scholarly journals Genetic diversity, structure, and kinship analysis of Trachemys venusta venusta in Wildlife Management Units and wild populations in south Mexico. Implications for conservation and management

2020 ◽  
Author(s):  
Elsi B. Recino-Reyes ◽  
Julia M. Lesher-Gordillo ◽  
Salima Machkour-M’Rabet ◽  
Manuel I. Gallardo-Alvárez ◽  
Claudia E. Zenteno-Ruiz ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Natural Populations ◽  
Management Plan ◽  
Freshwater Turtle ◽  
Freshwater Turtles ◽  
Wild Populations ◽  
Genetic Management ◽  
Kinship Analysis ◽  
Management Units ◽  
The Impact

AbstractThe Meso-American slider turtle (Trachemys venusta) is a freshwater turtle endemic to Mexico and Central America. Due to the overexploitation of its natural populations, it is in the at risk category formulated by the Official Mexican Standard NOM-059-ECOL-2010. In the state of Tabasco, Management Units for the Conservation of Wildlife (UMA) were created to reduce the impact of overexploitation of freshwater turtles. However, no genetic management plan was considered. This study presents the level of genetic diversity of the founder individuals in order to develop a management plan which will optimize reproduction in the UMA. Genetic diversity was compared between captive (n = 45) and wild (n = 86) individuals using 14 microsatellite molecular markers. Level of genetic diversity could be considered as low (He < 0.6) for a species of turtle and suggests that a higher level of protection is required for this particular species. Furthermore, values were slightly higher for the captive group reflecting the mix of genetic sources (founding individuals from different localities) and demonstrating that the captive population is genetically representative of natural populations. The genetic structure analysis revealed a relationship between captive and wild populations, indicating the influence of the two principal river basins in this region on the population of freshwater turtles. Finally, according to the results obtained from the analysis conducted using Storm and ML-Relate programs, we recommend the use of 19 females and 13 males, generating a potential of 247 dyads with no relationship. These first results of genetic management in a Mexican UMA, demonstrate the importance of molecular approaches at the time of managing and conserving species in captivity.

scholarly journals Conservation and Management of Trachemys venusta venusta in Southern Mexico: A Genetic Approach

2020 ◽  
Vol 13 ◽  
pp. 194008292096150
Author(s):  
Elsi Beatriz Recino-Reyes ◽  
Julia María Lesher-Gordillo ◽  
Salima Machkour-M’Rabet ◽  
Manuel Ignacio Gallardo-Alvarez ◽  
Claudia Elena Zenteno-Ruiz ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Management Plan ◽  
The State ◽  
Freshwater Turtle ◽  
Captive Population ◽  
Freshwater Turtles ◽  
Genetic Management ◽  
Southern Mexico ◽  
Relationship Analysis ◽  
The Impact

The Meso-American slider turtle ( Trachemys venusta) is a freshwater turtle that is widely distributed from Mexico to Colombia. Due to the overexploitation of populations of this species in Mexico, it has been placed within the “subject to special protection” category formulated by the Official Mexican Standard NOM-059-ECOL-2010. In the state of Tabasco, Mexico, Management Units for the Conservation of Wildlife (UMA) were created to reduce the impact of overexploitation of freshwater turtles bred in captivity. However, no genetic management plan was considered. The present study was carried out in an UMA in the state of Tabasco. We obtained the level of genetic diversity of the founder individuals of the UMA in order to develop a management plan which will optimize reproduction in the UMA. Genetic diversity was compared between captive (n = 86) and wild (n = 45) individuals using 14 microsatellite molecular markers. The genetic diversity parameter ​​determined in this study was slightly higher for captive than for wild population ( He = 0.606 and He = 0.594 respectively), reflecting the mix of genetic sources in captive group (founding individuals from different localities) and demonstrating that the captive population contains a diverse subset of alleles from representative populations. The analysis of genetic structure revealed a relationship between captive and wild populations, indicating the influence of the two principal river basins in this region on the populations structure of freshwater turtles. Finally, according to the results obtained from the relationship analysis, we recommend the use of 19 females and 13 males to constitute the appropriate breeding group, generating a potential of 247 dyads with no relationship. However, in order to improve breeding program and the genetic diversity of captive population, we suggest to introduce wild-caught individuals. These results are the first regarding genetic management in a Mexican UMA and demonstrate the importance of molecular approaches in the management and conservation of captive species.

scholarly journals Alive and kicking, or, living on borrowed time? – Microsatellite diversity in natural populations of the endangered Ulmus minor Mill. sensu latissimo from Croatia

2016 ◽  
Vol 75 (1) ◽  
pp. 53-59 ◽  
Author(s):  
Marko Zebec ◽  
Marilena Idžojtić ◽  
Zlatko Šatović ◽  
Igor Poljak ◽  
Zlatko Liber
Keyword(s):  
Genetic Diversity ◽  
Natural Populations ◽  
Genetic Bottleneck ◽  
Dutch Elm Disease ◽  
Significant Excess ◽  
Mediterranean Populations ◽  
Ulmus Minor ◽  
Study Results ◽  
The Impact ◽  
Microsatellite Diversity

AbstractThe main objective of this research was to assess the genetic diversity of 5 natural field elm populations in Croatia. The study results suggest that the observed populations are characterized by a satisfactory amount of heterozygosity, and that the impact of the Dutch elm disease on the amount of genetic diversity in the sampled populations is currently negligible. However, one population displayed a significant excess of heterozygosity, implying a genetic bottleneck. The existence of a very clear genetic differentiation between the continental and the Mediterranean populations of Ulmus minor in Croatia was noticed.

scholarly journals Coalescent Theory of Migration Network Motifs

2019 ◽  
Vol 36 (10) ◽  
pp. 2358-2374
Author(s):  
Nicolas Alcala ◽  
Amy Goldberg ◽  
Uma Ramakrishnan ◽  
Noah A Rosenberg
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Nucleotide Diversity ◽  
Natural Populations ◽  
Node Degree ◽  
Small Subset ◽  
Network Motifs ◽  
Coalescent Theory ◽  
Migration Networks ◽  
The Impact

Abstract Natural populations display a variety of spatial arrangements, each potentially with a distinctive impact on genetic diversity and genetic differentiation among subpopulations. Although the spatial arrangement of populations can lead to intricate migration networks, theoretical developments have focused mainly on a small subset of such networks, emphasizing the island-migration and stepping-stone models. In this study, we investigate all small network motifs: the set of all possible migration networks among populations subdivided into at most four subpopulations. For each motif, we use coalescent theory to derive expectations for three quantities that describe genetic variation: nucleotide diversity, FST, and half-time to equilibrium diversity. We describe the impact of network properties on these quantities, finding that motifs with a high mean node degree have the largest nucleotide diversity and the longest time to equilibrium, whereas motifs with low density have the largest FST. In addition, we show that the motifs whose pattern of variation is most strongly influenced by loss of a connection or a subpopulation are those that can be split easily into disconnected components. We illustrate our results using two example data sets—sky island birds of genus Sholicola and Indian tigers—identifying disturbance scenarios that produce the greatest reduction in genetic diversity; for tigers, we also compare the benefits of two assisted gene flow scenarios. Our results have consequences for understanding the effect of geography on genetic diversity, and they can assist in designing strategies to alter population migration networks toward maximizing genetic variation in the context of conservation of endangered species.

There Is No Evidence of Geographical Patterning among Invasive Kentucky Bluegrass (Poa pratensis) Populations in the Northern Great Plains

Weed Science ◽  
2016 ◽  
Vol 64 (3) ◽  
pp. 409-420 ◽  
Author(s):  
Lauren A. Dennhardt ◽  
Edward S. DeKeyser ◽  
Sarah A. Tennefos ◽  
Steven E. Travers
Keyword(s):  
Genetic Diversity ◽  
Great Plains ◽  
Propagule Pressure ◽  
Poa Pratensis ◽  
Natural Populations ◽  
Kentucky Bluegrass ◽  
Grass Species ◽  
Northern Great Plains ◽  
Wild Populations ◽  
High Genetic Diversity

The study of colonizing and of dominant grass species is essential for prairie conservation efforts. We sought to answer how naturalized Kentucky bluegrass in the northern Great Plains has become successful in the last 20 yr despite its long history in the northern Great Plains. We tested for evidence of geographical differentiation using flow cytometry and microsatellite markers to ascertain the population genetics of Kentucky bluegrass. Across all tested wild populations, high levels of genetic diversity were detected along with moderate levels of structure. Mantel tests of geographical patterns were not significant. Using clonal assignment, we found two major clones that made up the majority of the tested wild populations. When we compared the wild individuals to pedigree cultivars, we found virtually no genetic overlap across all tests, which did not support our hypothesis of developed cultivars contributing to high genetic diversity in natural populations. Furthermore, DNA content tests indicated a narrow range in ploidy in wild populations compared with lawn cultivars, further supporting a hypothesis of divergence between wild and pedigree cultivars. These results indicate the recent invasion of Kentucky bluegrass in the northern Great Plains is not because of adaptation or propagule pressure, but rather likely an environmental or land use shift.

scholarly journals Impacts of dams on freshwater turtles: a global review to identify conservation solutions

2021 ◽  
Author(s):  
Andrea Barcenas-Garcia ◽  
Fernanda Michalski ◽  
William H. Morgan ◽  
Rebecca K. Smith ◽  
William J. Sutherland ◽  
...  
Keyword(s):  
Freshwater Ecosystems ◽  
Freshwater Turtle ◽  
Tropical Species ◽  
Life History Stage ◽  
Freshwater Turtles ◽  
Tropical Regions ◽  
Turtle Species ◽  
Threat Status ◽  
Dam Impacts ◽  
The Impact

Dams create many impacts on freshwater ecosystems and biodiversity. Freshwater turtles are at direct and indirect risk due to changes caused by damming including the loss of terrestrial and aquatic nesting and feeding habitats, changes to resource availability and reduced dispersal. We reviewed the global scientific literature that evaluated the impact of dams on freshwater turtles, and carried out additional searches of literature published in seventeen languages for studies evaluating actions to mitigate the impact of dams. The search produced 43 published articles documenting dam impacts on 29 freshwater turtle species from seven families (Chelidae, Chelydridae, Emydidae, Geoemydidae, Kinosternidae, Podocnemididae and Trionychidae) in 13 countries. More than a third of studies (41.9%, n = 18) focused on nine North American species of the Emydidae. Few studies were found from Europe and Asia and none from Africa. The number of studies, life-history stage studied and threat status differed significantly between temperate and tropical latitudes. Most studies were from temperate latitudes, where studies focused more on adults and less threatened species compared with tropical latitudes. Studies evaluated dam impacts as barriers and changes to water flow and quality, but no studies were found that assessed turtles and changes to land cover or mercury caused by dams. More than half of the studies (59%, n = 24) suggested actions to help mitigate dam impacts. Yet, only four studies on three temperate and one tropical species documented the effect of interventions (dam removal, flow management, artificial pond maintenance and community-based action). These findings demonstrate a lack of documented evidence evaluating dam impacts on freshwater turtles particularly in tropical regions. This lack of evidence reinforces the importance of strengthening and maintaining robust long-term studies of freshwater turtles needed to develop effective conservation actions for this group of vertebrates.

scholarly journals Evaluating the Impact of Wildlife Shelter Management on the Genetic Diversity of Erinaceus europaeus and E. roumanicus in Their Contact Zone

Animals ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 1452 ◽  
Author(s):  
Kerstin Ploi ◽  
Manuel Curto ◽  
Barbora Černá Bolfíková ◽  
Miroslava Loudová ◽  
Pavel Hulva ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Geographical Area ◽  
Abundant Species ◽  
Wild Populations ◽  
Erinaceus Europaeus ◽  
Dispersal Barrier ◽  
Distance Analysis ◽  
Genetic Impact ◽  
Potential Impact ◽  
The Impact

Hedgehogs are among the most abundant species to be found within wildlife shelters and after successful rehabilitation they are frequently translocated. The effects and potential impact of these translocations on gene flow within wild populations are largely unknown. In this study, different wild hedgehog populations were compared with artificially created “shelter populations”, with regard to their genetic diversity, in order to establish basic data for future inferences on the genetic impact of hedgehog translocations. Observed populations are located within central Europe, including the species Erinaceus europaeus and E. roumanicus. Shelters were mainly hosting one species; in one case, both species were present syntopically. Apart from one exception, the results did not show a higher genetic diversity within shelter populations, indicating that individuals did not originate from a wider geographical area than individuals grouped into one of the wild populations. Two shelters from Innsbruck hosted individuals that belonged to two potential clusters, as indicated in a distance analysis. When such a structure stems from the effects of landscape elements like large rivers, the shelter management-related translocations might lead to homogenization across the dispersal barrier.

scholarly journals Genetic Structure and Pod Morphology of Inga edulis Cultivated vs. Wild Populations from the Peruvian Amazon

Forests ◽  
2020 ◽  
Vol 11 (6) ◽  
pp. 655 ◽  
Author(s):  
Alexandr Rollo ◽  
Maria M. Ribeiro ◽  
Rita L. Costa ◽  
Carmen Santos ◽  
Zoyla M. Clavo P. ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Ice Cream ◽  
Peruvian Amazon ◽  
Wild Populations ◽  
Inga Edulis ◽  
Loss Of Genetic Diversity ◽  
Cultivated Populations ◽  
The Impact ◽  
Pod Length

Research Highlights: This study assesses the genetic diversity and structure of the ice-cream-bean (Inga edulis Mart.; Fabaceae) in wild and cultivated populations from the Peruvian Amazon. This research also highlights the importance of protecting the biodiversity of the forest in the Peruvian Amazon, to preserve the genetic resources of species and allow further genetic improvement. Background and Objectives: Ice-cream-bean is one of the most commonly used species in the Amazon region for its fruits and for shading protection of other species (e.g., cocoa and coffee plantations). Comprehensive studies about the impact of domestication on this species’ genetic diversity are needed, to find the best conservation and improvement strategies. Materials and Methods: In the current study, the genetic structure and diversity were assessed by genotyping 259 trees, sampled in five wild and 22 cultivated I. edulis populations in the Peruvian Amazon, with microsatellite markers. Pod length was measured in wild and cultivated trees. Results: The average pod length in cultivated trees was significantly higher than that in wild trees. The expected genetic diversity and the average number of alleles was higher in the wild compared to the cultivated populations; thus, a loss of genetic diversity was confirmed in the cultivated populations. The cultivated trees in the Loreto region had the highest pod length and lowest allelic richness; nevertheless, the wild populations’ genetic structure was not clearly differentiated (significantly different) from that of the cultivated populations. Conclusions: A loss of genetic diversity was confirmed in the cultivated populations. The species could have been simultaneously domesticated in multiple locations, usually from local origin. The original I. edulis Amazonian germplasm should be maintained. Cultivated populations’ new germplasm influx from wild populations should be undertaken to increase genetic diversity.

Genetic Diversity and Environmental Future

1978 ◽  
Vol 5 (2) ◽  
pp. 127-132 ◽  
Author(s):  
Gabor Vida
Keyword(s):  
Genetic Diversity ◽  
Natural Selection ◽  
Human Population ◽  
Natural Populations ◽  
Wild Populations ◽  
Modern Agriculture ◽  
Total Genetic Diversity ◽  
Enormous Amount ◽  
Suitable Amount ◽  
Historical Times

Increasing evidence indicates that a major portion of the enormous amount of polymorphism present in natural populations is maintained by natural selection. This polymorphism is necessary for adaptation. In the absence of a suitable amount of genetic diversity, a species will tend to die out in a changing environment.The genetic diversity of most species has been considerably reduced in historical times. Breeding for uniformity, and reduction in the number and size of wild populations, are largely responsible for this loss. Replacement of a natural forest ecosystem by modern agriculture reduces the genetic diversity by three orders of magnitude at the very least. A comparison of the estimated prehistoric and present amount of genetic diversity leads to the alarming conclusion that we may already have lost as much as 90% of the total genetic diversity of the biosphere. Further loss is expected because of the rapid growth of human population.

scholarly journals Genetic management on the brink of extinction: sequencing microsatellites does not improve estimates of inbreeding in wild and captive Vancouver Island marmots (Marmota vancouverensis)

2022 ◽  
Author(s):  
Kimberley G. Barrett ◽  
Geneviève Amaral ◽  
Melanie Elphinstone ◽  
Malcolm L. McAdie ◽  
Corey S. Davis ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Captive Breeding ◽  
Amplicon Sequencing ◽  
Vancouver Island ◽  
Wild Populations ◽  
Genetic Management ◽  
Captive Breeding Program ◽  
Increased Risk ◽  
Low Diversity

AbstractCaptive breeding is often a last resort management option in the conservation of endangered species which can in turn lead to increased risk of inbreeding depression and loss of genetic diversity. Thus, recording breeding events via studbook for the purpose of estimating relatedness, and facilitating mating pair selection to minimize inbreeding, is common practice. However, as founder relatedness is often unknown, loss of genetic variation and inbreeding cannot be entirely avoided. Molecular genotyping is slowly being adopted in captive breeding programs, however achieving sufficient resolution can be challenging in small, low diversity, populations. Here, we evaluate the success of the Vancouver Island marmot (Marmota vancouverensis; VIM; among the worlds most endangered mammals) captive breeding program in preventing inbreeding and maintaining genetic diversity. We explored the use of high-throughput amplicon sequencing of microsatellite regions to assay greater genetic variation in both captive and wild populations than traditional length-based fragment analysis. Contrary to other studies, this method did not considerably increase diversity estimates, suggesting: (1) that the technique does not universally improve resolution, and (2) VIM have exceedingly low diversity. Studbook estimates of pairwise relatedness and inbreeding in the current population were weakly, but positively, correlated to molecular estimates. Thus, current studbooks are moderately effective at predicting genetic similarity when founder relatedness is known. Finally, we found that captive and wild populations did not differ in allelic frequencies, and conservation efforts to maintain diversity have been successful with no significant decrease in diversity over the last three generations.

scholarly journals Coalescent theory of migration network motifs

2017 ◽  
Author(s):  
Nicolas Alcala ◽  
Amy Goldberg ◽  
Uma Ramakrishnan ◽  
Noah A. Rosenberg
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Nucleotide Diversity ◽  
Natural Populations ◽  
Node Degree ◽  
Small Subset ◽  
Network Motifs ◽  
Coalescent Theory ◽  
Migration Networks ◽  
The Impact

ABSTRACTNatural populations display a variety of spatial arrangements, each potentially with a distinctive impact on genetic diversity and genetic differentiation among subpopulations. Although the spatial arrangement of populations can lead to intricate migration networks, theoretical developments have focused mainly on a small subset of such networks, emphasizing the island-migration and stepping-stone models. In this study, we investigate all small network motifs: the set of all possible migration networks among populations subdivided into at most four subpopulations. For each motif, we use coalescent theory to derive expectations for three quantities that describe genetic variation: nucleotide diversity, FST, and half-time to equilibrium diversity. We describe the impact of network properties on these quantities, finding that motifs with a large mean node degree have the largest nucleotide diversity and the longest time to equilibrium, whereas motifs with small density have the largest FST. In addition, we show that the motifs whose pattern of variation is most strongly influenced by loss of a connection or a subpopulation are those that can be split easily into several disconnected components. We illustrate our results using two example datasets—sky island birds of genus Brachypteryx and Indian tigers—identifying disturbance scenarios that produce the greatest reduction in genetic diversity; for tigers, we also compare the benefits of two assisted gene flow scenarios. Our results have consequences for understanding the effect of geography on genetic diversity and for designing strategies to alter population migration networks to maximize genetic variation in the context of conservation of endangered species.

Sign in / Sign up

Export Citation Format

Share Document