An empirical evaluation of several univariate methods that adjust for size variation in morphometric data

1985 ◽  
Vol 63 (6) ◽  
pp. 1429-1439 ◽  
Author(s):  
James D. Reist

A variety of univariate transformations that attempt to separate size and shape variation are available: logarithms, ratios, logarithms of ratios, allometric adjustment, and regression techniques (major axis, residuals). Using the same basic data set derived from morphometric measurements of a freshwater fish, these transformations were examined for their effects upon variable distributions, correlations, and covariances. Those that were at least partly effective in removing size variation affected the correlation and covariance structure of the data in different ways, and thus resulted in different biological interpretations for principal component and discriminant analyses. Adjustment of size using a regression technique (computation of residuals from a standard size axis) or allometric adjustment to a standard size was preferred because these allowed for the complete removal of size variation and adverse effects were minimal. Although the actual estimates of shape were different for these two transformations, the relationships that resulted between groups inherent in the data were very similar. If heterogeneity between samples exists in the regression slopes or the allometric coefficients, the common within-groups slope or coefficient must be used to adjust for size.

2021 ◽  
Vol 11 (7) ◽  
pp. 592
Author(s):  
Sonja A. G. A. Grothues ◽  
Klaus Radermacher

The native femoral J-Curve is known to be a relevant determinant of knee biomechanics. Similarly, after total knee arthroplasty, the J-Curve of the femoral implant component is reported to have a high impact on knee kinematics. The shape of the native femoral J-Curve has previously been analyzed in 2D, however, the knee motion is not planar. In this study, we investigated the J-Curve in 3D by principal component analysis (PCA) and the resulting mean shapes and modes by geometric parameter analysis. Surface models of 90 cadaveric femora were available, 56 male, 32 female and two without respective information. After the translation to a bone-specific coordinate system, relevant contours of the femoral condyles were derived using virtual rotating cutting planes. For each derived contour, an extremum search was performed. The extremum points were used to define the 3D J-Curve of each condyle. Afterwards a PCA and a geometric parameter analysis were performed on the medial and lateral 3D J-Curves. The normalized measures of the mean shapes and the aspects of shape variation of the male and female 3D J-Curves were found to be similar. When considering both female and male J-Curves in a combined analysis, the first mode of the PCA primarily consisted of changes in size, highlighting size differences between female and male femora. Apart from changes in size, variation regarding aspect ratio, arc lengths, orientation, circularity, as well as regarding relative location of the 3D J-Curves was found. The results of this study are in agreement with those of previous 2D analyses on shape and shape variation of the femoral J-Curves. The presented 3D analysis highlights new aspects of shape variability, e.g., regarding curvature and relative location in the transversal plane. Finally, the analysis presented may support the design of (patient-specific) femoral implant components for TKA.


2020 ◽  
Vol 13 (2) ◽  
pp. 11
Author(s):  
Bekti Endar Susilowati ◽  
Pardomuan Robinson Sihombing

Principal Component Analysis (PCA) merupakan salah satu analisis multivariat yang digunakan untuk mengganti variable dengan Principal Component yang sedikit jumlahnya namun tidak terlalu banyak informasi yang hilang. Atau dengan kata lain, it used to explain the underlying variance-covariance structure of the large data set of variables through a few linear combination of these variables. PCA sangat dipengaruhi oleh kehadiran outlier karena didasarkan pada matriks kovarian yang sensitive terhadap outlier. Oleh karena itu, pada analisis ini akan digunakan PCA yang robust terhadap outlier yaitu ROBPCA atau PCA Hubert. Selanjutnya, dari Principal Component yang terbentuk digunakan sebagai input (masukan) untuk cluster analysis dengan metode Clara (Clustering Large Area). Clustering Large Area merupakan salah satu metode k-medoids yang robust terhadap outlier dan baik digunakan pada data dalam jumlah besar. Dalam studi kasus terhadap variabel penyusun indeks kebahagiaan berdasarkan The World Happiness Report 2018 dengan metode Clara yang menggunakan jarak manhattan didapatkan nilai rata-rata Overall Average Silhouette Width yang terbaik pada 5 cluster. 


2015 ◽  
Vol 14 (4) ◽  
pp. 165-181 ◽  
Author(s):  
Sarah Dudenhöffer ◽  
Christian Dormann

Abstract. The purpose of this study was to replicate the dimensions of the customer-related social stressors (CSS) concept across service jobs, to investigate their consequences for service providers’ well-being, and to examine emotional dissonance as mediator. Data of 20 studies comprising of different service jobs (N = 4,199) were integrated into a single data set and meta-analyzed. Confirmatory factor analyses and explorative principal component analysis confirmed four CSS scales: disproportionate expectations, verbal aggression, ambiguous expectations, disliked customers. These CSS scales were associated with burnout and job satisfaction. Most of the effects were partially mediated by emotional dissonance. Further analyses revealed that differences among jobs exist with regard to the factor solution. However, associations between CSS and outcomes are mainly invariant across service jobs.


2018 ◽  
Author(s):  
Peter De Wolf ◽  
Zhuangqun Huang ◽  
Bede Pittenger

Abstract Methods are available to measure conductivity, charge, surface potential, carrier density, piezo-electric and other electrical properties with nanometer scale resolution. One of these methods, scanning microwave impedance microscopy (sMIM), has gained interest due to its capability to measure the full impedance (capacitance and resistive part) with high sensitivity and high spatial resolution. This paper introduces a novel data-cube approach that combines sMIM imaging and sMIM point spectroscopy, producing an integrated and complete 3D data set. This approach replaces the subjective approach of guessing locations of interest (for single point spectroscopy) with a big data approach resulting in higher dimensional data that can be sliced along any axis or plane and is conducive to principal component analysis or other machine learning approaches to data reduction. The data-cube approach is also applicable to other AFM-based electrical characterization modes.


2020 ◽  
Vol 16 (8) ◽  
pp. 1088-1105
Author(s):  
Nafiseh Vahedi ◽  
Majid Mohammadhosseini ◽  
Mehdi Nekoei

Background: The poly(ADP-ribose) polymerases (PARP) is a nuclear enzyme superfamily present in eukaryotes. Methods: In the present report, some efficient linear and non-linear methods including multiple linear regression (MLR), support vector machine (SVM) and artificial neural networks (ANN) were successfully used to develop and establish quantitative structure-activity relationship (QSAR) models capable of predicting pEC50 values of tetrahydropyridopyridazinone derivatives as effective PARP inhibitors. Principal component analysis (PCA) was used to a rational division of the whole data set and selection of the training and test sets. A genetic algorithm (GA) variable selection method was employed to select the optimal subset of descriptors that have the most significant contributions to the overall inhibitory activity from the large pool of calculated descriptors. Results: The accuracy and predictability of the proposed models were further confirmed using crossvalidation, validation through an external test set and Y-randomization (chance correlations) approaches. Moreover, an exhaustive statistical comparison was performed on the outputs of the proposed models. The results revealed that non-linear modeling approaches, including SVM and ANN could provide much more prediction capabilities. Conclusion: Among the constructed models and in terms of root mean square error of predictions (RMSEP), cross-validation coefficients (Q2 LOO and Q2 LGO), as well as R2 and F-statistical value for the training set, the predictive power of the GA-SVM approach was better. However, compared with MLR and SVM, the statistical parameters for the test set were more proper using the GA-ANN model.


2017 ◽  
Vol 727 ◽  
pp. 447-449 ◽  
Author(s):  
Jun Dai ◽  
Hua Yan ◽  
Jian Jian Yang ◽  
Jun Jun Guo

To evaluate the aging behavior of high density polyethylene (HDPE) under an artificial accelerated environment, principal component analysis (PCA) was used to establish a non-dimensional expression Z from a data set of multiple degradation parameters of HDPE. In this study, HDPE samples were exposed to the accelerated thermal oxidative environment for different time intervals up to 64 days. The results showed that the combined evaluating parameter Z was characterized by three-stage changes. The combined evaluating parameter Z increased quickly in the first 16 days of exposure and then leveled off. After 40 days, it began to increase again. Among the 10 degradation parameters, branching degree, carbonyl index and hydroxyl index are strongly associated. The tensile modulus is highly correlated with the impact strength. The tensile strength, tensile modulus and impact strength are negatively correlated with the crystallinity.


2021 ◽  
Vol 18 (1) ◽  
pp. 172988142098573
Author(s):  
Wenjie Geng ◽  
Zhiqiang Cao ◽  
Zhonghui Li ◽  
Yingying Yu ◽  
Fengshui Jing ◽  
...  

Vision-based grasping plays an important role in the robot providing better services. It is still challenging under disturbed scenes, where the target object cannot be directly grasped constrained by the interferences from other objects. In this article, a robotic grasping approach with firstly moving the interference objects is proposed based on elliptical cone-based potential fields. Single-shot multibox detector (SSD) is adopted to detect objects, and considering the scene complexity, Euclidean cluster is also employed to obtain the objects without being trained by SSD. And then, we acquire the vertical projection of the point cloud for each object. Considering that different objects have different shapes with respective orientation, the vertical projection is executed along its major axis acquired by the principal component analysis. On this basis, the minimum projected envelope rectangle of each object is obtained. To construct continuous potential field functions, an elliptical-based functional representation is introduced due to the better matching degree of the ellipse with the envelope rectangle among continuous closed convex curves. Guided by the design principles, including continuity, same-eccentricity equivalence, and monotonicity, the potential fields based on elliptical cone are designed. The current interference object to be grasped generates an attractive field, whereas other objects correspond to repulsive ones, and their resultant field is used to solve the best placement of the current interference object. The effectiveness of the proposed approach is verified by experiments.


Author(s):  
Daniel Rojas-Valverde ◽  
José Pino-Ortega ◽  
Rafael Timón ◽  
Randall Gutiérrez-Vargas ◽  
Braulio Sánchez-Ureña ◽  
...  

The extensive use of wearable sensors in sport medicine, exercise medicine, and health has increased the interest in their study. That is why it is necessary to test these technologies’ efficiency, effectiveness, agreement, and reliability in different settings. Consequently, the purpose of this article was to analyze the magnetic, angular rate, and gravity (MARG) sensor’s test-retest agreement and reliability when assessing multiple body segments’ external loads during off-road running. A total of 18 off-road runners (38.78 ± 10.38 years, 73.24 ± 12.6 kg, 172.17 ± 9.48 cm) ran two laps (1st and 2nd Lap) of a 12 km circuit wearing six MARG sensors. The sensors were attached to six different body segments: left (MPLeft) and right (MPRight) malleolus peroneus, left (VLLeft) and right (VLRight) vastus lateralis, lumbar (L1-L3), and thorax (T2-T4) using a special neoprene suit. After a principal component analysis (PCA) was performed, the total data set variance of all body segments was represented by 44.08%–70.64% for the 1st PCA factor considering two variables, Player LoadRT and Impacts, on L1-L3, respectively. These two variables were chosen among three total accelerometry-based external load indicators (ABELIs) to perform the agreement and reliability tests due to their relevance based on PCAs for each body segment. There were no significant differences between laps in the Player LoadRT or Impacts ( p > 0.05, trivial). The intraclass correlation and lineal correlation showed a substantial to almost perfect over-time test consistency assessed via reliability in both Player LoadRT and Impacts. Bias and t-test assessments showed good agreement between Laps. It can be concluded that MARGs sensors offer significant test re-test reliability and good agreement when assessing off-road kinematics in the six different body segments.


2021 ◽  
Vol 25 ◽  
pp. 233121652110093
Author(s):  
Patrycja Książek ◽  
Adriana A. Zekveld ◽  
Dorothea Wendt ◽  
Lorenz Fiedler ◽  
Thomas Lunner ◽  
...  

In hearing research, pupillometry is an established method of studying listening effort. The focus of this study was to evaluate several pupil measures extracted from the Task-Evoked Pupil Responses (TEPRs) in speech-in-noise test. A range of analysis approaches was applied to extract these pupil measures, namely (a) pupil peak dilation (PPD); (b) mean pupil dilation (MPD); (c) index of pupillary activity; (d) growth curve analysis (GCA); and (e) principal component analysis (PCA). The effect of signal-to-noise ratio (SNR; Data Set A: –20 dB, –10 dB, +5 dB SNR) and luminance (Data Set B: 0.1 cd/m2, 360 cd/m2) on the TEPRs were investigated. Data Sets A and B were recorded during a speech-in-noise test and included TEPRs from 33 and 27 normal-hearing native Dutch speakers, respectively. The main results were as follows: (a) A significant effect of SNR was revealed for all pupil measures extracted in the time domain (PPD, MPD, GCA, PCA); (b) Two time series analysis approaches (GCA, PCA) provided modeled temporal profiles of TEPRs (GCA); and time windows spanning subtasks performed in a speech-in-noise test (PCA); and (c) All pupil measures revealed a significant effect of luminance. In conclusion, multiple pupil measures showed similar effects of SNR, suggesting that effort may be reflected in multiple aspects of TEPR. Moreover, a direct analysis of the pupil time course seems to provide a more holistic view of TEPRs, yet further research is needed to understand and interpret its measures. Further research is also required to find pupil measures less sensitive to changes in luminance.


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