scholarly journals miRNAomic Approach to Plant Nitrogen Starvation

2021 ◽  
Vol 2021 ◽  
pp. 1-14
Author(s):  
Peerzada Yasir Yousuf ◽  
Peerzada Arshid Shabir ◽  
Khalid Rehman Hakeem
Keyword(s):  
Nitrogen Starvation ◽  
Regulation Of Gene Expression ◽  
Regulatory Mechanisms ◽  
Nitrogen Use ◽  
Plant Nitrogen ◽  
Environmental Consequences ◽  
Current Review ◽  
N Utilization ◽  
N Metabolism ◽  
Growth Development

Nitrogen (N) is one of the indispensable nutrients required by plants for their growth, development, and survival. Being a limited nutrient, it is mostly supplied exogenously to the plants, to maintain quality and productivity. The increased use of N fertilizers is associated with high-cost inputs and negative environmental consequences, which necessitates the development of nitrogen-use-efficient plants for sustainable agriculture. Understanding the regulatory mechanisms underlying N metabolism in plants under low N is one of the prerequisites for the development of nitrogen-use-efficient plants. One of the important and recently discovered groups of regulatory molecules acting at the posttranscriptional and translational levels are microRNAs (miRNAs). miRNAs are known to play critical roles in the regulation of gene expression in plants under different stress conditions including N stress. Several classes of miRNAs associated with N metabolism have been identified so far. These nitrogen-responsive miRNAs may provide a platform for a better understanding of the regulation of N metabolism and pave a way for the development of genotypes for better N utilization. The current review presents a brief outline of miRNAs and their regulatory role in N metabolism.

scholarly journals A 1232 bp upstream sequence of glutamine synthetase 1b from Eichhornia crassipes is a root-preferential promoter sequence

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Yanshan Zhong ◽  
Xiaodan Lu ◽  
Zhiwei Deng ◽  
Ziqing Lu ◽  
Minghui Fu
Keyword(s):  
Glutamine Synthetase ◽  
Eichhornia Crassipes ◽  
Invasive Plant ◽  
Promoter Sequence ◽  
Regulatory Mechanisms ◽  
Pcr Analysis ◽  
Regulation Mechanism ◽  
Upstream Sequence ◽  
Specific Expression ◽  
N Metabolism

Abstract Background Glutamine synthetase (GS) acts as a key enzyme in plant nitrogen (N) metabolism. It is important to understand the regulation of GS expression in plant. Promoters can initiate the transcription of its downstream gene. Eichhornia crassipes is a most prominent aquatic invasive plant, which has negative effects on environment and economic development. It also can be used in the bioremediation of pollutants present in water and the production of feeding and energy fuel. So identification and characterization of GS promoter in E. crassipes can help to elucidate its regulation mechanism of GS expression and further to control its N metabolism. Results A 1232 bp genomic fragment upstream of EcGS1b sequence from E. crassipes (EcGS1b-P) has been cloned, analyzed and functionally characterized. TSSP-TCM software and PlantCARE analysis showed a TATA-box core element, a CAAT-box, root specific expression element, light regulation elements including chs-CMA1a, Box I, and Sp1 and other cis-acting elements in the sequence. Three 5′-deletion fragments of EcGS1b upstream sequence with 400 bp, 600 bp and 900 bp length and the 1232 bp fragment were used to drive the expression of β-glucuronidase (GUS) in tobacco. The quantitative test revealed that GUS activity decreased with the decreasing of the promoter length, which indicated that there were no negative regulated elements in the EcGS1-P. The GUS expressions of EcGS1b-P in roots were significantly higher than those in leaves and stems, indicating EcGS1b-P to be a root-preferential promoter. Real-time Quantitative Reverse Transcription-Polymerase Chain Reaction (qRT-PCR) analysis of EcGS1b gene also showed higher expression in the roots of E.crassipes than in stems and leaves. Conclusions EcGS1b-P is a root-preferential promoter sequence. It can specifically drive the transcription of its downstream gene in root. This study will help to elucidate the regulatory mechanisms of EcGS1b tissue-specific expression and further study its other regulatory mechanisms in order to utilize E.crassipes in remediation of eutrophic water and control its overgrowth from the point of nutrient metabolism.

scholarly journals A Comparative Perspective on Functionally-Related, Intracellular Calcium Channels: The Insect Ryanodine and Inositol 1,4,5-trisphosphate Receptors

Biomolecules ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1031
Author(s):  
Umut Toprak ◽  
Cansu Doğan ◽  
Dwayne Hegedus
Keyword(s):  
Pest Control ◽  
Structural Organization ◽  
Insect Cells ◽  
Expression Patterns ◽  
Regulatory Mechanisms ◽  
Comparative Approach ◽  
Insect Development ◽  
Current Review ◽  
Inositol 1,4,5 Trisphosphate ◽  
Target Sites

Calcium (Ca2+) homeostasis is vital for insect development and metabolism, and the endoplasmic reticulum (ER) is a major intracellular reservoir for Ca2+. The inositol 1,4,5- triphosphate receptor (IP3R) and ryanodine receptor (RyR) are large homotetrameric channels associated with the ER and serve as two major actors in ER-derived Ca2+ supply. Most of the knowledge on these receptors derives from mammalian systems that possess three genes for each receptor. These studies have inspired work on synonymous receptors in insects, which encode a single IP3R and RyR. In the current review, we focus on a fundamental, common question: “why do insect cells possess two Ca2+ channel receptors in the ER?”. Through a comparative approach, this review covers the discovery of RyRs and IP3Rs, examines their structures/functions, the pathways that they interact with, and their potential as target sites in pest control. Although insects RyRs and IP3Rs share structural similarities, they are phylogenetically distinct, have their own structural organization, regulatory mechanisms, and expression patterns, which explains their functional distinction. Nevertheless, both have great potential as target sites in pest control, with RyRs currently being targeted by commercial insecticide, the diamides.

scholarly journals Melatonin as Master Regulator in Plant Growth, Development and Stress Alleviator for Sustainable Agricultural Production: Current Status and Future Perspectives

2020 ◽  
Vol 13 (1) ◽  
pp. 294
Author(s):  
Khadija Nawaz ◽  
Rimsha Chaudhary ◽  
Ayesha Sarwar ◽  
Bushra Ahmad ◽  
Asma Gul ◽  
...  
Keyword(s):  
Gene Expression ◽  
Plant Growth ◽  
Crop Production ◽  
Higher Plants ◽  
Regulation Of Gene Expression ◽  
Current Status ◽  
Master Regulator ◽  
Abiotic Stressors ◽  
Pathogenesis Related Protein ◽  
Growth Development

Melatonin, a multifunctional signaling molecule, is ubiquitously distributed in different parts of a plant and responsible for stimulating several physiochemical responses against adverse environmental conditions in various plant systems. Melatonin acts as an indoleamine neurotransmitter and is primarily considered as an antioxidant agent that can control reactive oxygen and nitrogen species in plants. Melatonin, being a signaling agent, induces several specific physiological responses in plants that might serve to enhance photosynthesis, growth, carbon fixation, rooting, seed germination and defense against several biotic and abiotic stressors. It also works as an important modulator of gene expression related to plant hormones such as in the metabolism of indole-3-acetic acid, cytokinin, ethylene, gibberellin and auxin carrier proteins. Additionally, the regulation of stress-specific genes and the activation of pathogenesis-related protein and antioxidant enzyme genes under stress conditions make it a more versatile molecule. Because of the diversity of action of melatonin, its role in plant growth, development, behavior and regulation of gene expression it is a plant’s master regulator. This review outlines the main functions of melatonin in the physiology, growth, development and regulation of higher plants. Its role as anti-stressor agent against various abiotic stressors, such as drought, salinity, temperatures, UV radiation and toxic chemicals, is also analyzed critically. Additionally, we have also identified many new aspects where melatonin may have possible roles in plants, for example, its function in improving the storage life and quality of fruits and vegetables, which can be useful in enhancing the environmentally friendly crop production and ensuring food safety.

Glutamine or glutamate release by the liver constitutes a major mechanism for nitrogen salvage

1997 ◽  
Vol 272 (2) ◽  
pp. G257-G264 ◽  
Author(s):  
C. Remesy ◽  
C. Moundras ◽  
C. Morand ◽  
C. Demigne
Keyword(s):  
Digestive Tract ◽  
Glutamate Release ◽  
Casein Diet ◽  
Postprandial Period ◽  
Major Mechanism ◽  
Low Protein ◽  
N Utilization ◽  
N Metabolism ◽  
Glutamine Synthesis ◽  
Negative Balance

The aim of the present study was to investigate mechanisms of N salvage by the liver when a diet is protein deficient. For this purpose, rats were adapted to a slightly deficient (11% casein) or moderately surfeit (22% casein) dietary protein level. Animals were sampled during the postprandial or the postabsorptive period, and fluxes across the digestive tract and liver were determined. During the postabsorptive period there was a negative balance of glutamine across the digestive tract in both diet groups. During the postprandial period the digestive balance of glutamine was still negative, despite a substantial supply of dietary glutamine and glutamate, suggesting that glutamine utilization is maximal during this period. There was a net production of glutamate and glutamine by the liver in both diet groups, but glutamine release was 73% higher in rats fed the low-protein diet. In these animals, because of the relatively low capacity of ureagenesis, N utilization was shifted toward glutamine synthesis: overall uptake of amino acids by the liver was approximately 5.3 micromol/min, and net release of glutamine + glutamate was approximately 2.9 micromol/min (hence a 55% cycling, on a molar basis). This cycling was only 12% in rats adapted to the 22% casein diet. When liver ammonia uptake was taken into account, N cycling showed parallel changes: 64% or 15% in rats adapted to the 11% or 22% casein diet, respectively. Besides glutamine delivery, glutamate was also released by the liver, representing an N source for extrasplanchnic tissues. With protein-deficient diets, hepatic glutamine delivery mainly serves to fulfill substrate needs for intestinal metabolism, which represents a mechanism for N salvage. This shift of N metabolism from urea toward glutamine production may imply a glutamate transfer from periportal to glutamine-synthesizing perivenous hepatocytes.

A computational history and outlook of nitrogen use efficiency and precipitation-optimal fertilisation timings in agriculture

2021 ◽  
Author(s):  
Daniel McKay Flecher ◽  
Siul Ruiz ◽  
Tiago Dias ◽  
Katherine Williams ◽  
Chiara Petroselli ◽  
...  
Keyword(s):  
Soil Moisture ◽  
Nitrogen Uptake ◽  
Nitrogen Use Efficiency ◽  
Nitrogen Efficiency ◽  
Nitrogen Use ◽  
Plant Nitrogen ◽  
Nitrogen Fertilisation ◽  
Plant Nitrogen Uptake ◽  
Use Efficiency ◽  
Rainfall Patterns

<p>Half of the nitrogen applied to arable-fields is lost through several processes linked to soil moisture. Low soil moisture limits nitrogen mobility reducing nitrogen-uptake while wetter conditions can increase nitrogen leaching. Rainfall ultimately governs soil moisture and the fate of nitrogen in soil. However, the interaction between rainfall and nitrogen use efficiency (NUE) remains poorly understood.</p> <p>We developed a field-scale modelling platform that describes coupled water and nitrogen transport, root growth and uptake, rainfall, the nitrogen-cycle and leaching to assess the NUE of split fertilisations with realistic rainfall patterns. The model was solved for every possible split fertilisation timing in 200+ growing seasons to determine optimal timings. Two previous field trials regarding rainfall and NUE had contrasting results: wetter years have enhanced fertiliser loss and drier years reduced plant nitrogen uptake. By choosing appropriate fertilisation timings in the model we could recreate the two contrasting trends and maintain variability in the data. However, we found by choosing other fertilisation timings we could mitigate the leaching in wetter years. Optimised timings could increase plant nitrogen uptake by up to 35% compared to the mean in dry years. Plant uptake was greatest under drier conditions due to mitigated leaching, but less likely to occur due to low nitrogen mobility. Optimal fertilisation timings varied dramatically depending on the rainfall patterns. Historic and projected rainfall patterns from 1950-2069 were used in the model. We found optimal NUE has a decrease from 2022-2040 due to increased heavy rainfall events and optimal fertilisation timings are later in the season but varied largely on a season-to-season basis.</p> <p>The results are a step towards achieving improved nitrogen efficiency in agriculture by using the ‘at the right time’ agronomic-strategy in the ‘4Rs’ of improved nitrogen fertilisation. Our results can help determine nitrogen fertilisation timings in changing climates.</p>

338 Nitrogen Use Efficiency Is Proportionally More Improved When Young Bulls Are Ranked on Residual Body Gain Rather Than on Residual Feed Intake

2021 ◽  
Vol 99 (Supplement_3) ◽  
pp. 187-188
Author(s):  
Pablo Guarnido Lopez ◽  
Isabelle Ortigues Marty ◽  
Cantalapiedra-Hijar Gonzalo
Keyword(s):  
Nitrogen Use Efficiency ◽  
Feed Intake ◽  
Linear Models ◽  
Residual Feed Intake ◽  
Residual Body ◽  
Nitrogen Use ◽  
N Metabolism ◽  
Use Efficiency ◽  
Δ 15N ◽  
Positive Correlations

Abstract Animals with superior feed efficiency (FE) may also have an improved nitrogen use efficiency (NUE), which would be beneficial to economic profitability while reducing environmental impacts. When genetically selecting animals on FE, it is preferable to use residual traits [e.g. residual feed intake (RFI) or residual body gain (RG)] rather than ratios because of their predictable genetic outcomes. We studied the relationship of RFI and RG with NUE, estimated from the validated 15N abundance in plasma, across two contrasted diets based on corn or grass silages. We evaluated FE of 588 (half by diet) Charolais bulls (545 ± 57 kg BW) from 12 experimental cohorts (different farms and periods) over 200 days. Before the end of the FE test, plasma was sampled and analyzed for δ 15N. NUE was related to FE through simple-linear models with variables previously corrected for the cohort and diet effects. The models’ slopes were standardized according to FE deviation in order to compare the response of NUE to FE between indices. Higher NUE was related to higher FE (P < 0.001), showing positive correlations with RG (r=-0.40) and negative with RFI (r=0.29). However, the standardized slope of NUE to RG was significantly higher (+28%; P < 0.05) than that of NUE to RFI. This stronger NUE relation to RG compared to RFI could reflect a higher potential of RG animals to deposit N as compared to a more conservational N metabolism in RFI individuals. Regarding diets, and despite the correction of NUE and FE for this effect, the slopes of NUE to FE were numerically (P > 0.05) higher (-16% and +36%; for RG and RFI) in corn-based diets, which agrees with superior NUE observed in corn-vs-grass diets. Results suggested that superior RG animals may present proportionally higher NUE than superior RFI animals, with even better results in corn-vs-grass diets.

The Sucrose Non-Fermenting 1-Related Protein Kinase 2 (SnRK2) Genes Are Multifaceted Players in Plant Growth, Development and Response to Environmental Stimuli

2019 ◽  
Vol 61 (2) ◽  
pp. 225-242 ◽  
Author(s):  
Xinguo Mao ◽  
Yuying Li ◽  
Shoaib Ur Rehman ◽  
Lili Miao ◽  
Yanfei Zhang ◽  
...  
Keyword(s):  
Protein Kinase ◽  
Protein Kinases ◽  
Specific Protein ◽  
Regulatory Mechanisms ◽  
Biological Processes ◽  
Related Protein ◽  
Biological Functions ◽  
Reversible Protein Phosphorylation ◽  
Growth Development ◽  
Regulatory Event

Abstract Reversible protein phosphorylation orchestrated by protein kinases and phosphatases is a major regulatory event in plants and animals. The SnRK2 subfamily consists of plant-specific protein kinases in the Ser/Thr protein kinase superfamily. Early observations indicated that SnRK2s are mainly involved in response to abiotic stress. Recent evidence shows that SnRK2s are multifarious players in a variety of biological processes. Here, we summarize the considerable knowledge of SnRK2s, including evolution, classification, biological functions and regulatory mechanisms at the epigenetic, post-transcriptional and post-translation levels.

scholarly journals Genome-Wide Differential DNA Methylation and miRNA Expression Profiling Reveals Epigenetic Regulatory Mechanisms Underlying Nitrogen-Limitation-Triggered Adaptation and Use Efficiency Enhancement in Allotetraploid Rapeseed

2020 ◽  
Vol 21 (22) ◽  
pp. 8453
Author(s):  
Ying-peng Hua ◽  
Ting Zhou ◽  
Jin-yong Huang ◽  
Cai-peng Yue ◽  
Hai-xing Song ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Epigenetic Modification ◽  
Lateral Roots ◽  
Regulatory Mechanisms ◽  
Crop Species ◽  
N Limitation ◽  
Genome Wide ◽  
Differentially Methylated Genes ◽  
N Metabolism ◽  
Use Efficiency

Improving crop nitrogen (N) limitation adaptation (NLA) is a core approach to enhance N use efficiency (NUE) and reduce N fertilizer application. Rapeseed has a high demand for N nutrients for optimal plant growth and seed production, but it exhibits low NUE. Epigenetic modification, such as DNA methylation and modification from small RNAs, is key to plant adaptive responses to various stresses. However, epigenetic regulatory mechanisms underlying NLA and NUE remain elusive in allotetraploid B. napus. In this study, we identified overaccumulated carbohydrate, and improved primary and lateral roots in rapeseed plants under N limitation, which resulted in decreased plant nitrate concentrations, enhanced root-to-shoot N translocation, and increased NUE. Transcriptomics and RT-qPCR assays revealed that N limitation induced the expression of NRT1.1, NRT1.5, NRT1.7, NRT2.1/NAR2.1, and Gln1;1, and repressed the transcriptional levels of CLCa, NRT1.8, and NIA1. High-resolution whole genome bisulfite sequencing characterized 5094 differentially methylated genes involving ubiquitin-mediated proteolysis, N recycling, and phytohormone metabolism under N limitation. Hypermethylation/hypomethylation in promoter regions or gene bodies of some key N-metabolism genes might be involved in their transcriptional regulation by N limitation. Genome-wide miRNA sequencing identified 224 N limitation-responsive differentially expressed miRNAs regulating leaf development, amino acid metabolism, and plant hormone signal transduction. Furthermore, degradome sequencing and RT-qPCR assays revealed the miR827-NLA pathway regulating limited N-induced leaf senescence as well as the miR171-SCL6 and miR160-ARF17 pathways regulating root growth under N deficiency. Our study provides a comprehensive insight into the epigenetic regulatory mechanisms underlying rapeseed NLA, and it will be helpful for genetic engineering of NUE in crop species through epigenetic modification of some N metabolism-associated genes.

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