scholarly journals Mutualistic relationship between Nitrospira and concomitant heterotrophs

Author(s):  
Chiho Murakami ◽  
Koshi Machida ◽  
Yoichi Nakao ◽  
Tomonori Kindaichi ◽  
Akiyoshi Ohashi ◽  
...  
Author(s):  
Kaat Schroven ◽  
Abram Aertsen ◽  
Rob Lavigne

ABSTRACT Bacteria-infecting viruses (phages) and their hosts maintain an ancient and complex relationship. Bacterial predation by lytic phages drives an ongoing phage-host arms race, whereas temperate phages initiate mutualistic relationships with their hosts upon lysogenization as prophages. In human pathogens, these prophages impact bacterial virulence in distinct ways: by secretion of phage-encoded toxins, modulation of the bacterial envelope, mediation of bacterial infectivity and the control of bacterial cell regulation. This review builds the argument that virulence-influencing prophages hold extensive, unexplored potential for biotechnology. More specifically, it highlights the development potential of novel therapies against infectious diseases, to address the current antibiotic resistance crisis. First, designer bacteriophages may serve to deliver genes encoding cargo proteins which repress bacterial virulence. Secondly, one may develop small molecules mimicking phage-derived proteins targeting central regulators of bacterial virulence. Thirdly, bacteria equipped with phage-derived synthetic circuits which modulate key virulence factors could serve as vaccine candidates to prevent bacterial infections. The development and exploitation of such antibacterial strategies will depend on the discovery of other prophage-derived, virulence control mechanisms and, more generally, on the dissection of the mutualistic relationship between temperate phages and bacteria, as well as on continuing developments in the synthetic biology field.


Nutrients ◽  
2021 ◽  
Vol 13 (5) ◽  
pp. 1506
Author(s):  
Annamaria Altomare ◽  
Claudia Di Rosa ◽  
Elena Imperia ◽  
Sara Emerenziani ◽  
Michele Cicala ◽  
...  

Irritable Bowel Syndrome (IBS) is a chronic functional gastrointestinal disorder characterized by abdominal pain associated with defecation or a change in bowel habits. Gut microbiota, which acts as a real organ with well-defined functions, is in a mutualistic relationship with the host, harvesting additional energy and nutrients from the diet and protecting the host from pathogens; specific alterations in its composition seem to play a crucial role in IBS pathophysiology. It is well known that diet can significantly modulate the intestinal microbiota profile but it is less known how different nutritional approach effective in IBS patients, such as the low-FODMAP diet, could be responsible of intestinal microbiota changes, thus influencing the presence of gastrointestinal (GI) symptoms. The aim of this review was to explore the effects of different nutritional protocols (e.g., traditional nutritional advice, low-FODMAP diet, gluten-free diet, etc.) on IBS-D symptoms and on intestinal microbiota variations in both IBS-D patients and healthy subjects. To date, an ideal nutritional protocol does not exist for IBS-D patients but it seems crucial to consider the effect of the different nutritional approaches on the intestinal microbiota composition to better define an efficient strategy to manage this functional disorder.


2016 ◽  
Vol 82 (13) ◽  
pp. 3698-3710 ◽  
Author(s):  
Florence Mus ◽  
Matthew B. Crook ◽  
Kevin Garcia ◽  
Amaya Garcia Costas ◽  
Barney A. Geddes ◽  
...  

ABSTRACTAccess to fixed or available forms of nitrogen limits the productivity of crop plants and thus food production. Nitrogenous fertilizer production currently represents a significant expense for the efficient growth of various crops in the developed world. There are significant potential gains to be had from reducing dependence on nitrogenous fertilizers in agriculture in the developed world and in developing countries, and there is significant interest in research on biological nitrogen fixation and prospects for increasing its importance in an agricultural setting. Biological nitrogen fixation is the conversion of atmospheric N2to NH3, a form that can be used by plants. However, the process is restricted to bacteria and archaea and does not occur in eukaryotes. Symbiotic nitrogen fixation is part of a mutualistic relationship in which plants provide a niche and fixed carbon to bacteria in exchange for fixed nitrogen. This process is restricted mainly to legumes in agricultural systems, and there is considerable interest in exploring whether similar symbioses can be developed in nonlegumes, which produce the bulk of human food. We are at a juncture at which the fundamental understanding of biological nitrogen fixation has matured to a level that we can think about engineering symbiotic relationships using synthetic biology approaches. This minireview highlights the fundamental advances in our understanding of biological nitrogen fixation in the context of a blueprint for expanding symbiotic nitrogen fixation to a greater diversity of crop plants through synthetic biology.


Symbiosis ◽  
2021 ◽  
Author(s):  
Guillaume Caulier ◽  
Jean-François Hamel ◽  
Edward A. Hendrycks ◽  
Kathleen E. Conlan ◽  
Annie Mercier

Animals ◽  
2022 ◽  
Vol 12 (2) ◽  
pp. 145
Author(s):  
Małgorzata Gieryńska ◽  
Lidia Szulc-Dąbrowska ◽  
Justyna Struzik ◽  
Matylda Barbara Mielcarska ◽  
Karolina Paulina Gregorczyk-Zboroch

The gastrointestinal tract, which is constantly exposed to a multitude of stimuli, is considered responsible for maintaining the homeostasis of the host. It is inhabited by billions of microorganisms, the gut microbiota, which form a mutualistic relationship with the host. Although the microbiota is generally recognized as beneficial, at the same time, together with pathogens, they are a permanent threat to the host. Various populations of epithelial cells provide the first line of chemical and physical defense against external factors acting as the interface between luminal microorganisms and immunocompetent cells in lamina propria. In this review, we focus on some essential, innate mechanisms protecting mucosal integrity, thus responsible for maintaining intestine homeostasis. The characteristics of decisive cell populations involved in maintaining the barrier arrangement, based on mucus secretion, formation of intercellular junctions as well as production of antimicrobial peptides, responsible for shaping the gut microbiota, are presented. We emphasize the importance of cross-talk between gut microbiota and epithelial cells as a factor vital for the maintenance of the homeostasis of the GI tract. Finally, we discuss how the imbalance of these regulations leads to the compromised barrier integrity and dysbiosis considered to contribute to inflammatory disorders and metabolic diseases.


2018 ◽  
Vol 33 (3) ◽  
pp. 73-91
Author(s):  
Hwang Inyoung ◽  
Park J. Hun

South Korea, China, and Japan are three dominant countries in the global shipbuilding industry, and the competition between them has become more complex over time. The International Maritime Organization environmental regulations and the wave of Industry 4.0 have made the global shipbuilding industry more technology intensive than before. However, after the financial crisis of 2008, China’s labor-intensive strategy outperformed the technology-intensive competitive strategy adopted by Japan and South Korea, and China was ranked first with the largest market share. This study sets out to explore whether China’s labor-intensive strategy will remain superior to the technology-intensive one of Japan and South Korea. Specifically, we investigate how competitive relationships between the three countries changed after the 2008 global financial crisis. We also forecast how many ships each country will complete in through 2026. To analyze this dynamic competitive system, we use the three-dimensional Lotka-Volterra model, drawing on annual data reporting the number of ships built. The findings suggest that China has gained a competitive advantage over Japan since the 2008 global financial crisis, while South Korea has maintained a mutualistic relationship with both Japan and China. Our forecast suggests that China may lose its competitive advantage in the near future, if China does not embrace a more technology-intensive approach.


2021 ◽  
Author(s):  
Yu Pei ◽  
Jan-peter Duda ◽  
Jan Schoenig ◽  
Cui Luo ◽  
Joachim Reitner

The so-called Permian — Triassic mass extinction was followed by a prolonged period of ecological recovery that lasted until the Middle Triassic. Triassic stromatolites from the Germanic Basin seem to be an important part of the puzzle, but have barely been investigated so far. Here we analyzed late Anisian (upper Middle Muschelkalk) stromatolites from across the Germanic Basin by combining petrographic approaches (optical microscopy, micro X-ray fluorescence, Raman imaging) and geochemical analyses (sedimentary hydrocarbons, stable carbon and oxygen isotopes). Paleontological and sedimentological evidence, such as Placunopsis bivalves, intraclasts and disrupted laminated fabrics, indicate that the stromatolites formed in subtidal, shallow marine settings. This interpretation is consistent with δ13Ccarb of about -2.1 % to -0.4 %. Occurrences of calcite pseudomorphs after gypsum suggest slightly evaporitic environments, which is well in line with the relative rarity of fossils in the host strata. Remarkably, the stromatolites are composed of microbes (perhaps cyanobacteria and sulfate reducing bacteria) and metazoans such as non-spicular demosponges, Placunopsis bivalves, and/or Spirobis-like worm tubes. Therefore, these ″stromatolites″ should more correctly be referred to as microbe-metazoan build-ups. They are characterized by diverse lamination types, including planar, wavy, domal and conical ones. Microbial mats likely played an important role in forming the planar and wavy laminations. Domal and conical laminations commonly show clotted to peloidal features and mesh-like fabrics, attributed to fossilized non-spicular demosponges. Our observations not only point up that non-spicular demosponges are easily overlooked and might be mistakenly interpreted as stromatolites, but also demonstrate that microbe-metazoan build-ups were widespread in the Germanic Basin during Early to Middle Triassic times. In the light of our findings, it appears plausible that the involved organisms benefited from elevated salinities. Another (not necessarily contradictory) possibility is that the mutualistic relationship between microbes and non-spicular demosponges enabled these organisms to fill ecological niches cleared by the Permian — Triassic Crisis. If that is to be the case, it means that such microbe-metazoan associations maintained their advantage until the Middle Triassic.


2020 ◽  
Author(s):  
Yi Lan ◽  
Jin Sun ◽  
Chong Chen ◽  
Yanan Sun ◽  
Yadong Zhou ◽  
...  

AbstractAnimals endemic to deep-sea hydrothermal vents often form obligatory relationships with bacterial symbionts, maintained by intricate host-symbiont interactions. Endosymbiosis with more than one symbiont is uncommon, and most genomic studies focusing on such ‘dual symbiosis’ systems have not investigated the host and the symbionts to a similar depth simultaneously. Here, we report a novel dual symbiosis among the peltospirid snail Gigantopelta aegis and its two Gammaproteobacteria endosymbionts – one being a sulphur oxidiser and the other a methane oxidiser. We assembled high-quality genomes for all three parties of this holobiont, with a chromosome-level assembly for the snail host (1.15 Gb, N50 = 82 Mb, 15 pseudo-chromosomes). In-depth analyses of these genomes reveal an intimate mutualistic relationship with complementarity in nutrition and metabolic codependency, resulting in a system highly versatile in transportation and utilisation of chemical energy. Moreover, G. aegis has an enhanced immune capability that likely facilitates the possession of more than one type of symbiont. Comparisons with Chrysomallon squamiferum, another chemosymbiotic snail in the same family but only with one sulphur-oxidising endosymbiont, show that the two snails’ sulphur-oxidising endosymbionts are phylogenetically distant, agreeing with previous results that the two snails have evolved endosymbiosis independently and convergently. Notably, the same capabilities of biosynthesis of specific nutrition lacking in the host genome are shared by the two sulphur-oxidising endosymbionts of the two snail genera, which may be a key criterion in the selection of symbionts by the hosts.


2020 ◽  
Vol 145 (2) ◽  
Author(s):  
Loïc N. Michel ◽  
Patrick Dauby ◽  
Alessandra Dupont ◽  
Sylvie Gobert

Mediterranean Posidonia oceanica meadows shelter an important biomass and biodiversity of amphipod crustaceans that graze on epiphytes. However, their actual significance for ecosystem functional processes is hard to estimate, due to the lack of adequate data. Here, a field microcosm-based inclusion experiment was used to test if three of the dominant taxa of the amphipod community (Apherusa chiereghinii, Dexamine spiniventris and Gammarus spp.) could exert top-down control on seagrass leaf epiphytes. Influence of amphipod activity on nutrient availability for the host species was also investigated. All grazer taxa significantly reduced biomasses of erect macroalgae and erect sessile animals present on leaves. None of them consumed encrusting epiflora or epifauna. This selective top-down control could have important implications for the structure of the epiphytic community on leaves of P. oceanica, which is one of the most diverse and abundant of all seagrass species. Grazing activity of all taxa caused higher N content of seagrass leaves, likely through amphipod excretion and/or sloppy feeding. Since P. oceanica meadows often grow in oligotrophic zones where plant growth can be nutrient-limited, this N enrichment could enhance seagrass production. Overall, the ecological interaction between P. oceanica and amphipods could be seen as a facultative mutualistic relationship. Our results suggest that amphipod mesograzers are key-elements in some of the functional processes regulating these complex and yet endangered ecosystems, which are essential components of Mediterranean coastal zones.


2015 ◽  
Author(s):  
R. Carlos Almazán-Núñez ◽  
Luis E. Eguiarte ◽  
María del Coro Arizmendi ◽  
Pablo Corcuera

We evaluated the seed dispersal of Bursera longipes by birds along a successional gradient of tropical dry forest (TDF) in southwestern Mexico. B. longipes is an endemic tree to the TDF in the Balsas basin. The relative abundance of frugivorous birds, their frequency of visits to B. longipes and the number of removed fruits were recorded at three study sites with different stages of forest succession (early, intermediate and mature) characterized by distinct floristic and structural elements. Flycatchers of the Myiarchus and Tyrannus genera removed the majority of fruits at each site. Overall, visits to B. longipes were less frequent at the early successional site. Birds that function as legitimate dispersers by consuming whole seeds and regurgitating or defecating intact seeds in the process also remove the pseudoaril from seeds, thereby facilitating the germination process. The highest germination percentages were recorded for seeds that passed through the digestive tract of two migratory flycatchers: M. cinerascens and M. nutingii. Perch plants, mainly composed of legumes (e.g., Eysenhardtia polystachya, Acacia cochliacantha, Calliandra eryophylla, Mimosa polyantha), serve also as nurse plants since the number of young individuals recruited from B. longipes was higher under these than expected by chance. This study shows that Myiarchus flycatchers are the most efficient seed dispersers of B. longipes across all successional stages. This suggests a close mutualistic relationship derived from adaptive processes and local specializations throughout the distribution of both taxa, as supported by the geographic mosaic theory of coevolution.


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