scholarly journals Fast and Robust Segmentation of Copy Number Profiles Using Multi-Scale Edge Detection

2016 ◽  
Author(s):  
Ivo W Kwee ◽  
Andrea Rinaldi ◽  
Cassio Polpo de Campos ◽  
Francesco Bertoni
Keyword(s):  
Edge Detection ◽  
Copy Number ◽  
State Of The Art ◽  
Copy Number Data ◽  
Multi Scale ◽  
Robust Segmentation ◽  
Segmentation Methods ◽  
Novel Method ◽  
Genomic Waves

ABSTRACTRaw copy number data is highly dimensional, noisy and can suffer from so-called genomic wave artifacts. We introduce a novel method based on multi-scale edge detection in derivative space. By using derivatives, the algorithm was very fast and robust against genomic waves. Our method compared very well to existing state-of-the-art segmentation methods and importantly outperformed these if noise and wave artifacts were well present.

scholarly journals MDAN-UNet: Multi-Scale and Dual Attention Enhanced Nested U-Net Architecture for Segmentation of Optical Coherence Tomography Images

Algorithms ◽  
2020 ◽  
Vol 13 (3) ◽  
pp. 60 ◽  
Author(s):  
Wen Liu ◽  
Yankui Sun ◽  
Qingge Ji
Keyword(s):  
Optical Coherence Tomography ◽  
State Of The Art ◽  
Imaging Technique ◽  
Optical Coherence ◽  
Convolutional Network ◽  
Multi Scale ◽  
Segmentation Methods ◽  
Benchmark Datasets ◽  
Resolution Imaging ◽  
Layer Segmentation

Optical coherence tomography (OCT) is an optical high-resolution imaging technique for ophthalmic diagnosis. In this paper, we take advantages of multi-scale input, multi-scale side output and dual attention mechanism and present an enhanced nested U-Net architecture (MDAN-UNet), a new powerful fully convolutional network for automatic end-to-end segmentation of OCT images. We have evaluated two versions of MDAN-UNet (MDAN-UNet-16 and MDAN-UNet-32) on two publicly available benchmark datasets which are the Duke Diabetic Macular Edema (DME) dataset and the RETOUCH dataset, in comparison with other state-of-the-art segmentation methods. Our experiment demonstrates that MDAN-UNet-32 achieved the best performance, followed by MDAN-UNet-16 with smaller parameter, for multi-layer segmentation and multi-fluid segmentation respectively.

scholarly journals Fast horizon detection in maritime images using region-of-interest

2018 ◽  
Vol 14 (7) ◽  
pp. 155014771879075 ◽  
Author(s):  
Chi Yoon Jeong ◽  
Hyun S Yang ◽  
KyeongDeok Moon
Keyword(s):  
Edge Detection ◽  
State Of The Art ◽  
Region Of Interest ◽  
Least Square ◽  
Fast Method ◽  
Multi Scale ◽  
Art Methods ◽  
Horizon Line ◽  
Horizon Detection ◽  
Interest Detection

In this article, we propose a fast method for detecting the horizon line in maritime scenarios by combining a multi-scale approach and region-of-interest detection. Recently, several methods that adopt a multi-scale approach have been proposed, because edge detection at a single is insufficient to detect all edges of various sizes. However, these methods suffer from high processing times, requiring tens of seconds to complete horizon detection. Moreover, the resolution of images captured from cameras mounted on vessels is increasing, which reduces processing speed. Using the region-of-interest is an efficient way of reducing the amount of processing information required. Thus, we explore a way to efficiently use the region-of-interest for horizon detection. The proposed method first detects the region-of-interest using a property of maritime scenes and then multi-scale edge detection is performed for edge extraction at each scale. The results are then combined to produce a single edge map. Then, Hough transform and a least-square method are sequentially used to estimate the horizon line accurately. We compared the performance of the proposed method with state-of-the-art methods using two publicly available databases, namely, Singapore Marine Dataset and buoy dataset. Experimental results show that the proposed method for region-of-interest detection reduces the processing time of horizon detection, and the accuracy with which the proposed method can identify the horizon is superior to that of state-of-the-art methods.

scholarly journals Adaptive Feature Pyramid Network to Predict Crisp Boundaries via NMS Layer and ODS F-Measure Loss Function

Information ◽  
2022 ◽  
Vol 13 (1) ◽  
pp. 32
Author(s):  
Gang Sun ◽  
Hancheng Yu ◽  
Xiangtao Jiang ◽  
Mingkui Feng
Keyword(s):  
Edge Detection ◽  
Loss Function ◽  
State Of The Art ◽  
Cross Entropy ◽  
Post Processing ◽  
Multi Scale ◽  
Feature Pyramid ◽  
Multi Level ◽  
Different Levels ◽  
F Measure

Edge detection is one of the fundamental computer vision tasks. Recent methods for edge detection based on a convolutional neural network (CNN) typically employ the weighted cross-entropy loss. Their predicted results being thick and needing post-processing before calculating the optimal dataset scale (ODS) F-measure for evaluation. To achieve end-to-end training, we propose a non-maximum suppression layer (NMS) to obtain sharp boundaries without the need for post-processing. The ODS F-measure can be calculated based on these sharp boundaries. So, the ODS F-measure loss function is proposed to train the network. Besides, we propose an adaptive multi-level feature pyramid network (AFPN) to better fuse different levels of features. Furthermore, to enrich multi-scale features learned by AFPN, we introduce a pyramid context module (PCM) that includes dilated convolution to extract multi-scale features. Experimental results indicate that the proposed AFPN achieves state-of-the-art performance on the BSDS500 dataset (ODS F-score of 0.837) and the NYUDv2 dataset (ODS F-score of 0.780).

scholarly journals Bi-Directional Pyramid Network for Edge Detection

Electronics ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 329
Author(s):  
Kai Li ◽  
Yingjie Tian ◽  
Bo Wang ◽  
Zhiquan Qi ◽  
Qi Wang
Keyword(s):  
Edge Detection ◽  
State Of The Art ◽  
Critical Role ◽  
Human Perception ◽  
Test Accuracy ◽  
Multi Scale ◽  
Scale Method ◽  
Fast Training ◽  
Single Scale ◽  
Scale Test

Multi-scale representation plays a critical role in the field of edge detection. However, most of the existing research focuses on one of two aspects: fast training and accurate testing. In this paper, we propose a novel multi-scale method to resolve the balance between them. Specifically, according to multi-stream structures and the image pyramid principle, we construct a down-sampling pyramid network and a lightweight up-sampling pyramid network to enrich the multi-scale representation from the encoder and decoder, respectively. Next, these two pyramid networks and a backbone network constitute our overall architecture, a bi-directional pyramid network (BDP-Net). Extensive experiments show that compared with the state-of-the-art model, our method could improve the training speed by about one time while retaining a similar test accuracy. Especially, under the single-scale test, our approach also reaches human perception (F1 score of 0.803) on the BSDS500 database.

scholarly journals COVID-19 infection map generation and detection from chest X-ray images

2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Aysen Degerli ◽  
Mete Ahishali ◽  
Mehmet Yamac ◽  
Serkan Kiranyaz ◽  
Muhammad E. H. Chowdhury ◽  
...  
Keyword(s):  
State Of The Art ◽  
Ground Truth ◽  
Clinical Use ◽  
X Ray ◽  
Learning Techniques ◽  
Map Generation ◽  
Severity Grading ◽  
Chest X Ray ◽  
Novel Method ◽  
Aided Diagnosis

AbstractComputer-aided diagnosis has become a necessity for accurate and immediate coronavirus disease 2019 (COVID-19) detection to aid treatment and prevent the spread of the virus. Numerous studies have proposed to use Deep Learning techniques for COVID-19 diagnosis. However, they have used very limited chest X-ray (CXR) image repositories for evaluation with a small number, a few hundreds, of COVID-19 samples. Moreover, these methods can neither localize nor grade the severity of COVID-19 infection. For this purpose, recent studies proposed to explore the activation maps of deep networks. However, they remain inaccurate for localizing the actual infestation making them unreliable for clinical use. This study proposes a novel method for the joint localization, severity grading, and detection of COVID-19 from CXR images by generating the so-called infection maps. To accomplish this, we have compiled the largest dataset with 119,316 CXR images including 2951 COVID-19 samples, where the annotation of the ground-truth segmentation masks is performed on CXRs by a novel collaborative human–machine approach. Furthermore, we publicly release the first CXR dataset with the ground-truth segmentation masks of the COVID-19 infected regions. A detailed set of experiments show that state-of-the-art segmentation networks can learn to localize COVID-19 infection with an F1-score of 83.20%, which is significantly superior to the activation maps created by the previous methods. Finally, the proposed approach achieved a COVID-19 detection performance with 94.96% sensitivity and 99.88% specificity.

scholarly journals PCAN—Part-Based Context Attention Network for Thermal Power Plant Detection in Remote Sensing Imagery

2021 ◽  
Vol 13 (7) ◽  
pp. 1243
Author(s):  
Wenxin Yin ◽  
Wenhui Diao ◽  
Peijin Wang ◽  
Xin Gao ◽  
Ya Li ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Power Plants ◽  
State Of The Art ◽  
Thermal Power ◽  
Image Interpretation ◽  
Remote Sensing Image ◽  
Thermal Power Plants ◽  
Average Precision ◽  
Deep Convolutional Neural Networks ◽  
Multi Scale

The detection of Thermal Power Plants (TPPs) is a meaningful task for remote sensing image interpretation. It is a challenging task, because as facility objects TPPs are composed of various distinctive and irregular components. In this paper, we propose a novel end-to-end detection framework for TPPs based on deep convolutional neural networks. Specifically, based on the RetinaNet one-stage detector, a context attention multi-scale feature extraction network is proposed to fuse global spatial attention to strengthen the ability in representing irregular objects. In addition, we design a part-based attention module to adapt to TPPs containing distinctive components. Experiments show that the proposed method outperforms the state-of-the-art methods and can achieve 68.15% mean average precision.

scholarly journals ART-UP: A Novel Method for Generating Scanning-Robust Aesthetic QR Codes

2021 ◽  
Vol 17 (1) ◽  
pp. 1-23
Author(s):  
Mingliang Xu ◽  
Qingfeng Li ◽  
Jianwei Niu ◽  
Hao Su ◽  
Xiting Liu ◽  
...  
Keyword(s):  
State Of The Art ◽  
Visual Quality ◽  
Qr Code ◽  
Quick Response ◽  
Estimation Model ◽  
Qr Codes ◽  
Excellent Performance ◽  
Novel Method ◽  
Coarse To Fine

Quick response (QR) codes are usually scanned in different environments, so they must be robust to variations in illumination, scale, coverage, and camera angles. Aesthetic QR codes improve the visual quality, but subtle changes in their appearance may cause scanning failure. In this article, a new method to generate scanning-robust aesthetic QR codes is proposed, which is based on a module-based scanning probability estimation model that can effectively balance the tradeoff between visual quality and scanning robustness. Our method locally adjusts the luminance of each module by estimating the probability of successful sampling. The approach adopts the hierarchical, coarse-to-fine strategy to enhance the visual quality of aesthetic QR codes, which sequentially generate the following three codes: a binary aesthetic QR code, a grayscale aesthetic QR code, and the final color aesthetic QR code. Our approach also can be used to create QR codes with different visual styles by adjusting some initialization parameters. User surveys and decoding experiments were adopted for evaluating our method compared with state-of-the-art algorithms, which indicates that the proposed approach has excellent performance in terms of both visual quality and scanning robustness.

scholarly journals PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Changyong Li ◽  
Yongxian Fan ◽  
Xiaodong Cai
Keyword(s):  
Image Segmentation ◽  
Deep Learning ◽  
State Of The Art ◽  
Experimental Results ◽  
Actual Situation ◽  
Controlled Experiments ◽  
Biomedical Image ◽  
Segmentation Methods ◽  
Art Performance

Abstract Background With the development of deep learning (DL), more and more methods based on deep learning are proposed and achieve state-of-the-art performance in biomedical image segmentation. However, these methods are usually complex and require the support of powerful computing resources. According to the actual situation, it is impractical that we use huge computing resources in clinical situations. Thus, it is significant to develop accurate DL based biomedical image segmentation methods which depend on resources-constraint computing. Results A lightweight and multiscale network called PyConvU-Net is proposed to potentially work with low-resources computing. Through strictly controlled experiments, PyConvU-Net predictions have a good performance on three biomedical image segmentation tasks with the fewest parameters. Conclusions Our experimental results preliminarily demonstrate the potential of proposed PyConvU-Net in biomedical image segmentation with resources-constraint computing.

Sign in / Sign up

Export Citation Format

Share Document