scholarly journals An HTML5-Based Pure Website Solution for Rapidly Viewing and Processing Large-Scale 3D Medical Volume Reconstruction on Mobile Internet

2017 ◽  
Vol 2017 ◽  
pp. 1-13 ◽  
Author(s):  
Liang Qiao ◽  
Xin Chen ◽  
Ye Zhang ◽  
Jingna Zhang ◽  
Yi Wu ◽  
...  
Keyword(s):  
Volume Rendering ◽  
Large Scale ◽  
Mobile Internet ◽  
Surface Rendering ◽  
Web Based ◽  
Server Side ◽  
High Quality Image ◽  
Special Software ◽  
User Friendly ◽  
Client Side

This study aimed to propose a pure web-based solution to serve users to access large-scale 3D medical volume anywhere with good user experience and complete details. A novel solution of the Master-Slave interaction mode was proposed, which absorbed advantages of remote volume rendering and surface rendering. On server side, we designed a message-responding mechanism to listen to interactive requests from clients (Slave model) and to guide Master volume rendering. On client side, we used HTML5 to normalize user-interactive behaviors on Slave model and enhance the accuracy of behavior request and user-friendly experience. The results showed that more than four independent tasks (each with a data size of 249.4 MB) could be simultaneously carried out with a 100-KBps client bandwidth (extreme test); the first loading time was <12 s, and the response time of each behavior request for final high quality image remained at approximately 1 s, while the peak value of bandwidth was <50-KBps. Meanwhile, the FPS value for each client was ≥40. This solution could serve the users by rapidly accessing the application via one URL hyperlink without special software and hardware requirement in a diversified network environment and could be easily integrated into other telemedical systems seamlessly.

scholarly journals CrosstalkNet: mining large-scale bipartite co-expression networks to characterize epi-stroma crosstalk

2017 ◽  
Author(s):  
Venkata Manem ◽  
George Adam ◽  
Tina Gruosso ◽  
Mathieu Gigoux ◽  
Nicholas Bertos ◽  
...  
Keyword(s):  
Stromal Cells ◽  
Large Scale ◽  
Network Visualization ◽  
Visualization Tool ◽  
Biological Processes ◽  
Web Based ◽  
Link Type ◽  
A Cell ◽  
Large Scale Networks ◽  
User Friendly

ABSTRACTBackground:Over the last several years, we have witnessed the metamorphosis of network biology from being a mere representation of molecular interactions to models enabling inference of complex biological processes. Networks provide promising tools to elucidate intercellular interactions that contribute to the functioning of key biological pathways in a cell. However, the exploration of these large-scale networks remains a challenge due to their high-dimensionality.Results:CrosstalkNet is a user friendly, web-based network visualization tool to retrieve and mine interactions in large-scale bipartite co-expression networks. In this study, we discuss the use of gene co-expression networks to explore the rewiring of interactions between tumor epithelial and stromal cells. We show how CrosstalkNet can be used to efficiently visualize, mine, and interpret large co-expression networks representing the crosstalk occurring between the tumour and its microenvironment.Conclusion:CrosstalkNet serves as a tool to assist biologists and clinicians in exploring complex, large interaction graphs to obtain insights into the biological processes that govern the tumor epithelial-stromal crosstalk. A comprehensive tutorial along with case studies are provided with the application.Availability:The web-based application is available at the following location: http://epistroma.pmgenomics.ca/app/. The code is open-source and freely available from http://github.com/bhklab/EpiStroma-webapp.Contact:[email protected]

lncRNATargets: A platform for lncRNA target prediction based on nucleic acid thermodynamics

2016 ◽  
Vol 14 (04) ◽  
pp. 1650016 ◽  
Author(s):  
Ruifeng Hu ◽  
Xiaobo Sun
Keyword(s):  
Free Energy ◽  
Nucleic Acid ◽  
Large Scale ◽  
Nearest Neighbor ◽  
Binding Free Energy ◽  
Target Prediction ◽  
Easy Access ◽  
Web Based ◽  
Size Limitation ◽  
User Friendly

Many studies have supported that long noncoding RNAs (lncRNAs) perform various functions in various critical biological processes. Advanced experimental and computational technologies allow access to more information on lncRNAs. Determining the functions and action mechanisms of these RNAs on a large scale is urgently needed. We provided lncRNATargets, which is a web-based platform for lncRNA target prediction based on nucleic acid thermodynamics. The nearest-neighbor (NN) model was used to calculate binging-free energy. The main principle of NN model for nucleic acid assumes that identity and orientation of neighbor base pairs determine stability of a given base pair. lncRNATargets features the following options: setting of a specific temperature that allow use not only for human but also for other animals or plants; processing all lncRNAs in high throughput without RNA size limitation that is superior to any other existing tool; and web-based, user-friendly interface, and colored result displays that allow easy access for nonskilled computer operators and provide better understanding of results. This technique could provide accurate calculation on the binding-free energy of lncRNA-target dimers to predict if these structures are well targeted together. lncRNATargets provides high accuracy calculations, and this user-friendly program is available for free at http://www.herbbol.org:8001/lrt/ .

A Web-Based Embedded Sequential Controller with USB 1-N Wireless I/O Modules

2006 ◽  
Vol 505-507 ◽  
pp. 535-540
Author(s):  
Yung Hoh Sheu ◽  
Wu Jeng Li ◽  
Yen Chao Chen ◽  
Jheng Yi Yang
Keyword(s):  
Data Acquisition ◽  
Control Program ◽  
Control Software ◽  
Core System ◽  
Web Based ◽  
Linux Operation System ◽  
Server Side ◽  
Sequential Control ◽  
Multiple Data ◽  
Client Side

This paper designs web-based USB 1-N wireless I/O modules embedded sequential controller. The controller consists of ARM-based core system, a set of USB 1-N wireless I/O data acquisition modules, and sequential control software. The ARM-based core system running Linux operation system forms the basic hardware/software foundation of the controller. The set of USB devices used as I/O interface (sensor and actuator) of thecontroller. With the use of RF chip, the USB I/O is cascaded by wireless 1-N channel such that multiple data acquisition modules can communicate with the controller by a USB port. The device driver of the USB set for the ARM-base Linux system is developed. The sequential control software is designed as client/server structure. The server-side program and client-side program communicate through the Internet. The server-side control program, mainly a PLC interpreter, is an application developed in C++ in the Linux system. The client-side control program is developed in Java and put under a web server of the controller such that the program can be easily deployed by network and run in remote computer. The client program is also used as GUI of the controller.

scholarly journals Prosedur efektif pengembangan aplikasi basis data

2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Zulkarnaen Hatala
Keyword(s):  
Web Application ◽  
Specific Requirement ◽  
Application System ◽  
Web Based ◽  
Database Application ◽  
Server Side ◽  
The Right ◽  
Client Side ◽  
The Web

Abstract—Efficient and quick procedure to build a web application is presented. The steps are intended to build a database application system with hundreds of tables. The procedure can minimize tasks needed to write code and doing manual programming line by line. The intention also to build rapidly web-based database application. In this method security concerning authentification and authorization already built in ensuring the right and eligible access of the user to the system. The end result is ready to use the web-based 3-tier application. Moreover, the application is still flexible to be customized and to be enhanced to suit more specific requirement in part of each module of the software both the server-side and client-side programming codes. Abstrak—Pada penelitian kali ini diusulkan prosedur cepat dan efisien pengembangan aplikasi basis data menggunakan generator aplikasi. Bertujuan untuk meminimalisir penulisan bahasa pemograman. Keuntungan dari prosedur ini adalah bisa digunakan untuk mengembangkan aplikasi basis data secara cepat terutama dengan sistem basis data yang terdiri dari banyak tabel. Hak akses dan prosedur keamanan standar telah disediakan sehingga setiap user terjamin haknya terhadap entitas tertentu di basis data. Hasil generasi adalah aplikasi basis data berbasis web yang siap pakai. Sistem aplikasi yang terbentuk masih sangat lentur untuk untuk dilakukan penyesuaian setiap komponen aplikasi baik di sisi server maupun di sisi client.

scholarly journals The Framework for Web-Based Automated Online Question Paper Generator through JEE

2018 ◽  
Vol 7 (3) ◽  
pp. 1415
Author(s):  
Vinayak Hegde ◽  
Lavanya V Rao ◽  
Shivali B S
Keyword(s):  
Web Application ◽  
Large Scale ◽  
Educational Institution ◽  
Faculty Members ◽  
Educational Institutions ◽  
Small Scale ◽  
Web Based ◽  
Educational Institute ◽  
User Friendly ◽  
Word Format

Examinations are an indispensable part of a student’s life. In the conventional mechanism, the question paper generation is time-consuming work for the faculty members of the educational institution. Every educational institute mandatorily expects exam setters to follow its own typesetting format. We have designed the automated question paper setting software to be user-friendly so that, paper setters can overcome from the typographic problem. Presently in most of the educational institutions question papers are set manually. It is time-consuming work and there may be chances of repetition of the same questions. So, in order to make the question paper generation more convenient to use, the web application is developed using Java Enterprise Edition (JEE) that can be accessed from LAN/Intranet.The application comes with the Admin Module and Teachers Module. The Admin grants access to the users by registering them. The faculty can access the system once they are registered. The faculty can enter questions in the database daily as per their free time. In this way, the question pool can be generated. The questions are approved by the chairperson and substandard questions are discarded. The question paper is then generated by selected course experts. The Fisher-Yates Shuffling algorithm used to choose questions randomly from the pool of questions from the database. Text Mining Algorithm aids in duplicity removal from the paper.  The generated question paper will be in Word Format. In our application, we assure better security, removal of duplicity, cost-effectiveness, and human intervention avoidance. It can be used by small-scale and large-scale institutions.  

Abstract 2597: Centralized and Study-specific Phenotyping in a Large-scale Stroke Genetics Study: An Analysis from the NINDS Stroke Genetics Network (SiGN)

Stroke ◽  
2012 ◽  
Vol 43 (suppl_1) ◽  
Author(s):  
Bradford B Worrall ◽  
Alejandro Rabinstein ◽  
Dale M Gamble ◽  
Kevin M Barrett ◽  
Shaneela Malik ◽  
...  
Keyword(s):  
Ischemic Stroke ◽  
Large Scale ◽  
Association Studies ◽  
Web Based ◽  
Stroke Treatment ◽  
Automated Algorithm ◽  
Genome Association ◽  
Whole Genome Association ◽  
Toast Classification ◽  
User Friendly

Background: The Stroke Genetics Network (SiGN) funded by the NINDS aims to identify genetic risk factors in ischemic stroke using whole-genome association studies (GWAS). High quality phenotyping is crucial to successful application of GWAS. As a heterogenous disorder, stroke poses specific challenges. The Trial of Org 10172 in Acute Stroke Treatment (TOAST) classification is a broadly used, but its validity is challenged especially when performed by multiple investigators with differing interpretations of the system. The Causative Classification System for Ischemic Stroke (CCS) system is a new, web-based, and computerized algorithm that integrates clinical, diagnostic, and etiologic stroke characteristics in an evidence-based manner ( ccs.mgh.harvard.edu ) to generate subtypes. Methods: In planning the SiGN proposal, a sample of 20 coded charts were collected from a subset of participating studies to assess feasibility of central adjudication and comparability to study-specific TOAST. Two central adjudicators reviewed all records and generated TOAST and CCS subtypes. These were compared to study-specific TOAST subtype and the CCS phenotype generated for SiGN by local trained adjudicators. CCS data is now available for 7134 included cases using both a 5 and a 7 category system as defined in the table . Results: All 4 phenotypes were available for 115 ischemic stroke cases from 6 studies in SiGN. Basic demographics were 54% women, 63% white, and median age between 65-74. Table 1 provides the agreement between the various subtypes. Table 2 describes the types of disagreement. Conclusions: Central adjudication with only two adjudicators and curated medical records yielded more consistent subtyping independent of phenotyping system. The agreement for TOAST was higher than published rates by independent groups (∼0.50). In contrast, the agreement for CCS was lower than previously published (0.85-0.95). Site adjudicators' familiarity with TOAST and inexperience with CCS may contribute. Although CCS is an automated algorithm and has a number of user friendly features, our findings suggest that formal training and certification process before starting to use CCS may be worthwhile to achieve optimal benefit from the system.

Review dan Analisa Faktor-Faktor Yang Mempengaruhi Kecepatan Akses Halaman Website

2019 ◽  
Vol 11 (1) ◽  
pp. 38-45
Author(s):  
Himawan Wijaya
Keyword(s):  
Mobile Internet ◽  
Access Time ◽  
Web Pages ◽  
Web Page ◽  
Server Side ◽  
Internet Users ◽  
Ajax Technology ◽  
Technical Factors ◽  
Network Speed ◽  
Client Side

The change in the behavior of internet users from using computers or laptops to mobile internet users makes changes in the way the browser and also the web pages display information. Internet users generally want a quick access time when visiting a website page to get the desired information. In the research conducted in the writing of this journal, the researchers wanted to show and explain the several important factors that influence the speed of access from a website page, as well as analyzing based on technical factors. Where the main discussion in this study will focus more on the evaluation of technical factors starting from the programming side (server side programming and client side programming) and also the design of the user interface using web pages using minify CSS along with the use of AJAX technology. The results to be achieved from this study are to identify how much influence the technical factors mentioned above have on the speed of visitor access to a web page, apart from other technical factors such as internet network speed, devices and areas where users can access website page.

scholarly journals Web-based Spatial Decision Support: Status and Research Directions

2021 ◽  
Author(s):  
Claus Rinner
Keyword(s):  
Decision Support ◽  
Public Participation ◽  
User Studies ◽  
Spatial Decision Support ◽  
Spatial Decision Support Systems ◽  
Research Directions ◽  
Web Based ◽  
Client Server ◽  
Server Side ◽  
Client Side

This paper summarizes research on Web-based spatial decision support systems (WebSDSS). The review distinguishes early server-side from more recent client-side applications. A third category of WebSDSS focusing on spatial decision support in public participation is typically implemented as a mixed client/server-based system. Conclusions drawn from previous work include the need for systematic user studies of WebSDSS, and the adoption of interoperable architectures for distributed spatial decision support. Furthermore, a conceptual framework is proposed to facilitate further studies of WebSDSS methods.

scholarly journals A WEB-BASED INTERACTIVE PLATFORM FOR CO-CLUSTERING SPATIO-TEMPORAL DATA

2017 ◽  
Vol XLII-2/W7 ◽  
pp. 175-179
Author(s):  
X. Wu ◽  
A. Poorthuis ◽  
R. Zurita-Milla ◽  
M.-J. Kraak
Keyword(s):  
Clustering Algorithm ◽  
Temporal Patterns ◽  
Temporal Data ◽  
Web Based ◽  
Server Side ◽  
Exploratory Data ◽  
Spatio Temporal ◽  
Client Side ◽  
Concurrent Analysis ◽  
Selection Of

Since current studies on clustering analysis mainly focus on exploring spatial or temporal patterns separately, a co-clustering algorithm is utilized in this study to enable the concurrent analysis of spatio-temporal patterns. To allow users to adopt and adapt the algorithm for their own analysis, it is integrated within the server side of an interactive web-based platform. The client side of the platform, running within any modern browser, is a graphical user interface (GUI) with multiple linked visualizations that facilitates the understanding, exploration and interpretation of the raw dataset and co-clustering results. Users can also upload their own datasets and adjust clustering parameters within the platform. To illustrate the use of this platform, an annual temperature dataset from 28 weather stations over 20 years in the Netherlands is used. After the dataset is loaded, it is visualized in a set of linked visualizations: a geographical map, a timeline and a heatmap. This aids the user in understanding the nature of their dataset and the appropriate selection of co-clustering parameters. Once the dataset is processed by the co-clustering algorithm, the results are visualized in the small multiples, a heatmap and a timeline to provide various views for better understanding and also further interpretation. Since the visualization and analysis are integrated in a seamless platform, the user can explore different sets of co-clustering parameters and instantly view the results in order to do iterative, exploratory data analysis. As such, this interactive web-based platform allows users to analyze spatio-temporal data using the co-clustering method and also helps the understanding of the results using multiple linked visualizations.

The Adaptation of a Residential Course to Web-Based Environment for Increasing Productivity

2018 ◽  
pp. 586-606 ◽  
Author(s):  
Hakan Tüzün ◽  
Hatice Çıralı Sarıca ◽  
Nihal Menzi Çetin ◽  
Mehmet Kokoç ◽  
Gülşen Sert ◽  
...  
Keyword(s):  
Management System ◽  
Large Scale ◽  
Research University ◽  
Learning Management System ◽  
Web Based ◽  
Design Based Research ◽  
System A ◽  
Learning Management ◽  
User Friendly ◽  
Basic English

This study examines the design process of a blended learning environment using a learning management system to transform Basic English courses into the web-based distance learning format in the School of Foreign Languages at a large scale research university in Turkey. The research design was based on design-based research and the ASSURE, which is an instructional design model. A design plan was created based on the needs indicated by the analysis, and the necessary materials were developed and transferred to the learning management system. A usability test of the environment was conducted for increasing efficiency of environment, facilitating learning, increasing productivity and making the environment more user-friendly. As a result, an environment was designed where instructors can create the desired multimedia materials (videos, exercises, quizzes). Students can access these materials, discuss with each other and instructor (chat, discussion) and assess their learning outcomes (weekly homework, quizzes, games).

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