yield loss was observed. A 10% increase in the DSI, from 22.0 to 24.2, led to an 11% decrease in yield, from 3,308.14 to 2,951.29 kg/ha. Also, a yield threshold (3,353 kg/ha) that was higher than the annual U.S. average soybean yield (3,039.7 kg/ha) was suggested as an expected yield under low or no SSR pressure in the U.S. Midwest. These thresholds can allow soybean stakeholders to assess the value of disease control and establish an SSR baseline for cost-effective management to protect yields. Because S. sclerotiorum has more than 400 plant host species, and because having quantitative information concerning crop losses is crucial for decision making, this study shows the usefulness of historical data on SSR and, hence, can serve as a model in other SSR pathosystems (canola, dry bean, potato, pea, and so on).

Meta-Analytic and Economic Approaches for Evaluation of Pesticide Impact on Sclerotinia Stem Rot Control and Soybean Yield in the North Central United States

2019 ◽  
Vol 109 (7) ◽  
pp. 1157-1170 ◽  
Author(s):  
Jaime F. Willbur ◽  
Paul D. Mitchell ◽  
Mamadou L. Fall ◽  
Adam M. Byrne ◽  
Scott A. Chapman ◽  
...  
Keyword(s):  
Disease Severity ◽  
Yield Loss ◽  
Severity Index ◽  
Stem Rot ◽  
Sclerotinia Stem Rot ◽  
Soybean Yield ◽  
The North ◽  
Central United States ◽  
Meta Analyses ◽  
The Impact

As complete host resistance in soybean has not been achieved, Sclerotinia stem rot (SSR) caused by Sclerotinia sclerotiorum continues to be of major economic concern for farmers. Thus, chemical control remains a prevalent disease management strategy. Pesticide evaluations were conducted in Illinois, Iowa, Michigan, Minnesota, New Jersey, and Wisconsin from 2009 to 2016, for a total of 25 site-years (n = 2,057 plot-level data points). These studies were used in network meta-analyses to evaluate the impact of 10 popular pesticide active ingredients, and seven common application timings on SSR control and yield benefit, compared with not treating with a pesticide. Boscalid and picoxystrobin frequently offered the best reductions in disease severity and best yield benefit (P < 0.0001). Pesticide applications (one- or two-spray programs) made during the bloom period provided significant reductions in disease severity index (DIX) (P < 0.0001) and led to significant yield benefits (P = 0.0009). Data from these studies were also used in nonlinear regression analyses to determine the effect of DIX on soybean yield. A three-parameter logistic model was found to best describe soybean yield loss (pseudo-R2 = 0.309). In modern soybean cultivars, yield loss due to SSR does not occur until 20 to 25% DIX, and considerable yield loss (−697 kg ha−1 or −10 bu acre−1) is observed at 68% DIX. Further analyses identified several pesticides and programs that resulted in greater than 60% probability for return on investment under high disease levels.

Effect of crop rotation and soil amendments on Sclerotinia stem rot on soybean in two soils

2007 ◽  
Vol 87 (3) ◽  
pp. 605-614 ◽  
Author(s):  
G. Rousseau ◽  
S. Rioux ◽  
D. Dostaler
Keyword(s):  
Disease Severity ◽  
Crop Rotation ◽  
Redundancy Analysis ◽  
Sandy Loam ◽  
Soil Amendments ◽  
Severity Index ◽  
Stem Rot ◽  
Disease Severity Index ◽  
Clay Loam ◽  
Sclerotinia Stem Rot

The effect of 4-yr soybean rotations with corn (CCCS vs. CCSS vs. SSSS) and soil amendments (urban compost vs. mineral fertilizer) on Sclerotinia stem rot of soybean (disease severity index, apothecia number, sclerotia survival), caused by Sclerotinia sclerotiorum, was studied on two soils (clay loam and sandy loam) at Saint-Hyacinthe, in southwestern Québec, from 1999 to 2002. In 2002, the 3-yr-corn rotation had a significant effect on the disease severity index (DSI) at the clay loam site; DSI was greatly reduced by rotation (5.2%) compared with monoculture (44.3%). At the sandy loam site, an interaction between rotation and fertility amendments reduced DSI from 71.7% in the monoculture to 37.8% in the 3-yr-corn rotation amended with compost. Canonical redundancy analysis (RDA) of the DSI-apothecia matrix in 2002 confirmed the suppressiveness of the 3-yr-corn rotation and revealed a significant conducive effect on DSI of compost at the clay loam site. At the sandy loam site, RDA of the DSI-apothecia matrix confirmed suppressive interaction between corn-soybean rotations and compost amendment. Key words: Sclerotinia stem rot of soybean, crop rotation, urban compost, multiple regression, canonical redundancy analysis, permutations test

scholarly journals Greenhouse Cucumber Cultivars Differ in Susceptibility to Fusarium Root and Stem Rot

2004 ◽  
Vol 14 (2) ◽  
pp. 240-242 ◽  
Author(s):  
Steve Rose ◽  
Zamir K. Punja
Keyword(s):  
Fusarium Oxysporum ◽  
Disease Severity ◽  
Severity Index ◽  
Stem Rot ◽  
Disease Severity Index ◽  
Plant Mortality ◽  
Breeding Lines ◽  
The Third ◽  
Enhanced Resistance ◽  
Greenhouse Cucumber

Eighteen cucumber (Cucumis sativus L.) cultivars (long English type) were screened for their susceptibility to fusarium root and stem rot caused by Fusarium oxysporum Schlechtend.: Fr. f.sp. radicis-cucumerinum D.J. Vakalounakis using seedlings at the third true-leaf stage. Roots were trimmed and dipped into a spore suspension (105 spores/mL) of the pathogen and the plants were re-potted. A disease severity index (DSI) was used to assess disease responses 4 or 8 weeks later based on plant mortality and the height of surviving plants compared to the noninoculated controls. `Sienna', `Amazing' and `Dominica' were most susceptible to infection and the resulting DSI values were significantly (P ≤ 0.05) higher compared to noninoculated control plants. The cultivars `Korinda', `Euphoria' and `Aviance' displayed significantly lower DSI values which were not significantly different from noninoculated control plants. The remaining 12 cultivars displayed DSI values which were intermediate between the above two classes of responses. The results from this study indicate there is the potential to identify and develop cultivars and breeding lines of greenhouse cucumbers with enhanced resistance to fusarium root and stem rot.

Biochemical basis of genotypic and bio-agent induced stem rot resistance in groundnut

2017 ◽  
Vol 40 (04) ◽  
Author(s):  
Riddhi H. Rajyaguru ◽  
Thirumalaisamy P. P. ◽  
Kirankumar G. Patel ◽  
Jignasha T. Thumar
Keyword(s):  
Disease Severity ◽  
Polyphenol Oxidase ◽  
Severity Index ◽  
Stem Rot ◽  
Systemic Resistance ◽  
Defense Enzymes ◽  
Disease Severity Index ◽  
Biochemical Basis ◽  
Catalase Peroxidase ◽  
Resistant Genotypes

Stem rot (Sclerotium rolfsii Sacc.) resistance in groundnut genotypes was due to activities of defense enzymes such as, catalase, peroxidase and polyphenol oxidase. Bio-agent, Bacillus amyloliquefaciens isolated from groundnut rhizosphere enhances the activities of defense enzymes through salicylic acid induced systemic resistance. In resistant genotypes (NRCGCS-19 and NRCGCS-319) higher activities of defense enzymes were recorded constitutively while in susceptible genotypes it was increased after bio-agent treatment. The activities of pathogenesis related-proteins viz., polygalacturonase and chitinase were registered in plants inoculated with S. rolfsii. Enzymes, catalase, peroxidase, polyphenol oxidase and chitinase showed strong negative correlation with disease severity index. However, the activity of polygalacturonase was directly related to disease severity index and inversely related to activity of chitinase. Hence, to obtain required levels of crop protection against S. rolfsii one has to grow either resistant genotypes or bio-agent treated susceptible genotypes.

EVALUATION OF NONIONIC SURFACTANTS FOR CONTROL OF CLUBROOT OF CABBAGE USING BAREROOT AND PLUG TRANSPLANTS OF TWO CULTIVARS

HortScience ◽  
1992 ◽  
Vol 27 (6) ◽  
pp. 607b-607
Author(s):  
W. Tietjen ◽  
P.J. Nitzsche ◽  
W.P. Cowgill ◽  
M.H. Maletta ◽  
S.A. Johnston
Keyword(s):  
Brassica Oleracea ◽  
Disease Severity ◽  
Nonionic Surfactants ◽  
Plasmodiophora Brassicae ◽  
Severity Index ◽  
Effective Control ◽  
Disease Severity Index

`Market Prize' and `Bravo' cabbage (Brassica oleracea Var. capitata L.), transplanted as peat plug and bareroot plants into a field naturally infested with Plasmodiophora brassicae, Woronin, were treated immediately after planting with a liquid or a granular surfactant. APSA 80™, applied in transplant water, significantly reduced percent clubbing and disease severity index (DSI) compared to control treatments. Miller Soil Surfactant Granular™ did not significantly reduce percent clubbing or DSI. There was a significant effect of cultivar on percent clubbing and DSI. There was no significant effect of transplant type on percent clubbing or DSI. This year's study culminates five years of investigation of surfactants for clubroot control. Specific surfactants have proven to be an effective control of clubroot in cabbage. Chemical names used: nonylphenoxypolyethoxyethanol (APSA 80™); alpha-alkanoic-hydro omega-hydroxy poly (oxyethylene) (Miller Soil Surfactant Granular™).

scholarly journals Summer Heat and Low Soil Organic Matter Influence Severity of Hazelnut Cytospora Canker

2014 ◽  
Vol 104 (4) ◽  
pp. 387-395 ◽  
Author(s):  
Jay Ram Lamichhane ◽  
Alfredo Fabi ◽  
Leonardo Varvaro
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Disease Severity ◽  
Severity Index ◽  
Stress Factors ◽  
Disease Severity Index ◽  
Positive Correlation ◽  
Summer Heat ◽  
Production Areas ◽  
Cytospora Canker

Cytospora canker, caused by the fungus Cytospora corylicola, is present in hazelnut production areas worldwide. The disease is widespread throughout the main production areas of Italy. The causal agent is considered to be a secondary invader of damaged tissue that attacks mainly stressed plants. However, little is known of disease severity and stress factors that predispose plants to infection. In particular, the role of pedoclimatic factors was investigated. Direct survey indicated that disease severity varied across several study sites. Geostatistics showed a strong positive correlation between disease severity index and summer heat (r = 0.80 and 0.91 for July and August, respectively) and strong negative correlation between disease severity index and soil organic matter (r = –0.78). A moderate positive correlation between disease severity index and magnesium/potassium ratio (r = 0.58) and moderate negative correlations between disease severity index and total soil nitrogen (r = –0.53), thermal shock (r = –0.46), and rainfall (r = –0.53) were determined. No significant correlation between disease severity index and soil aluminum (r = –0.35), soil pH (r = –0.01), and plant age (r = –0.38) was found.

scholarly journals The relationship between SPAD chlorophyll and disease severity index in Ganoderma-infected oil palm seedlings

2019 ◽  
Vol 17 (3) ◽  
pp. 355-358 ◽  
Author(s):  
M.R.M. Rakib ◽  
A.H. Borhan ◽  
A.N. Jawahir
Keyword(s):  
Chlorophyll Content ◽  
Disease Severity ◽  
Oil Palm ◽  
Single Photon ◽  
Linear Trend ◽  
Severity Index ◽  
Quadratic Model ◽  
Wood Block ◽  
Disease Severity Index ◽  
The Relationship

Establishment of disease in oil palm seedlings through artificial inoculation of Ganoderma are widely used for studies of various aspects of plant pathology, including epidemiology, etiology, disease resistance, host-parasite interaction and disease control. The estimation of chlorophyll content in the infected seedlings possibly could provide a good indicator for degree of disease or infection, and changes during pathogenesis. Thus, the objective of this study was to evaluate the relationship between disease severity index (DSI) and chlorophyll content in Ganoderma infected oil palm seedlings. Three-month-old oil palm seedlings were infected with Ganoderma inoculum on rubber wood block (RWB), where 44 isolates of Ganoderma were tested. Disease severity index (DSI) and chlorophyll content using a single-photon avalanche diode (SPAD) meter were recorded at 4 weeks interval for a period of 24 weeks after inoculation (WAI). Pearson's correlation analysis and regression analysis were performed to evaluate the relationship between the variables. It was found that the relationship between DSI and SPAD chlorophyll value was inversely proportional (R = -0.92) in a linear trend (R2 = 0.85). Furthermore, the increasing trend of the DSI across the weeks were fitted in a quadratic model (R2 = 0.99). In contrast, the SPAD chlorophyll value declined in a linear trend (R2 = 0.98). The SPAD chlorophyll value could be considered as a better alternative over the DSI as the SPAD chlorophyll value was strongly related to DSI, as well as able to detect physiological changes in the infected oil palm seedlings at the early stages of pathogenesis. J Bangladesh Agril Univ 17(3): 355–358, 2019

Variation patterns within 153 flax (Linum usitatissimum L.) genebank accessions based on evaluation for resistance to fusarium wilt, anthracnose and pasmo

2008 ◽  
Vol 6 (1) ◽  
pp. 22-32 ◽  
Author(s):  
Axel Diederichsen ◽  
Tatiana A. Rozhmina ◽  
Ljudmilla P. Kudrjavceva
Keyword(s):  
Disease Severity ◽  
Fusarium Wilt ◽  
Linum Usitatissimum ◽  
Indian Subcontinent ◽  
Severity Index ◽  
Disease Severity Index ◽  
Fibre Flax ◽  
Linum Usitatissimum L ◽  
Average Resistance ◽  
Variation Patterns

Germplasm of 153 flax (Linum usitatissimum) accessions from 24 countries held at Plant Gene Resources of Canada (PGRC) was evaluated for resistance to fusarium wilt (Fusarium oxysporum), anthracnose (Colletotrichum lini) and pasmo (Septoria linicola). The screening was conducted at the All-Russian Flax Research Institute (VNIIL) at Torzhok, Russia, over 3 years for fusarium wilt and anthracnose, and over 2 years for pasmo. A disease severity index ranging from 0% (no infection) to 100% (heavy infection) was calculated based on observations after artificial inoculation with the pathogens in the greenhouse (fusarium wilt) or in field nurseries (anthracnose and pasmo). The average disease severity index for fusarium wilt was 56.6 ± 34.4% (range 0–100.0%), for anthracnose 59.8 ± 8.1% (range 43.8–83.9%) and for pasmo 74.2 ± 11.8% (range 27.3–100.0%). The variation of disease severity indices among the years and within each accession was highest for fusarium wilt. Higher than average resistance for all three diseases was found in accessions from East Asia, while germplasm from the Indian subcontinent showed considerably lower than average resistance. Germplasm from North America and South America (mostly linseed) displayed above average resistance to fusarium wilt, while European accessions (mostly fibre flax) showed lower than average resistance to this disease. The different resistance levels reflected the improvements made by plant breeding and differences in the environments under which the germplasm accessions evolved. Accessions with potential use in linseed and fibre flax breeding were identified.

Inheritance of resistance to Mal de Río Cuarto (MRC) disease in Zea mays (L.)

2002 ◽  
Vol 139 (1) ◽  
pp. 47-53 ◽  
Author(s):  
M. A. DI RENZO ◽  
N. C. BONAMICO ◽  
D. D. DÍAZ ◽  
J. C. SALERNO ◽  
M. M. IBAÑEZ ◽  
...  
Keyword(s):  
Zea Mays ◽  
Plant Height ◽  
Disease Severity ◽  
Agronomic Traits ◽  
Severity Index ◽  
Point Estimate ◽  
Environment Interaction ◽  
Disease Severity Index ◽  
Evaluation Activity ◽  
Genotype Environment Interaction

No genetic estimates for resistance to Mal de Río Cuarto (MRC) disease in Zea mays (L.) are currently available in the literature. Therefore, the objectives of this investigation were (i) to estimate the variance and heritability of partial resistance to MRC disease and of other agronomic traits from maize families and (ii) to examine associations among MRC disease severity values across different environments and between MRC and other agronomic traits. These estimations, obtained in an endemic area, could contribute to the design of efficient enhancement programmes and evaluation activity for the improvement of MRC resistance. The research was conducted by testing 227 F3 derived-lines from a cross between a susceptible dent line, Mo17, and a partially resistant flint line, BLS14, for MRC disease at two Río Cuarto locations in each of 2 years. The resistance of the lines, measured with a disease severity index (DSI), was normally distributed across environments. Genotypic variances were highly significant on all scoring environments. Estimates of genotype–environment interaction were also significant, suggesting that certain genotypes have little stability over different environments. For disease severity index all estimates demonstrated moderate heritabilities ranging from 0.44 to 0.56 and were similar when based on individual environments or across environment. Confidence interval widths ranged from 34.88 to 50.30% as large as the heritability point estimate. The correlations between environments were small enough to indicate that families did not rank similarly in individual environments for MRC resistance. Disease severity index correlated significantly (P<0.01) with plant height, leaf surface, leaf border, leaf length and tassel type. Heritability estimates for plant height and tassel type were 0.48 and 0.38 respectively and for the various leaf traits heritability values were very low. On the basis of the substantial genotype–environment interaction and the little association between DSI values in the different environments, selection for an increased resistance to MRC disease would require evaluation of germplasm across multiple years and locations. Tassel type would be a useful predictor of DSI and can be used effectively to improve screening procedures.

Evaluation of disease forecasting variables for sclerotinia stem rot (Sclerotinia sclerotiorum) of canola

2000 ◽  
Vol 80 (4) ◽  
pp. 889-898 ◽  
Author(s):  
M. Bom ◽  
G. J. Boland
Keyword(s):  
Soil Moisture ◽  
Disease Severity ◽  
Sclerotinia Sclerotiorum ◽  
Prediction Models ◽  
Disease Incidence ◽  
Stem Rot ◽  
Disease Prediction ◽  
Strong Correlations ◽  
Sclerotinia Stem Rot ◽  
Spring Canola

Selected environmental, crop and pathogen variables were sampled weekly from winter and spring canola crops before and during flowering and evaluated for the ability to predict sclerotinia stem rot, caused by Sclertinia sclerotirum. Linear and nonlinear relationships were examined among variables but, because no strong correlations were observed between final disease incidence and any of the variables tested, a categorical approach (e.g., disease severity) was used instead. Disease severity in individual crops was categorized as low (< 20% diseased plants) or high (> 20% disease), and differences in weekly rainfall, soil moisture, crop height, percentage of petal infestation, and number of apothecia m−2 and clumps of apothecia m−2 were significantly associated with differences in disease severity within or between years. Two disease prediction models were compared for the ability to predict low or high disease severities using petal infestation alone, or petal infestation in combination with soil moisture. The model that included petal infestation and soil moisture predicted more fields correctly than the model using petal infestation alone, but the accuracy of both was affected by the timing of soil moisture measurements in relation to petal infestation, and threshold values used in discriminating categories of soil moisture and petal infestation. Key words: Brassica rapa, Brassica napus, Sclerotinia sclerotiorum, disease prediction

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