Taxonomic and systematic implications of the revision of the phylogenetic relations in the genus Ectinogonia Spinola 1837 (Coleoptera: Buprestidae) of Central Chile

Zootaxa ◽  
2019 ◽  
Vol 4603 (1) ◽  
pp. 159
Author(s):  
SIMÓN ANGUITA-SALINAS ◽  
RODRIGO M. BARAHONA-SEGOVIA ◽  
ELIE POULIN ◽  
ÁLVARO ZÚÑIGA-REINOSO
Keyword(s):  
Phylogenetic Relationships ◽  
Morphological Variability ◽  
Haplotype Network ◽  
Species Level ◽  
The Other ◽  
Nominal Species ◽  
Central Chile ◽  
Phylogenetic Relations ◽  
Taxonomic History ◽  
Traditional Taxonomy

Ectinogonia Spinola 1837 is composed of 22 species to date, but its taxonomic history has been complex and is still unresolved. The species of the Santiagan Province of Central Chile are particularly complex because they show important morphological variability and overlapping traits, making species identification and delimitation difficult. The main goal of the present study is to show the phylogenetic relationships among species of Ectinogonia of the Santiagan province and discuss the taxonomic and systematic implications of our findings. Phylogeny reconstructions as well as a haplotype network disclosed four groups, partially inconsistent with the traditional taxonomy. Actually, the two Ectinogonia speciosa subspecies (E. speciosa speciosa (Germain 1856) and E. speciosa oscuripennis Cobos 1954) belong to two distinct clades, which are not reciprocally monophyletic, meaning that Ectinogonia speciosa is polyphyletic. On the other hand, the two other clades each contain, two nominal species (E. buquetii (Spinola 1837) and E. vidali Moore & Guerrero 2017, and E. isamarae Moore 1994 and E. speciosa oscuripennis Cobos 1954) without reciprocal haplotype sorting. These results suggest that: (1) E. speciosa oscuripennis should be raised to species level and (2) the following new synonymies are proposed: E. isamarae Moore 1994 is synonymised with E. oscuripennis Cobos 1954 and E. vidali Moore & Guerrero 2017 is synonymised with E. buquetii (Spinola 1837).

scholarly journals Comparative analysis and phylogenetic investigation of Hong Kong Ilex chloroplast genomes

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Bobby Lim-Ho Kong ◽  
Hyun-Seung Park ◽  
Tai-Wai David Lau ◽  
Zhixiu Lin ◽  
Tae-Jin Yang ◽  
...  
Keyword(s):  
Hong Kong ◽  
Comparative Analysis ◽  
Phylogenetic Relationships ◽  
Species Level ◽  
The Other ◽  
Trna Genes ◽  
Protein Coding ◽  
Chloroplast Genomes ◽  
Plant Group ◽  
Ilex Rotunda

AbstractIlex is a monogeneric plant group (containing approximately 600 species) in the Aquifoliaceae family and one of the most commonly used medicinal herbs. However, its taxonomy and phylogenetic relationships at the species level are debatable. Herein, we obtained the complete chloroplast genomes of all 19 Ilex types that are native to Hong Kong. The genomes are conserved in structure, gene content and arrangement. The chloroplast genomes range in size from 157,119 bp in Ilex graciliflora to 158,020 bp in Ilex kwangtungensis. All these genomes contain 125 genes, of which 88 are protein-coding and 37 are tRNA genes. Four highly varied sequences (rps16-trnQ, rpl32-trnL, ndhD-psaC and ycf1) were found. The number of repeats in the Ilex genomes is mostly conserved, but the number of repeating motifs varies. The phylogenetic relationship among the 19 Ilex genomes, together with eight other available genomes in other studies, was investigated. Most of the species could be correctly assigned to the section or even series level, consistent with previous taxonomy, except Ilex rotunda var. microcarpa, Ilex asprella var. tapuensis and Ilex chapaensis. These species were reclassified; I. rotunda was placed in the section Micrococca, while the other two were grouped with the section Pseudoaquifolium. These studies provide a better understanding of Ilex phylogeny and refine its classification.

scholarly journals A new Late Eocene primate from the Krabi Basin (Thailand) and the diversity of Palaeogene anthropoids in southeast Asia

2013 ◽  
Vol 280 (1771) ◽  
pp. 20132268 ◽  
Author(s):  
Yaowalak Chaimanee ◽  
Olivier Chavasseau ◽  
Vincent Lazzari ◽  
Adélaïde Euriat ◽  
Jean-Jacques Jaeger
Keyword(s):  
Phylogenetic Relationships ◽  
Evolutionary History ◽  
Middle Eocene ◽  
Late Eocene ◽  
The Other ◽  
Crown Group ◽  
Phylogenetic Relations ◽  
Stem Group ◽  
Morphological Adaptations ◽  
Anthropoid Primates

According to the most recent discoveries from the Middle Eocene of Myanmar and China, anthropoid primates originated in Asia rather than in Africa, as was previously considered. But the Asian Palaeogene anthropoid community remains poorly known and inadequately sampled, being represented only from China, Myanmar, Pakistan and Thailand. Asian Eocene anthropoids can be divided into two distinct groups, the stem group eosimiiforms and the possible crown group amphipithecids, but the phylogenetic relationships between these two groups are not well understood. Therefore, it is critical to understand their evolutionary history and relationships by finding additional fossil taxa. Here, we describe a new small-sized fossil anthropoid primate from the Late Eocene Krabi locality in Thailand, Krabia minuta , which shares several derived characters with the amphipithecids. It displays several unique dental characters, such as extreme bunodonty and reduced trigon surface area, that have never been observed in other Eocene Asian anthropoids. These features indicate that morphological adaptations were more diversified among amphipithecids than was previously expected, and raises the problem of the phylogenetic relations between the crown anthropoids and their stem group eosimiiforms, on one side, and the modern anthropoids, on the other side.

Phylogenetic relationships and biogeographic considerations of four new species of Cnemalobus (Coleoptera: Carabidae) from Patagonia

2007 ◽  
Vol 38 (3) ◽  
pp. 267-292 ◽  
Author(s):  
Eider Ruiz-Manzanos ◽  
Sergio Roig-Juñent ◽  
Federico Agrain ◽  
Paula Sackmann ◽  
Marcelo Tognelli ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Relationships ◽  
Cladistic Analysis ◽  
The Other ◽  
Sister Species ◽  
Central Chile ◽  
Mountain Habitats ◽  
Geographical Scale ◽  
Northwestern Region ◽  
Apical Group

AbstractFour new species of Cnemalobus Guérin-Ménéville, 1838 (Carabidae) from the northern steppe of Patagonia and extra-Andean mountains are described in this work. Two of these species, Cnemalobus nevado sp. n. and Cnemalobus diamante sp. n., are from the Payunia (Argentina), the northernmost region of Patagonia. One species, C. somuncura sp. n., is from the vicinity of the Somuncurá Plateau. The other species, Cnemalobus troll sp. n., is from the northwestern steppe. Illustrations and keys for these new species are provided. The phylogenetic relationships among the new species were defined using a cladistic analysis for the genus Cnemalobus, based on 56 characters of the external morphology and male and female genitalia. The cladogram showed that C. nevado sp. n. and C. diamante sp. n. comprise a monophyletic group that is the adelphotaxon of an apical clade of species that mainly inhabit mountain habitats in central Chile. Cnemalobus somuncura sp. n. and C. troll sp. n. are also sister species and comprise the apical group of the Patagonian species. Cnemalobus nevado and C. diamante occur in the Payunia, and their distribution is restricted to different mountains and are isolated from each other. Given that these two mountains are 200 km apart, it is not likely that dispersal has occurred in these large and flightless species. The ancestral species might have been broadly distributed, and, as a result of habitat changes, they became isolated into restricted habitats in the upper part of each mountain, where speciation might have occurred. The other two new species, C. somuncura and C. troll, are placed in the group of Patagonian species that inhabit the lowlands or plateaus. Distributional data, together with phylogeny, showed that the sister species of Cnemalobus have an allopatric distribution. Strict sympatry (same locality) occurs in the northwestern region of the Patagonian Steppe. Nevertheless, this strict sympatry may be an artifact of geographical scale. For example, within the same area, some species may inhabit grasslands next to forests, while other species inhabit only steppe areas.

scholarly journals Taxonomy of Echinostoma revolutum and 37-Collar-Spined Echinostoma spp.: A Historical Review

2020 ◽  
Vol 58 (4) ◽  
pp. 343-371
Author(s):  
Jong-Yil Chai ◽  
Jaeeun Cho ◽  
Taehee Chang ◽  
Bong-Kwang Jung ◽  
Woon-Mok Sohn
Keyword(s):  
Phylogenetic Relationships ◽  
Historical Review ◽  
Its Region ◽  
Molecular Techniques ◽  
The Other ◽  
Nuclear Genes ◽  
Nominal Species ◽  
Molecular Analyses ◽  
Echinostoma Revolutum ◽  
History Of

Echinostoma flukes armed with 37 collar spines on their head collar are called as 37-collar-spined Echinostoma spp. (group) or ‘Echinostoma revolutum group’. At least 56 nominal species have been described in this group. However, many of them were morphologically close to and difficult to distinguish from the other, thus synonymized with the others. However, some of the synonymies were disagreed by other researchers, and taxonomic debates have been continued. Fortunately, recent development of molecular techniques, in particular, sequencing of the mitochondrial (nad1 and cox1) and nuclear genes (ITS region; ITS1-5.8S-ITS2), has enabled us to obtain highly useful data on phylogenetic relationships of these 37-collar-spined Echinostoma spp. Thus, 16 different species are currently acknowledged to be valid worldwide, which include E. revolutum, E. bolschewense, E. caproni, E. cinetorchis, E. deserticum, E. lindoense, E. luisreyi, E. mekongi, E. miyagawai, E. nasincovae, E. novaezealandense, E. paraensei, E. paraulum, E. robustum, E. trivolvis, and Echinostoma sp. IG of Georgieva et al., 2013. The validity of the other 10 species is retained until further evaluation, including molecular analyses; E. acuticauda, E. barbosai, E. chloephagae, E. echinatum, E. jurini, E. nudicaudatum, E. parvocirrus, E. pinnicaudatum, E. ralli, and E. rodriguesi. In this review, the history of discovery and taxonomic debates on these 26 valid or validity-retained species are briefly reviewed.

Phylogenetic analysis of the subfamily Hylodinae (Anura, Leptodactylidae) based on morphological characters

2005 ◽  
Vol 26 (2) ◽  
pp. 139-147 ◽  
Author(s):  
Francisca do Val ◽  
Paulo Nuin
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Maximum Parsimony ◽  
Morphological Characters ◽  
The Other ◽  
The Family

AbstractThe systematics and phylogenetic relationships of the family Leptodactylidae are controversial as is the intrafamilial phylogeny of the leptodactylids. Here we analyze the relationships of the leptodactylid subfamily Hylodinae. This subfamily has been considered to be monophyletic and composed of three genera, Hylodes, Crossodactylus and Megaelosia. In the present study 49 characters were used, based on different studies on Leptodactylidae phylogeny. Maximum parsimony methods with unweighted and successively weighted characters were used to estimate the phylogeny of the Hylodinae. Upon analysis, the data provided further evidence of the monophyletic status of the three genera, with Megaelosia being the basal genus and the other two genera being sister taxa. The analysis with successive weighting results in a more resolved topology of the species subgroups of the genus Hylodes and separates this genus from Crossodactylus and confirms that the hylodines are monophyletic.

scholarly journals High Intraspecific Genetic Diversity ofNocardia brasiliensis, a Pathogen Responsible for Cutaneous Nocardiosis Found in France: Phylogenetic Relationships by Usingsodandhsp65Genes

2018 ◽  
Vol 2018 ◽  
pp. 1-10
Author(s):  
D. Kosova-Maali ◽  
E. Bergeron ◽  
Y. Maali ◽  
T. Durand ◽  
J. Gonzalez ◽  
...  
Keyword(s):  
Phylogenetic Relationships ◽  
Genetic Characterization ◽  
Haplotype Diversity ◽  
Species Level ◽  
Genotype 1 ◽  
Tropical Regions ◽  
High Bootstrap ◽  
Almost All ◽  
A New Species ◽  
Immunocompetent Patients

This study aims at genetic characterization and phylogenetic relationships ofNocardia brasiliensisfocusing by using housekeepingrrs,hsp65,andsodAgenes.N. brasiliensisis the species responsible for 80% of cases of actinomycetoma, one form of cutaneous nocardiosis which occurs mainly in tropical regions reaching immunocompetent patients in which the disease can lead to amputation. We analyze 36 indigenous cases ofN. brasiliensisthat happened in France. Phylogenetic analysis targetingrrsgene showed no robustness at phylogenetic nodes level. However, the use of a concatenation ofhsp65andsodAgenes showed that the tested strains surprisingly ranked in 3 well-defined genotypes. Genotypes 2 and 3 were phylogenetically closer to each other and both diverged from genotype 1 sustained by a high bootstrap of 81%. This last genotype hosts all the cases of pulmonary forms (3), the sole cerebral form, and almost all the cases of immunocompromised patients (3 out of 4). Moreover, excepting one of them, all the strains belonging to this group present a susceptibility to imipenem which is not the case in the other genotypes that rarely count among them strains being susceptible to this drug. The haplotype diversity (Hd) ofhsp65(0.927) andsodA(0.885) genes was higher than that ofrrs(0.824). For this gene, we obtained 16 polymorphic sites whereas, forhsp65andsodAgenes, up to 27 and 29 were identified, respectively. This study reveals that these two genes have an important genetic discriminatory power for the evaluation of the intraspecies genetic variability ofN. brasiliensisand they may be useful for identification purposes at species level. This study also reveals the possible existence of a new species harbored by genotype 1.

A Review of the Morid Fish Genus Halargyreus with First Records from the Western North Atlantic

1968 ◽  
Vol 25 (5) ◽  
pp. 877-901 ◽  
Author(s):  
Wilfred Templeman
Keyword(s):  
New Zealand ◽  
North Atlantic ◽  
The Other ◽  
Nominal Species ◽  
Meristic Characters ◽  
Western Atlantic ◽  
North Central ◽  
Northeast Atlantic ◽  
The North

Three specimens of Halargyreus johnsonii taken on the southwestern and southeastern slopes of the Grand Bank in 1959 and 1964 are apparently the first records of this species and genus from the western Atlantic. These specimens are compared with the holotypes of H. johnsonii Günther and of H. brevipes Vaillant and with the syntypes of H. affinis Collett and also with specimens identified as H. affinis from the north-central and northeast Atlantic and with specimens of H. johnsonii from Madeira and New Zealand. These three nominal species are also compared. Is it concluded that for the present all North Atlantic specimens may be referred to H. johnsonii and that the other two species names should be considered as junior synonyms of H. johnsonii.The New Zealand specimens of Halargyreus, described by Günther (1887, Challenger Rept., 22(Zoology), p. 1–268) as H. johnsonii, have higher numbers for some meristic characters than Atlantic specimens of H. johnsonii but these differences are not too great to be possibly due to environmental differences. Pending the study of additional specimens in better condition, these New Zealand specimens are tentatively allowed to remain as H. johnsonii.

scholarly journals Behaviour of cranes (family Gruidae) mirrors their phylogenetic relationships

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Nela Nováková ◽  
Jan Robovský
Keyword(s):  
Phylogenetic Relationships ◽  
Phylogenetic Signal ◽  
Species Level ◽  
Monophyletic Group ◽  
Molecular Tree ◽  
Behavioural Repertoire ◽  
Over Time

Abstract Background The behavioural repertoire of every species evolved over time and its evolution can be traced through the phylogenetic relationships in distinct groups. Cranes (family Gruidae) represent a small, old, monophyletic group with well-corroborated phylogenetic relationships on the species level, and at the same time they exhibit a complex and well-described behavioural repertoire. Methods We therefore investigated the evolution of behavioural traits of cranes in a phylogenetic context using several phylogenetic approaches and two types of trait scoring. The cranes exhibit more than a hundred behavioural displays, almost one third of which may be phylogenetically informative. Results More than half of the analysed traits carry a significant phylogenetic signal. The ancestor of cranes already exhibited a quite complex behavioural repertoire, which remained unchanged in Balearicinae but altered greatly in Gruinae, specifically by the shedding of traits rather than their creation. Trait scoring has an influence on results within the Gruinae, primarily in genera Bugeranus and Anthropoides. Conclusions Albeit the behavioural traits alone cannot be used for resolving species-level relationships within the Gruidae, when optimized on molecular tree, they can help us to detect interesting evolutionary transformations of behaviour repertoire within Gruiformes. The Limpkin (Aramus guarauna) seems to be the most enigmatic species and should be studied in detail for its behavioural repertoire, which may include some precursors of crane behavioural traits.

scholarly journals Complete chloroplast genome of Hordeum brevisubulatum: Genome organization, synonymous codon usage, phylogenetic relationships, and comparative structure analysis

PLoS ONE ◽  
2021 ◽  
Vol 16 (12) ◽  
pp. e0261196
Author(s):  
Guangxin Cui ◽  
Chunmei Wang ◽  
Xiaoxing Wei ◽  
Hongbo Wang ◽  
Xiaoli Wang ◽  
...  
Keyword(s):  
Phylogenetic Relationships ◽  
Genome Engineering ◽  
De Novo ◽  
Synonymous Codon ◽  
Northern China ◽  
Synonymous Codon Usage ◽  
The Other ◽  
Coding Regions ◽  
Cp Genome ◽  
Hordeum Brevisubulatum

Background Hordeum brevisubulatum, known as fine perennial forage, is used for soil salinity improvement in northern China. Chloroplast (cp) genome is an ideal model for assessing its genome evolution and the phylogenetic relationships. We de novo sequenced and analyzed the cp genome of H. brevisubulatum, providing a fundamental reference for further studies in genetics and molecular breeding. Results The cp genome of H. brevisubulatum was 137,155 bp in length with a typical quadripartite structure. A total of 130 functional genes were annotated and the gene of accD was lost in the process of evolution. Among all the annotated genes, 16 different genes harbored introns and the genes of ycf3 and rps12 contained two introns. Parity rule 2 (PR2) plot analysis showed that majority of genes had a bias toward T over A in the coding strand in all five Hordeum species, and a slight G over C in the other four Hordeum species except for H. bogdanil. Additionally, 52 dispersed repeat sequences and 182 simple sequence repeats were identified. Moreover, some unique SSRs of each species could be used as molecular markers for further study. Compared to the other four Hordeum species, H. brevisubulatum was most closely related to H. bogdanii and its cp genome was relatively conserved. Moreover, inverted repeat regions (IRa and IRb) were less divergent than other parts and coding regions were relatively conserved compared to non-coding regions. Main divergence was presented at the SSC/IR border. Conclusions This research comprehensively describes the architecture of the H. brevisubulatum cp genome and improves our understanding of its cp biology and genetic diversity, which will facilitate biological discoveries and cp genome engineering.

scholarly journals Comparative analysis of populations of the Balkan endemic species Daphne malyana Blecic (Thymeleaceae)

2010 ◽  
Vol 62 (4) ◽  
pp. 1151-1162 ◽  
Author(s):  
Marina Juskovic ◽  
P. Vasiljevic ◽  
V. Randjelovic ◽  
V. Stevanovic ◽  
Branka Stevanovic
Keyword(s):  
Principal Component Analysis ◽  
Comparative Analysis ◽  
Endemic Species ◽  
Morphological Variability ◽  
Principal Component ◽  
Balkan Peninsula ◽  
Canonical Discriminant Analysis ◽  
The Other ◽  
Isolated Populations ◽  
Microclimate Conditions

Daphne malyana Blecic (Thymeleaceae) is an endemic species of the western part of the Balkan Peninsula, distributed in the mountains, canyons and gorges of N. Montenegro, E. Bosnia and W. Serbia. The comparative morphoanatomic investigations have included four distantly separated populations of the species D. malyana, i.e. two from Serbia, from the ravines of Sokoline and Vranjak on Mt. Tara, and two from Montenegro, in the canyons of the Tara and Piva rivers. Comparative morphoanatomical studies have shown the presence of general adaptive characteristics of a specific, conservative xeromorphic type, slightly differing in each population. Principal component analysis (PCA) and canonical discriminant analysis (CDA) of 20 morphoanatomical characteristics of the leaves and stems have shown a clear distinction between the populations from the river Piva canyon (Montenegro) and those from the Sokoline ravine (Serbia), on one side, and those of Vranjak gorge (Serbia) and of the river Tara canyon (Montenegro) on the other side. It may be assumed that the mild morphological variability of the isolated populations of the Balkan endemic species D. malyana in the canyons and gorges seem to have been affected by the microclimate conditions in their habitats.

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