MYB gene family in diatom Phaeodactylum tricornutum revealing their potential functions in the adaption to nitrogen deficiency and diurnal cycle

2021 ◽  
Author(s):  
Wanna Wang ◽  
Hao Fang ◽  
Muhmmad Aslam ◽  
Hong Du ◽  
Jichen Chen ◽  
...  
2019 ◽  
Vol 20 (19) ◽  
pp. 4847 ◽  
Author(s):  
Wenjun Sun ◽  
Zhaotang Ma ◽  
Hui Chen ◽  
Moyang Liu

As an important nongrain crop, the growth and yield of potato (Solanum tuberosum L.) is often affected by an unfavorable external environment in the process of cultivation. The MYB family is one of the largest and most important gene families, participating in the regulation of plant growth and development and response to abiotic stresses. Several MYB genes in potato that regulate anthocyanin synthesis and participate in abiotic stress responses have been identified. To identify all Solanum tuberosum L. MYB (StMYB) genes involved in hormone or stress responses to potentially regulate potato growth and development, we identified the MYB gene family at the genome-wide level. In this work, 158 StMYB genes were found in the potato genome. According to the amino acid sequence of the MYB domain and gene structure, the StMYB genes were divided into R2R3-MYB and R1R2R3-MYB families, and the R2R3-MYB family was divided into 20 subgroups (SGs). The expression of 21 StMYB genes from different SGs in roots, stems, leaves, flowers, shoots, stolons, young tubers, and mature tubers was determined by quantitative real-time polymerase chain reaction (qRT-PCR). The expression patterns of StMYB genes in potatoes treated with abscisic acid (ABA), indole-3-acetic acid (IAA), gibberellin acid 3 (GA3), NaCl, mannitol, and heat were also measured. We have identified several potential candidate genes that regulate the synthesis of potato flavonoids or participate in hormone or stress responses. This work provides a comprehensive understanding of the MYB family in potato and will lay a foundation for the future investigation of the potential functions of StMYB genes in the growth and development of potato.


2021 ◽  
Vol 35 (1) ◽  
pp. 517-526
Author(s):  
Cai-hua Li ◽  
Qing-xi Fang ◽  
Wen-Jing Zhang ◽  
Yu-huan Li ◽  
Jin-zhu Zhang ◽  
...  

Author(s):  
Burcu Ak ◽  
Gökhan Tamer Kayaalp ◽  
Oya Işık ◽  
Melis Çelik Güney

Phaeodactylum tricornutum is the microalgae that is known to produce lipid. In this study, it was aimed to estimate the microalgae Phaeodactylum tricornutum dry matter cultured in the conditions of nitrogen deficiency as a stress factor, in outdoor, in photo bioreactors, by using multiple regression analysis method. In this study, diatom Phaeodactylum tricornutum (Bohlin) was cultured medium of which N was reduced by 50% and with 20% inoculation ratio. The light intensity, temperature, optical density and chlorophyll a, were measured daily. The mathematical model was formed for control group and 50 % of the N applied to the group using optical density, temperature, light intensity, chlorophyll a and without chlorophyll a. The regression equation of control group was estimated. The R2 value of control group was found 95.1% and statistically significant. Then, the regression equation was estimated for control group without chlorophyll a. The R2 value of this equation was found 94.0% and statistically significant. And then, the regression equation was estimated in 50% nitrogen. The R2 value of control group was found 92.4% and statistically significant. Finally, the regression equation was estimated in 50% nitrogen deficiency without chlorophyll a. The R2 value of this equation was found 91.7% and statistically significant.


2005 ◽  
Vol 16 (10) ◽  
pp. 4705-4713 ◽  
Author(s):  
Toshihiro Kurahashi ◽  
Teruaki Nomura ◽  
Chie Kanei-Ishii ◽  
Yoichi Shinkai ◽  
Shunsuke Ishii

The c-myb proto-oncogene product (c-Myb) regulates proliferation and differentiation of hematopoietic cells. Recently we have shown that c-Myb is degraded in response to Wnt-1 stimulation via a pathway involving TAK1 (TGF-β-activated kinase), HIPK2 (homeodomain-interacting protein kinase 2), and NLK (Nemo-like kinase). NLK and HIPK2 bind directly to c-Myb and phosphorylate c-Myb at multiple sites, inducing its ubiquitination and proteasome-dependent degradation. The mammalian myb gene family contains two members in addition to c-myb, A-myb, and B-myb. Here, we report that the Wnt-NLK pathway also inhibits A-Myb activity, but by a different mechanism. As in the case of c-Myb, both NLK and HIPK2 bound directly to A-Myb and inhibited its activity. NLK phosphorylated A-Myb, but did not induce A-Myb degradation. Overexpression of NLK inhibited the association between A-Myb and the coactivator CBP, thus, blocking A-Myb-induced trans-activation. The kinase activity of NLK is required for the efficient inhibition of the association between A-Myb and CBP, although the kinase-negative form of NLK also partly inhibits the interaction between A-Myb and CBP. Furthermore, NLK induced the methylation of histone H3 at lysine-9 at A-Myb-bound promoter regions. Thus, the Wnt-NLK pathway inhibits the activity of each Myb family member by different mechanisms.


Genes ◽  
2017 ◽  
Vol 8 (12) ◽  
pp. 362 ◽  
Author(s):  
Marie Mmadi ◽  
Komivi Dossa ◽  
Linhai Wang ◽  
Rong Zhou ◽  
Yanyan Wang ◽  
...  

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