scholarly journals Completed Genome Sequences of Borrelia burgdorferiSensu Stricto B31(NRZ) and Closely Related Patient Isolates from Europe

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Gabriele Margos ◽  
Sabrina Hepner ◽  
Christoph Mang ◽  
Andreas Sing ◽  
Bernhard Liebl ◽  
...  
Keyword(s):  
United States ◽  
Borrelia Burgdorferi ◽  
Lyme Borreliosis ◽  
Causative Agent ◽  
Erythema Migrans ◽  
The United States ◽  
Sensu Stricto ◽  
Genome Sequences ◽  
Content Type

ABSTRACT Borrelia burgdorferi sensu stricto is a causative agent of human Lyme borreliosis in the United States and Europe. We report here the completed genome sequences of strain B31 isolated from a tick in the United States and two closely related strains from Europe, PAli and PAbe, which were isolated from patients with erythema migrans and neuroborreliosis, respectively.

scholarly journals Complex Population Structure of Borrelia burgdorferi in Southeastern and South Central Canada as Revealed by Phylogeographic Analysis

2014 ◽  
Vol 81 (4) ◽  
pp. 1309-1318 ◽  
Author(s):  
S. Mechai ◽  
G. Margos ◽  
E. J. Feil ◽  
L. R. Lindsay ◽  
N. H. Ogden
Keyword(s):  
United States ◽  
Borrelia Burgdorferi ◽  
Ixodes Scapularis ◽  
The United States ◽  
Sensu Stricto ◽  
Content Type ◽  
South Central ◽  
Central Canada ◽  
Complex Population ◽  
Reservoir Hosts

ABSTRACTLyme disease, caused by the bacteriumBorrelia burgdorferisensu stricto, is an emerging zoonotic disease in Canada and is vectored by the blacklegged tick,Ixodes scapularis. Here we used Bayesian analyses of sequence types (STs), determined by multilocus sequence typing (MLST), to investigate the phylogeography ofB. burgdorferipopulations in southern Canada and the United States by analyzing MLST data from 564B. burgdorferi-positive samples collected during surveillance. A total of 107 Canadian samples from field sites were characterized as part of this study, and these data were combined with existing MLST data for samples from the United States and Canada. Only 17% of STs were common between both countries, while 49% occurred only in the United States, and 34% occurred only in Canada. However, STs in southeastern Ontario and southwestern Quebec were typically identical to those in the northeastern United States, suggesting a recent introduction into this region from the United States. In contrast, STs in other locations in Canada (the Maritimes; Long Point, Ontario; and southeastern Manitoba) were frequently unique to those locations but were putative descendants of STs previously found in the United States. The picture in Canada is consistent with relatively recent introductions from multiple refugial populations in the United States. These data thus point to a geographic pattern of populations ofB. burgdorferiin North America that may be more complex than simply comprising northeastern, midwestern, and Californian groups. We speculate that this reflects the complex ecology and spatial distribution of key reservoir hosts.

scholarly journals Genome Sequences of Two Bacillus Phages Isolated from Indonesia

2019 ◽  
Vol 8 (50) ◽  
Author(s):  
Yoga A. Handoko ◽  
Agustin K. Wardani ◽  
Aji Sutrisno ◽  
Simon B. Widjanarko ◽  
Trever L. Thurgood ◽  
...  
Keyword(s):  
United States ◽  
South Korea ◽  
The United States ◽  
Genome Sequences ◽  
Content Type

Here, the genome sequences of two soil bacteriophages isolated from a red chili plantation in Indonesia are presented. The genome of vB_BspS_SplendidRed (42,859 bp) is highly similar to Bacillus phage Ray17 from the United States, while vB_BspM_MarvelLand (156,945 bp) is highly similar to Bacillus phage BC01 from South Korea.

scholarly journals Complete Genome Sequences of Mycobacteriophages OKaNui and DroogsArmy

2020 ◽  
Vol 9 (33) ◽  
Author(s):  
Kayla M. Fast ◽  
Kadaisha G. Johnson ◽  
Kaitlyn N. Mayfield ◽  
Leah A. Stephens ◽  
T. Hunter Reid ◽  
...  
Keyword(s):  
United States ◽  
Mycobacterium Smegmatis ◽  
Complete Genome ◽  
The United States ◽  
Genome Sequences ◽  
Bacterial Host ◽  
Content Type

ABSTRACT Mycobacteriophages OKaNui and DroogsArmy were isolated from soil using the bacterial host Mycobacterium smegmatis mc2155, which belongs to the phylum Actinobacteria. OKaNui was discovered in east Mississippi and DroogsArmy in west Alabama in the United States. The genomes of OKaNui and DroogsArmy were 51,424 bp and 53,254 bp long, respectively.

scholarly journals Draft Genome Sequences of Eight Vibrio sp. Clinical Isolates from across the United States That Form a Basal Sister Clade to Vibrio cholerae

2019 ◽  
Vol 8 (3) ◽  
Author(s):  
Kevin Liang ◽  
Mohammad Tarequl Islam ◽  
Nora Hussain ◽  
Nathan S. Winkjer ◽  
Monica S. Im ◽  
...  
Keyword(s):  
United States ◽  
Vibrio Cholerae ◽  
Draft Genome ◽  
The United States ◽  
Clinical Isolates ◽  
Genome Sequences ◽  
Content Type ◽  
Monophyletic Cluster ◽  
Sister Clade

We sequenced the genomes of eight isolates from various regions of the United States. These isolates form a monophyletic cluster clearly related to but distinct from Vibrio cholerae.

scholarly journals Finished Whole-Genome Sequences of Two Clostridium botulinum Type A(B) Isolates

2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Jessica L. Halpin ◽  
Karen Hill ◽  
Shannon L. Johnson ◽  
David Carlton Bruce ◽  
T. Brian Shirey ◽  
...  
Keyword(s):  
United States ◽  
Clostridium Botulinum ◽  
Type A ◽  
The United States ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Botulinum Type ◽  
Clinically Significant

ABSTRACT Clostridium botulinum secretes a potent neurotoxin that causes devastating effects when ingested, including paralysis and death if not treated. In the United States, some clinically significant strains produce toxin type A while also harboring a silent B gene. These are the first two closed genome sequences published for this subset.

scholarly journals Study of a Cohort of 1,886 Persons To Determine Changes in Antibody Reactivity to Borrelia burgdorferi 3 Months after a Tick Bite

2015 ◽  
Vol 22 (7) ◽  
pp. 823-827 ◽  
Author(s):  
Ram B. Dessau ◽  
Linda Fryland ◽  
Peter Wilhelmsson ◽  
Christina Ekerfelt ◽  
Dag Nyman ◽  
...  
Keyword(s):  
Borrelia Burgdorferi ◽  
Lyme Borreliosis ◽  
Erythema Migrans ◽  
Significant Rise ◽  
Tick Bite ◽  
Content Type ◽  
Paired Samples ◽  
Antibody Reactivity ◽  
Flagellar Antigen ◽  
Relative Change

ABSTRACTLyme borreliosis is a tick-borne disease caused by the bacteriumBorrelia burgdorferi. The most frequent clinical manifestation is a rash called erythema migrans. Changes in antibody reactivity toB. burgdorferi3 months after a tick bite are measured using enzyme-linked immunosorbent assays (ELISAs). One assay is based on native purified flagellum antigen (IgG), and the other assay is based on a recombinant antigen called C6 (IgG or IgM). Paired samples were taken at the time of a tick bite and 3 months later from 1,886 persons in Sweden and the Åland Islands, Finland. The seroconversion or relative change is defined by dividing the measurement units from the second sample by those from the first sample. The threshold for the minimum level of significant change was defined at the 2.5% level to represent the random error level. The thresholds were a 2.7-fold rise for the flagellar IgG assay and a 1.8-fold rise for the C6 assay. Of 1,886 persons, 102/101 (5.4%) had a significant rise in antibody reactivity in the flagellar assay or the C6 assay. Among 40 cases with a diagnosis of Lyme borreliosis, the sensitivities corresponding to a rise in antibodies were 33% and 50% for the flagellar antigen and the C6 antigen, respectively. Graphical methods to display the antibody response and to choose thresholds for a rise in relative antibody reactivity are shown and discussed. In conclusion, 5.4% of people with tick bites showed a rise inBorrelia-specific antibodies above the 2.5% threshold in either ELISA but only 40 (2.1%) developed clinical Lyme borreliosis.

scholarly journals Antibodies to Borrelia burgdorferi OspA, OspC, OspF, and C6 Antigens as Markers for Early and Late Infection in Dogs

2012 ◽  
Vol 19 (4) ◽  
pp. 527-535 ◽  
Author(s):  
Bettina Wagner ◽  
Heather Freer ◽  
Alicia Rollins ◽  
David Garcia-Tapia ◽  
Hollis N. Erb ◽  
...  
Keyword(s):  
Lyme Disease ◽  
Borrelia Burgdorferi ◽  
The United States ◽  
Sensu Stricto ◽  
Antibody Responses ◽  
Surface Proteins ◽  
Early Infection ◽  
Enzyme Linked Immunosorbent Assay ◽  
Content Type ◽  
Antibody Levels

ABSTRACTLyme disease in the United States is caused byBorrelia burgdorferisensu stricto, which is transmitted to mammals by infected ticks.Borreliaspirochetes differentially express immunogenic outer surface proteins (Osp). Our aim was to evaluate antibody responses to Osp antigens to aid the diagnosis of early infection and the management of Lyme disease. We analyzed antibody responses during the first 3 months after the experimental infection of dogs using a novel multiplex assay. Results were compared to those obtained with two commercial assays detecting C6 antigen. Multiplex analysis identified antibodies to OspC and C6 as early as 3 weeks postinfection (p.i.) and those to OspF by 5 weeks p.i. Antibodies to C6 and OspF increased throughout the study, while antibodies to OspC peaked between 7 and 11 weeks p.i. and declined thereafter. A short-term antibody response to OspA was observed in 3/8 experimentally infected dogs on day 21 p.i. Quant C6 enzyme-linked immunosorbent assay (ELISA) results matched multiplex results during the first 7 weeks p.i.; however, antibody levels subsequently declined by up to 29%. Immune responses then were analyzed in sera from 125 client-owned dogs and revealed high agreement between antibodies to OspF and C6 as robust markers for infection. Results from canine patient sera supported that OspC is an early infection marker and antibodies to OspC decline over time. The onset and decline of antibody responses toB. burgdorferiOsp antigens and C6 reflect their differential expression during infection. They provide valuable tools to determine the stage of infection, treatment outcomes, and vaccination status in dogs.

scholarly journals Draft Genome Sequences of 14 Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Isolates from Swine Farms in the United States

2017 ◽  
Vol 5 (44) ◽  
Author(s):  
Samantha J. Hau ◽  
Darrell O. Bayles ◽  
David P. Alt ◽  
Timothy S. Frana ◽  
Tracy L. Nicholson
Keyword(s):  
United States ◽  
Staphylococcus Aureus ◽  
Methicillin Resistant Staphylococcus Aureus ◽  
Draft Genome ◽  
The United States ◽  
Sequence Type ◽  
Genome Sequences ◽  
Methicillin Resistant ◽  
Content Type ◽  
Mrsa St398

ABSTRACT Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) is a bacterium carried by or obtained from swine and other livestock. The initial and predominant swine-associated LA-MRSA sequence type (ST) identified is ST398. Here, we present 14 draft genome sequences from LA-MRSA ST398 isolates found in the United States.

scholarly journals Genome Sequences of Mycobacterium Strains Recovered from Captive Elephants with Tuberculosis

2021 ◽  
Vol 10 (36) ◽  
Author(s):  
Evan P. Brenner ◽  
Syeda A. Hadi ◽  
Beth Harris ◽  
Suelee Robbe-Austerman ◽  
Srinand Sreevatsan
Keyword(s):  
United States ◽  
Mycobacterium Tuberculosis ◽  
Endangered Species ◽  
Human Health ◽  
The United States ◽  
Whole Genome ◽  
Genome Sequences ◽  
Asian Elephants ◽  
Content Type

Members of the Mycobacterium tuberculosis complex cause tuberculosis, infamous for enormous impacts on human health. As zoonoses, they also threaten endangered species like African/Asian elephants. We report the whole-genome sequences of Mycobacterium tuberculosis biovars tuberculosis and bovis from two zoo elephants in the United States.

scholarly journals Complete Genome Sequences of Two Avilamycin-Resistant Enterococcus faecium Strains Isolated from Chicken in the United States

2019 ◽  
Vol 8 (47) ◽  
Author(s):  
S. Zhao ◽  
C. Li ◽  
S. Mukherjee ◽  
C. H. Hsu ◽  
R. Singh ◽  
...  
Keyword(s):  
United States ◽  
Enterococcus Faecium ◽  
Complete Genome ◽  
The United States ◽  
Multidrug Resistant ◽  
Genome Sequences ◽  
Content Type ◽  
Young Chicken

Avilamycin-resistant Enterococcus spp. have never been reported in the United States. Here, we report the complete genome sequences of two avilamycin-resistant (Avir) Enterococcus faecium strains isolated from a retail chicken and a cecal sample from a young chicken. Both isolates are multidrug resistant (MDR) and carry emtA on MDR plasmids.

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