scholarly journals Contrasting microbiome dynamics of putative denitrifying bacteria in two octocoral species exposed to dissolved organic carbon (DOC) and warming

2021 ◽  
Author(s):  
Nan Xiang ◽  
Christiane Hassenrück ◽  
Claudia Pogoreutz ◽  
Nils Rädecker ◽  
Susana Marcela Simancas-Giraldo ◽  
...  
Keyword(s):  
Microbial Community ◽  
Organic Carbon ◽  
Nutritional Status ◽  
Dissolved Organic Carbon ◽  
Bacterial Communities ◽  
Community Dynamics ◽  
Soft Coral ◽  
N Cycling ◽  
N Availability ◽  
Coral Holobiont

Mutualistic nutrient cycling in the coral-algae symbiosis depends on limited nitrogen (N) availability for algal symbionts. Denitrifying prokaryotes capable of reducing nitrate or nitrite to dinitrogen could thus support coral holobiont functioning by limiting N availability. Octocorals show some of the highest denitrification rates among reef organisms, however little is known about the community structures of associated denitrifiers and their response to environmental fluctuations. Combining 16S rRNA gene amplicon sequencing with nirS in-silico PCR and quantitative PCR, we found differences in bacterial community dynamics between two octocorals exposed to excess dissolved organic carbon (DOC) and concomitant warming. While bacterial communities of the gorgonian Pinnigorgia flava remained largely unaffected by DOC and warming, the soft coral Xenia umbellata exhibited a pronounced shift towards Alphaproteobacteria dominance under excess DOC. Likewise, the relative abundance of denitrifiers was not altered in P. flava , but decreased by one order of magnitude in X. umbellata under excess DOC likely due to decreased proportions of Ruegeria spp. Given that holobiont C:N ratios remained stable in P. flava but showed a pronounced increase with excess DOC in X. umbellata host, our results suggest that microbial community dynamics may reflect the nutritional status of the holobiont. Hence, denitrifier abundance may be directly linked to N availability. This suggests a passive regulation of N cycling microbes, which could help stabilize nutrient limitation in the coral-algal symbiosis and thereby support holobiont functioning in a changing environment. Importance Octocorals are important members of reef-associated benthic communities that can rapidly replace scleractinian corals as the dominant ecosystem engineers on degraded reefs. Considering the substantial change in the (a)biotic environment that is commonly driving reef degradation, maintaining a dynamic and metabolically diverse microbial community might contribute to octocoral acclimatization and ecological adaptation. Nitrogen (N) cycling microbes, in particular denitrifying prokaryotes, may support holobiont functioning by limiting internal N availability, but little is known about the identity and (a)biotic drivers of octocoral-associated denitrifiers. Here, we show contrasting dynamics of bacterial communities associated with two common octocoral species, the soft coral Xenia umbellata and the gorgonian Pinnigorgia flava after a six-week exposure to excess dissolved organic carbon (DOC) under concomitant warming conditions. The specific responses of denitrifier communities associated with the two octocoral species aligned with the nutritional status of holobiont members. This suggests a passive regulation of this microbial trait based on N availability in the coral holobiont.

Carbocentric limnology: looking back, looking forward

2008 ◽  
Vol 65 (3) ◽  
pp. 543-548 ◽  
Author(s):  
Yves T Prairie
Keyword(s):  
Carbon Dioxide ◽  
Organic Matter ◽  
Microbial Community ◽  
Organic Carbon ◽  
Dissolved Organic Carbon ◽  
Carbon Budget ◽  
Metabolic Balance ◽  
Lake Ecosystems ◽  
Looking Back ◽  
Landscape Level

In this perspective article, I argue that dissolved organic carbon occupies a central role in the functioning of lake ecosystems, comparable in importance to that played by nutrients. Because lakes receive so much dissolved organic carbon from the terrestrial landscape, its accumulation in water bodies usually represents the largest pool of lacustrine organic matter within the water column. The transformation of even a small fraction of this external carbon by the microbial community can alter significantly the metabolic balance of lake ecosystems, simultaneously releasing carbon dioxide to the atmosphere and burying organic carbon in lake sediments. At the landscape level, even if they occupy a small fraction of the landscape, lakes play a surprisingly important role in the regional carbon budget, particularly when considered at the appropriate temporal scale.

scholarly journals Carbon losses from pyrolysed and original wood in a forest soil under natural and increased N deposition

2014 ◽  
Vol 11 (18) ◽  
pp. 5199-5213 ◽  
Author(s):  
B. Maestrini ◽  
S. Abiven ◽  
N. Singh ◽  
J. Bird ◽  
M. S. Torn ◽  
...  
Keyword(s):  
Organic Carbon ◽  
Dissolved Organic Carbon ◽  
Forest Soil ◽  
N Deposition ◽  
Main Process ◽  
N Availability ◽  
N Losses ◽  
Mineral N ◽  
C Cycling ◽  
Carbon Losses

Abstract. Pyrogenic organic matter (PyOM) plays an important role as a stable carbon (C) sink in the soils of terrestrial ecosystems. However, uncertainties remain about in situ turnover rates of fire-derived PyOM in soil, the main processes leading to PyOM-C and nitrogen (N) losses from the soil, and the role of N availability on PyOM cycling in soils. We measured PyOM and native soil organic carbon losses from the soil as carbon dioxide and dissolved organic carbon (DOC) using additions of highly 13C-labelled PyOM (2.03 atom %) and its precursor pinewood during 1 year in a temperate forest soil. The field experiment was carried out under ambient and increased mineral N deposition (+60 kg N-NH4NO3 ha−1 year−1). The results showed that after 1 year: (1) 0.5% of PyOM-C and 22% of wood-C were mineralized as CO2, leading to an estimated turnover time of 191 and 4 years, respectively; (2) the quantity of PyOM and wood lost as dissolved organic carbon was negligible (0.0004 ± 0.0003% and 0.022 ± 0.007% of applied-C, respectively); and (3) N additions decreased cumulative PyOM mineralization by 43%, but did not affect cumulative wood mineralization and did not affect the loss of DOC from PyOM or wood. We conclude that mineralization to CO2 was the main process leading to PyOM losses during the first year of mineralization in a forest soil, and that N addition can decrease PyOM-C cycling, while added N showed no effect on wood C cycling.

scholarly journals Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5984 ◽  
Author(s):  
Nataly Carolina Guevara Campoverde ◽  
Christiane Hassenrück ◽  
Pier Luigi Buttigieg ◽  
Astrid Gärdes
Keyword(s):  
Organic Carbon ◽  
Carbon Cycle ◽  
Dissolved Organic Carbon ◽  
Bacterial Communities ◽  
Carbon Pools ◽  
Aggregate Formation ◽  
Galapagos Archipelago ◽  
Carbon Concentrations ◽  
Bacterioplankton Communities

Bacteria play a crucial role in the marine carbon cycle, contributing to the production and degradation of organic carbon. Here, we investigated organic carbon pools, aggregate formation, and bacterioplankton communities in three contrasting oceanographic settings in the Galapagos Archipelago. We studied a submarine CO2 vent at Roca Redonda (RoR), an upwelling site at Bolivar Channel (BoC) subjected to a weak El Niño event at the time of sampling in October 2014, as well as a site without volcanic or upwelling influence at Cowley Islet (CoI). We recorded physico-chemical parameters, and quantified particulate and dissolved organic carbon, transparent exopolymeric particles, and the potential of the water to form larger marine aggregates. Free-living and particle-attached bacterial communities were assessed via 16S rRNA gene sequencing. Both RoR and BoC exhibited temperatures elevated by 1–1.5 °C compared to CoI. RoR further experienced reduced pH between 6.8 and 7.4. We observed pronounced differences in organic carbon pools at each of the three sites, with highest dissolved organic carbon concentrations at BoC and RoR, and highest particulate organic carbon concentrations and aggregate formation at BoC. Bacterioplankton communities at BoC were dominated by opportunistic copiotrophic taxa, such as Alteromonas and Roseobacter, known to thrive in phytoplankton blooms, as opposed to oligotrophic taxa dominating at CoI, such as members of the SAR11 clade. Therefore, we propose that bacterial communities were mainly influenced by the availability of organic carbon at the investigated sites. Our study provides a comprehensive characterization of organic carbon pools and bacterioplankton communities, highlighting the high heterogeneity of various components of the marine carbon cycle around the Galapagos Archipelago.

scholarly journals Microbial community dynamics during alfalfa silage with or without clostridial fermentation

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Rongrong Li ◽  
Di Jiang ◽  
Mingli Zheng ◽  
Pengjiao Tian ◽  
Menghu Zheng ◽  
...  
Keyword(s):  
Microbial Community ◽  
Next Generation Sequencing ◽  
Bacterial Communities ◽  
Community Dynamics ◽  
Ammonia Nitrogen ◽  
Clostridium Tyrobutyricum ◽  
Microbial Community Dynamics ◽  
Vigorous Growth ◽  
Alfalfa Silage ◽  
Generation Sequencing

Abstract This study was conducted to examine the effects of Lactobacillus plantarum (LP) and sucrose (S) on clostridial community dynamics and correlation between clostridia and other bacteria in alfalfa silage during ensiling. Fresh alfalfa was directly ensiled without (CK) or with additives (LP, S, LP + S) for 7, 14, 28 and 56 days. Clostridial and bacterial communities were evaluated by next-generation sequencing. Severe clostridial fermentation occurred in CK, as evidenced by the high contents of butyric acid, ammonia nitrogen, and clostridia counts, whereas all additives, particularly LP + S, decreased silage pH and restrained clostridial fermentation. Clostridium perfringens and Clostridium butyricum might act as the main initiators of clostridial fermentation, with Clostridium tyrobutyricum functioning as the promoters of fermentation until the end of ensiling. Clostridium tyrobutyricum (33.5 to 98.0%) dominated the clostridial community in CK from 14 to 56 days, whereas it was below 17.7% in LP + S. Clostridium was negatively correlated with the genus Lactobacillus, but positively correlated with the genera Enterococcus, Lactococcus and Leuconostoc. Insufficient acidification promoted the vigorous growth of C. tyrobutyricum of silage in later stages, which was mainly responsible for the clostridial fermentation of alfalfa silage.

scholarly journals Dissolved organic carbon transformations and microbial community response to variations in recharge waters in a shallow carbonate aquifer

2016 ◽  
Vol 129 (1-2) ◽  
pp. 215-234 ◽  
Author(s):  
Katherine J. Cooper ◽  
Fiona F. Whitaker ◽  
Alexandre M. Anesio ◽  
Miranda Naish ◽  
Darren M. Reynolds ◽  
...  
Keyword(s):  
Microbial Community ◽  
Organic Carbon ◽  
Dissolved Organic Carbon ◽  
Community Response ◽  
Carbonate Aquifer
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