scholarly journals Estimating dispersal kernels using genetic parentage data

2016 ◽  
Author(s):  
Michael Bode ◽  
David Williamson ◽  
Hugo Harrison ◽  
Nick Outram ◽  
Geoffrey P. Jones

AbstractDispersal kernels are the standard method for describing and predicting the relationship between dispersal strength and distance. Statistically-fitted dispersal kernels allow observations of a limited number of dispersal events to be extrapolated across a wider landscape, and form the basis of a wide range of theories and methods in ecology, evolution and conservation. Genetic parentage data are an increasingly common source of dispersal information, particularly for species where dispersal is difficult to observe directly. It is now routinely applied to coral reef fish, whose larvae disperse over many kilometers and are too small to follow directly. However, it is not straightforward to estimate dispersal kernels from parentage data, and existing methods each have substantial limitations. Here we develop and proof a new statistical estimator for fitting dispersal kernels to parentage data, applying it to simulated and empirical datasets of reef fish parentage. The method incorporates a series of factors omitted in previous methods: the partial sampling of adults and juveniles on sampled reefs; the existence of unassigned dispersers from unsampled reefs; and post-settlement processes (e.g., density dependent mortality) that follow dispersal but precede parentage sampling. Power analyses indicate that the highest levels of sampling currently used for reef fishes is sufficient to fit accurate dispersal kernels. Sampling is best distributed equally between adults and juveniles, and over more than ten populations. Importantly, we show that accounting for unsampled or unassigned individuals – including adult individuals on partially-sampled and unsampled patches – is essential for a precise and unbiased estimate of dispersal.

2008 ◽  
Vol 276 (1656) ◽  
pp. 523-532 ◽  
Author(s):  
Matthias C Wichmann ◽  
Matt J Alexander ◽  
Merel B Soons ◽  
Stephen Galsworthy ◽  
Laura Dunne ◽  
...  

Human activities have fundamental impacts on the distribution of species through altered land use, but also directly by dispersal of propagules. Rare long-distance dispersal events have a disproportionate importance for the spread of species including invasions. While it is widely accepted that humans may act as vectors of long-distance dispersal, there are few studies that quantify this process. We studied in detail a mechanism of human-mediated dispersal (HMD). For two plant species we measured, over a wide range of distances, how many seeds are carried by humans on shoes. While over half of the seeds fell off within 5 m, seeds were regularly still attached to shoes after 5 km. Semi-mechanistic models were fitted, and these suggested that long-distance dispersal on shoes is facilitated by decreasing seed detachment probability with distance. Mechanistic modelling showed that the primary vector, wind, was less important as an agent of long-distance dispersal, dispersing seeds less than 250 m. Full dispersal kernels were derived by combining the models for primary dispersal by wind and secondary dispersal by humans. These suggest that walking humans can disperse seeds to very long distances, up to at least 10 km, and provide some of the first quantified dispersal kernels for HMD.


2008 ◽  
pp. 61-76
Author(s):  
A. Porshakov ◽  
A. Ponomarenko

The role of monetary factor in generating inflationary processes in Russia has stimulated various debates in social and scientific circles for a relatively long time. The authors show that identification of the specificity of relationship between money and inflation requires a complex approach based on statistical modeling and involving a wide range of indicators relevant for the price changes in the economy. As a result a model of inflation for Russia implying the decomposition of inflation dynamics into demand-side and supply-side factors is suggested. The main conclusion drawn is that during the recent years the volume of inflationary pressures in the Russian economy has been determined by the deviation of money supply from money demand, rather than by money supply alone. At the same time, monetary factor has a long-run spread over time impact on inflation.


2020 ◽  
Vol 649 ◽  
pp. 125-140
Author(s):  
DS Goldsworthy ◽  
BJ Saunders ◽  
JRC Parker ◽  
ES Harvey

Bioregional categorisation of the Australian marine environment is essential to conserve and manage entire ecosystems, including the biota and associated habitats. It is important that these regions are optimally positioned to effectively plan for the protection of distinct assemblages. Recent climatic variation and changes to the marine environment in Southwest Australia (SWA) have resulted in shifts in species ranges and changes to the composition of marine assemblages. The goal of this study was to determine if the current bioregionalisation of SWA accurately represents the present distribution of shallow-water reef fishes across 2000 km of its subtropical and temperate coastline. Data was collected in 2015 using diver-operated underwater stereo-video surveys from 7 regions between Port Gregory (north of Geraldton) to the east of Esperance. This study indicated that (1) the shallow-water reef fish of SWA formed 4 distinct assemblages along the coast: one Midwestern, one Central and 2 Southern Assemblages; (2) differences between these fish assemblages were primarily driven by sea surface temperature, Ecklonia radiata cover, non-E. radiata (canopy) cover, understorey algae cover, reef type and reef height; and (3) each of the 4 assemblages were characterised by a high number of short-range Australian and Western Australian endemic species. The findings from this study suggest that 4, rather than the existing 3 bioregions would more effectively capture the shallow-water reef fish assemblage patterns, with boundaries having shifted southwards likely associated with ocean warming.


2013 ◽  
Vol 1 (2) ◽  
pp. 117
Author(s):  
Fakhrizal Setiawan ◽  
Janny D Kusen ◽  
Georis JF Kaligis

In order to look at changes in coral and reef fish communities during the period of 2006 to 2013, this research was carried out at Bunaken National Park (BNP) with 26 observation sites. The existing data and information of reef fish communities in the park generally could not be used as representative for describing the whole region. Percentage of coral cover and fish abundance during the study period shows that Bunaken Island is more similar to other locations. Reef fish community structure as seen from ecological index (H' at all sites being categorized, E category labile and low category C) shows the condition of the reef fish community is still good. Changes in the structure of reef fish communities showed declining conditions compared to 2006, and coral cover continued to decrease compared to 1998 and 2007. Good overall reef fish and coral cover have decreased; it is thought to be related to the pressure in BNP. Some of the pressures in the region were (i) increasing numbers of domestic as well as foreign visitors, (ii) increasing number of residents in the region, as well as the burden of waste and trash from the Bay of Manado. Penelitian dilakukan di Taman Nasional Bunaken (Utara dan Selatan)   pada 26 lokasi  pengamatan untuk menganalisis perubahan struktur komunitas ikan karang melalui kajian dari suatu time series data dari beberapa penelitian sebelumnya. Data primer mengenai ikan-ikan karang diperoleh melalui visual sensus bawah air yang bersamaan dengan observasi terumbu karang menggunakan point intercept transect. Nilai persentase tutupan karang dan kelimpahan ikan menunjukkan bahwa pada lokasi pengamatan Pulau Bunaken paling baik dibandingan lokasi lainnya. Struktur komunitas ikan karang yang dianalisis dengan indeks ekologi menunjukkan indeks keanekaragaman (H’) di semua site masuk kategori sedang, indeks kesamaan (E) kategori labil dan indeks Dominansi (C) kategori rendah. Hasil penelitian ini menunjukkan bahwa kondisi komunitas ikan karang masih baik, sekalipun  perubahan struktur komunitas ikan karang menunjukkan kondisi yang menurun dibandingkan tahun 2006, begitu juga tutupan karang yang terus turun dibandingkan tahun 1998 dan 2007. Secara keseluruhan baik ikan karang maupun tutupan karang mengalami penurunan, hal ini diduga terkait dengan tekanan yang dialami kawasan TN. Bunaken. Salah satu tekanan terhadap kawasan adalah jumlah turis dari dalam maupun luar negeri yang semakin meningkat tiap tahunnya, penambahan jumlah penduduk di dalam kawasan, serta beban limbah dan sampah dari Teluk Manado.


2021 ◽  
Vol 43 (1) ◽  
pp. 1-79
Author(s):  
Colin S. Gordon

Effect systems are lightweight extensions to type systems that can verify a wide range of important properties with modest developer burden. But our general understanding of effect systems is limited primarily to systems where the order of effects is irrelevant. Understanding such systems in terms of a semilattice of effects grounds understanding of the essential issues and provides guidance when designing new effect systems. By contrast, sequential effect systems—where the order of effects is important—lack an established algebraic structure on effects. We present an abstract polymorphic effect system parameterized by an effect quantale—an algebraic structure with well-defined properties that can model the effects of a range of existing sequential effect systems. We define effect quantales, derive useful properties, and show how they cleanly model a variety of known sequential effect systems. We show that for most effect quantales, there is an induced notion of iterating a sequential effect; that for systems we consider the derived iteration agrees with the manually designed iteration operators in prior work; and that this induced notion of iteration is as precise as possible when defined. We also position effect quantales with respect to work on categorical semantics for sequential effect systems, clarifying the distinctions between these systems and our own in the course of giving a thorough survey of these frameworks. Our derived iteration construct should generalize to these semantic structures, addressing limitations of that work. Finally, we consider the relationship between sequential effects and Kleene Algebras, where the latter may be used as instances of the former.


2021 ◽  
pp. 1-8
Author(s):  
Paul Theo Zebhauser ◽  
Achim Berthele ◽  
Marie-Sophie Franz ◽  
Oliver Goldhardt ◽  
Janine Diehl-Schmid ◽  
...  

Background: Tau proteins are established biomarkers of neuroaxonal damage in a wide range of neurodegenerative conditions. Although measurement of total-Tau in the cerebrospinal fluid is widely used in research and clinical settings, the relationship between age and total-Tau in the cerebrospinal fluid is yet to be fully understood. While past studies reported a correlation between age and total-Tau in the cerebrospinal fluid of healthy adults, in clinical practice the same cut-off value is used independently of patient’s age. Objective: To further explore the relationship between age and total-Tau and to disentangle neurodegenerative from drainage-dependent effects. Methods: We analyzed cerebrospinal fluid samples of 76 carefully selected cognitively healthy adults and included amyloid-β 1–40 as a potential marker of drainage from the brain’s interstitial system. Results: We found a significant correlation of total-Tau and age, which was no longer present when correcting total-Tau for amyloid-β 1–40 concentrations. These findings were replicated under varied inclusion criteria. Conclusion: Results call into question the association of age and total-Tau in the cerebrospinal fluid. Furthermore, they suggest diagnostic utility of amyloid-β 1–40 as a possible proxy for drainage-mechanisms into the cerebrospinal fluid when interpreting biomarker concentrations for neurodegenerative diseases.


2020 ◽  
Vol 6 (1) ◽  
pp. 50-56
Author(s):  
Francesco Baino ◽  
Elisa Fiume

AbstractPorosity is known to play a pivotal role in dictating the functional properties of biomedical scaffolds, with special reference to mechanical performance. While compressive strength is relatively easy to be experimentally assessed even for brittle ceramic and glass foams, elastic properties are much more difficult to be reliably estimated. Therefore, describing and, hence, predicting the relationship between porosity and elastic properties based only on the constitutive parameters of the solid material is still a challenge. In this work, we quantitatively compare the predictive capability of a set of different models in describing, over a wide range of porosity, the elastic modulus (7 models), shear modulus (3 models) and Poisson’s ratio (7 models) of bioactive silicate glass-derived scaffolds produced by foam replication. For these types of biomedical materials, the porosity dependence of elastic and shear moduli follows a second-order power-law approximation, whereas the relationship between porosity and Poisson’s ratio is well fitted by a linear equation.


2015 ◽  
Vol 19 (5) ◽  
pp. 488-530
Author(s):  
Cynthia Fowler

This article examines the Religious Art of Today exhibition, originally held in 1944 at Boston’s Institute of Modern Art and then reformulated for the Dayton Art Institute in Ohio. The exhibition was eclectic in that it included a wide range of artists and a diversity of faiths, and engaged the debate held among museum professionals about the relationship between religion and modern art. The article focuses closely on Catholic, Jewish, and Navajo art included in the exhibition. The IMA’s commitment to the figurative tradition afforded artists the opportunity to explore their identities—as Jews, as Catholics, as Navajos—using recognizable religious subjects. That the works in the exhibition were selected as representative of modern art resulted in a convergence of discourses related to modern art with those of religious/cultural identity.


Molecules ◽  
2021 ◽  
Vol 26 (13) ◽  
pp. 3888
Author(s):  
Boon-Peng Puah ◽  
Juriyati Jalil ◽  
Ali Attiq ◽  
Yusof Kamisah

Lycopene is a well-known compound found commonly in tomatoes which brings wide range of health benefits against cardiovascular diseases and cancers. From an anti-cancer perspective, lycopene is often associated with reduced risk of prostate cancer and people often look for it as a dietary supplement which may help to prevent cancer. Previous scientific evidence exhibited that the anti-cancer activity of lycopene relies on its ability to suppress oncogene expressions and induce proapoptotic pathways. To further explore the real potential of lycopene in cancer prevention, this review discusses the new insights and perspectives on the anti-cancer activities of lycopene which could help to drive new direction for research. The relationship between inflammation and cancer is being highlighted, whereby lycopene suppresses cancer via resolution of inflammation are also discussed herein. The immune system was found to be a part of the anti-cancer system of lycopene as it modulates immune cells to suppress tumor growth and progression. Lycopene, which is under the family of carotenoids, was found to play special role in suppressing lung cancer.


2020 ◽  
Vol 12 (9) ◽  
pp. 3668 ◽  
Author(s):  
Rakan Alyamani ◽  
Suzanna Long ◽  
Mohammad Nurunnabi

With the increase in awareness about the wide range of issues and adverse effects associated with the use of conventional energy sources came an increase in project management research related to sustainability and sustainable development. Part of that research is devoted to the development of sustainable project typologies that classify projects based on a variety of external factors that can significantly impact these projects. This research focuses on developing a sustainable project typology that classifies sustainable projects based on the external institutional influences. The typology explores the influence of the coercive, normative, and mimetic institutional isomorphisms on the expected level of change, level of uncertainty, project team skills and experience levels, and the level of technology information exchange in sustainable projects. Two case studies are presented to demonstrate the use of the typology to classify sustainable projects based on the external institutional influences.


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