scholarly journals Transcriptome analysis of five ovarian stages reveals gonad maturation in female Macrobrachium nipponense

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Yuning Zhang ◽  
Sufei Jiang ◽  
Hui Qiao ◽  
Yiwei Xiong ◽  
Hongtuo Fu ◽  
...  
Keyword(s):  
Expression Patterns ◽  
Economic Benefits ◽  
Reproductive Period ◽  
Ovary Development ◽  
Gonad Maturation ◽  
Ovarian Maturation ◽  
Transcriptome Data ◽  
Macrobrachium Nipponense ◽  
Important Species ◽  
Reference Information

Abstract Background Macrobrachium nipponense is an economically important species of freshwater shrimp in China. Unlike other marine shrimps, the ovaries in adult female M. nipponense can mature rapidly and periodically during the reproductive period, but the resulting high stocking densities and environmental deterioration can negatively impact the harvest yield and economic benefits. To better understand ovary development in female M. nipponense, we performed systematic transcriptome sequencing of five different stages of ovarian maturation. Results We obtained 255,966 Gb of high quality transcriptome data from 15 samples. Of the 105,082 unigenes that were selected, 30,878 were successfully annotated. From these unigenes, we identified 17 differentially expressed genes and identified three distinct gene expression patterns related to different biological processes. We found that cathepins, legumains, and cystatin were enriched in the lysosome pathway, and they are related to vitellogenin hydrolysis. Additionally, we found that myosin heavy chain 67 participated in oocyte excretion. Conclusions We provide the first detailed transcriptome data relating to the ovarian maturation cycle in M. nipponense. Our results provide important reference information about the genomics, molecular biology, physiology, and population genetics of M. nipponense and other crustaceans. It is conducive to further solve the problem of M. nipponense rapid ovarian maturation from the aspects of energy supply and cell division.

Salinity acclimation alters acid and alkaline phosphatase expression and histological changes in the hepatopancreas of the oriental river prawn Macrobrachium nipponense (De Haan, 1849) (Decapoda: Caridea: Palaemonidae)

2020 ◽  
Author(s):  
Shengming Sun ◽  
Ning Wang ◽  
Mengru Zhu
Keyword(s):  
Alkaline Phosphatase ◽  
High Salinity ◽  
Expression Patterns ◽  
Histological Structure ◽  
Additional Energy ◽  
Salinity Acclimation ◽  
Macrobrachium Nipponense ◽  
Important Species ◽  
Oriental River Prawn ◽  
Rapid Amplification

Abstract The oriental river prawn, Macrobrachium nipponense (De Haan, 1849), an economically important species, can live in freshwater and brackish water environments, but molecular mechanism of adaptation to varying salinity levels is still poorly understood. We aimed to investigate the effects of four different salinities (0, 6, 12, and 18‰) on metabolic responses, histological structure, and expression patterns of acid phosphatase (ACP) and alkaline phosphatase (AKP) in the hepatopancreas. The full-length cDNAs of ACP and AKP of M. nipponense (designated MnACP and MnAKP, respectively) were obtained by rapid-amplification of cDNA ends (RACE)-PCR. Immunofluorescence experiments confirmed that MnAKP is located in the cell membrane of the hepatopancreas. Both genes were expressed in all seven studied tissues, with highest expression in the hepatopancreas by quantitative real-time PCR. The mRNA expression levels and enzyme activities of MnACP and MnAKP in the hepatopancreas significantly increased in 18‰ salinity group compared to other groups. Measurements of glycogen, triglycerides, and total cholesterol levels suggested that prawns can adjust the energy metabolism in a way to provide additional energy under unsuitable salinity. Besides, prawns at high salinity produced higher B-cells and lower number of R-cells in hepatopancreatic tubules, also suggesting enhance the metabolic function of the hepatopancreas under high salinity. Our results provide a better understanding for the mechanism regulating salinity acclimation in the oriental river prawn.

Non-coding RNA Expression Patterns of Two Different Teleost Gonad Maturation Stages

2020 ◽  
Vol 22 (5) ◽  
pp. 683-695
Author(s):  
Maria Papadaki ◽  
Elisavet Kaitetzidou ◽  
Constantinos C. Mylonas ◽  
Elena Sarropoulou
Keyword(s):  
Expression Patterns ◽  
Gonad Maturation ◽  
Rna Expression ◽  
Non Coding Rna ◽  
Maturation Stages

scholarly journals Identification of Flower-Specific Promoters through Comparative Transcriptome Analysis in Brassica napus

2019 ◽  
Vol 20 (23) ◽  
pp. 5949 ◽  
Author(s):  
Yan Li ◽  
Caihua Dong ◽  
Ming Hu ◽  
Zetao Bai ◽  
Chaobo Tong ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Candidate Genes ◽  
Oilseed Rape ◽  
Agronomic Traits ◽  
Expression System ◽  
Expression Patterns ◽  
Gus Expression ◽  
Pcr Analysis ◽  
Transcriptome Data ◽  
Sclerotinia Stem Rot

Brassica napus (oilseed rape) is an economically important oil crop worldwide. Sclerotinia stem rot (SSR) caused by Sclerotinia sclerotiorum is a threat to oilseed rape production. Because the flower petals play pivotal roles in the SSR disease cycle, it is useful to express the resistance-related genes specifically in flowers to hinder further infection with S. sclerotiorum. To screen flower-specific promoters, we first analyzed the transcriptome data from 12 different tissues of the B. napus line ZS11. In total, 249 flower-specific candidate genes with high expression in petals were identified, and the expression patterns of 30 candidate genes were verified by quantitative real-time transcription-PCR (qRT-PCR) analysis. Furthermore, two novel flower-specific promoters (FSP046 and FSP061 promoter) were identified, and the tissue specificity and continuous expression in petals were determined in transgenic Arabidopsis thaliana with fusing the promoters to β-glucuronidase (GUS)-reporter gene. GUS staining, transcript expression pattern, and GUS activity analysis indicated that FSP046 and FSP061 promoter were strictly flower-specific promoters, and FSP046 promoter had a stronger activity. The two promoters were further confirmed to be able to direct GUS expression in B. napus flowers using transient expression system. The transcriptome data and the flower-specific promoters screened in the present study will benefit fundamental research for improving the agronomic traits as well as disease and pest control in a tissue-specific manner.

scholarly journals Effect of light-emitting diodes (LEDs) on snow crab catch rates in the Barents Sea pot fishery

2019 ◽  
Vol 76 (6) ◽  
pp. 1893-1901 ◽  
Author(s):  
Khanh Q Nguyen ◽  
Odd-Børre Humborstad ◽  
Svein Løkkeborg ◽  
Paul D Winger ◽  
Shannon M Bayse
Keyword(s):  
Capital Investment ◽  
Barents Sea ◽  
Economic Benefits ◽  
Financial Strain ◽  
Snow Crab ◽  
Catch Per Unit Effort ◽  
Important Species ◽  
Light Emitting ◽  
The Barents Sea ◽  
Catch Rates

Abstract Snow crab (Chionoecetes opilio) has become an important species for the Norwegian seafood industry since its first commercial harvest in 2012. However, periodically catch rates can be low, causing a financial strain on the fishery. Thus, improving the catch rate of existing pot designs has the potential to significantly improve the profitability of fishing enterprises. In this study, we investigated whether the addition of low-powered purple and white light-emitting diode (LED) fishing lights inside the pots could improve catch rates of snow crab in the Barents Sea. Results showed that pots with purple lights harvested a 12.8% higher catch per unit effort (CPUE; number of crab per pot) of legal-sized crab, which was significantly more than the control pots (p = 0.035); pots with white lights did not catch significantly more crab (p > 0.05). Pots equipped with only light (no bait) caught very few crabs and were not considered a viable alternative. Although purple LEDs increased snow crab capture, the economic benefits of using underwater lights in pots remains unclear given the high capital investment required.

scholarly journals Expression Analysis of XTH in Stem Swelling of Stem Mustard and Selection of Reference Genes

Genes ◽  
2020 ◽  
Vol 11 (1) ◽  
pp. 113 ◽  
Author(s):  
Mengyao Li ◽  
Fangjie Xie ◽  
Qi He ◽  
Jie Li ◽  
Jiali Liu ◽  
...  
Keyword(s):  
Gene Expression ◽  
Reference Genes ◽  
Expression Patterns ◽  
Regulatory Mechanisms ◽  
Future Research ◽  
Transcriptome Data ◽  
Accurate Analysis ◽  
Report Analysis ◽  
The Stability ◽  
Selection Of

Accurate analysis of gene expression requires selection of appropriate reference genes. In this study, we report analysis of eight candidate reference genes (ACTIN, UBQ, EF-1α, UBC, IF-4α, TUB, PP2A, and HIS), which were screened from the genome and transcriptome data in Brassica juncea. Four statistical analysis softwares geNorm, NormFinder, BestKeeper, and RefFinder were used to test the reliability and stability of gene expression of the reference genes. To further validate the stability of reference genes, the expression levels of two CYCD3 genes (BjuB045330 and BjuA003219) were studied. In addition, all genes in the xyloglucan endotransglucosylase/hydrolase (XTH) family were identified in B. juncea and their patterns at different periods of stem enlargement were analyzed. Results indicated that UBC and TUB genes showed stable levels of expression and are recommended for future research. In addition, XTH genes were involved in regulation of stem enlargement expression. These results provide new insights for future research aiming at exploring important functional genes, their expression patterns and regulatory mechanisms for mustard development.

Production of donor-derived eggs after ovarian germ cell transplantation into the gonads of adult, germ cell-less, triploid hybrid fish†

2020 ◽  
Vol 103 (6) ◽  
pp. 1289-1299
Author(s):  
Dongdong Xu ◽  
Tasuku Yoshino ◽  
Marcelo de Bello Cioffi ◽  
Hiroyuki Yoshikawa ◽  
Yasuko Ino ◽  
...  
Keyword(s):  
Germ Cell ◽  
Cell Transplantation ◽  
Dna Sequences ◽  
Egg Production ◽  
Expression Patterns ◽  
Ovary Development ◽  
Specific Gene ◽  
Suitable Model ◽  
Triploid Hybrid ◽  
Germ Cell Transplantation

Abstract In animals, spermatogonial transplantation in sterile adult males is widely developed; however, despite its utility, ovarian germ cell transplantation is not well developed. We previously showed that the interspecific hybrid offspring of sciaenid was a suitable model for germ cell transplantation studies as they have germ cell-less gonads. However, all these gonads have testis-like characteristics. Here, we tested whether triploidization in hybrid embryos could result in germ cell-less ovary development. Gonadal structure dimorphism and sex-specific gene expression patterns were examined in 6-month-old triploid hybrids (3nHybs). Thirty-one percent of 3nHybs had germ cell-less gonads with an ovarian cavity. cyp19a1a and foxl2, ovarian differentiation-related genes, were expressed in these gonads, whereas dmrt1 and vasa were not expressed, suggesting ovary-like germ cell-less gonad development. Some (26%) 3nHybs had testis-like germ cell-less gonads. Ovarian germ cells collected from homozygous green fluorescent protein (GFP) transgenic blue drum (BD) (Nibea mitsukurii) were transplanted into 6-month-old 3nHybs gonads via the urogenital papilla or oviduct. After 9 months, the recipients were crossed with wild type BD. Among the six 3nHyb recipients that survived, one female and one male produced fertile eggs and motile sperm carrying gfp-specific DNA sequences. Progeny tests revealed that all F1 offspring possessed gfp-specific DNA sequences, suggesting that these recipients produced only donor-derived eggs or sperm. Histological observation confirmed donor-derived gametogenesis in the 3nHyb recipients’ gonads. Overall, triploidization reduces male-biased sex differentiation in germ cell-less gonads. We report, for the first time, donor-derived egg production in an animal via direct ovarian germ cell transplantation into a germ cell-less ovary.

scholarly journals Drosophila insulin-like peptide 8 (DILP8) in ovarian follicle cells regulates ovulation and metabolism

2020 ◽  
Author(s):  
Sifang Liao ◽  
Dick R. Nässel
Keyword(s):  
Adult Female ◽  
Developmental Stages ◽  
Ovarian Follicle ◽  
Expression Patterns ◽  
Follicle Cell ◽  
Follicle Cells ◽  
Ovary Development ◽  
Peripheral Neurons ◽  
Efferent Neurons

AbstractIn Drosophila eight insulin-like peptides (DILP1-8) are encoded on separate genes. These DILPs are characterized by unique spatial and temporal expression patterns during the lifecycle. Whereas functions of several of the DILPs have been extensively investigated at different developmental stages, the role of DILP8 signaling is primarily known from larvae and pupae where it couples organ growth and developmental transitions. In adult female flies, a study showed that a specific set of neurons that express the DILP8 receptor, Lgr3, is involved in regulation of reproductive behavior. Here, we further investigated the expression of dilp8/DILP8 and Lgr3 in adult female flies and the functional role of DILP8 signaling. The only site where we found both dilp8 expression and DILP8 immunolabeling was in follicle cells of mature ovaries. Lgr3 expression was detected in numerous neurons in the brain and ventral nerve cord, a small set of peripheral neurons innervating the abdominal heart, as well as in a set of follicle cells close to the oviduct. Ovulation was affected in dilp8 mutants as well as after dilp8-RNAi using dilp8 and follicle cell Gal4 drivers. More eggs were retained in the ovaries and fewer were laid, indicating that DILP8 is important for ovulation. Our data suggest that DILP8 signals locally to Lgr3 expressing follicle cells as well as systemically to Lgr3 expressing efferent neurons in abdominal ganglia that innervate oviduct muscle. Thus, DILP8 may act at two targets to regulate ovulation: follicle cell rupture and oviduct contractions. Furthermore, we could show that manipulations of dilp8 expression affect food intake and starvation resistance. Possibly this reflects a feedback signaling between ovaries and the CNS that ensures nutrients for ovary development. In summary, it seems that DILP8 signaling in regulation of reproduction is an ancient function, conserved in relaxin signaling in mammals.

scholarly journals Characterization and expression analysis of growth regulating factor (GRF) family genes in cucumber

2018 ◽  
Vol 70 (4) ◽  
pp. 629-637 ◽  
Author(s):  
Yong Zhou ◽  
Lingli Ge ◽  
Guanghua Li ◽  
Lunwei Jiang ◽  
Yingui Yang
Keyword(s):  
Stress Responses ◽  
Expression Patterns ◽  
Plant Stress ◽  
Biological Processes ◽  
Transcriptome Data ◽  
Conserved Domains ◽  
Plant Stress Responses ◽  
Salt And Drought Stress ◽  
Profiling Analysis ◽  
Different Tissues

The growth regulating factor (GRF) family is a conserved class of transcription factors involved in various biological processes in plants. However, there have been only a few studies of the GRF family genes in cucumber, Cucumis sativus (Cs). In this study, we identified and characterized 8 CsGRF genes in cucumber. Two highly conserved domains, QLQ and WRC, were identified to be present in all CsGRF proteins. In addition, three less conserved domains (FFD, TQL, and GGPL) were also detected in some CsGRF members. Based on phylogenetic analysis, the GRF genes from cucumber, Arabidopsis, tomato, rice and maize could be classified into 10 groups, and CsGRFs were clustered closer with the GRF genes from dicots (Arabidopsis and tomato) than with those from monocots (rice and maize). Promoter analysis revealed that the CsGRF genes were involved in cucumber growth and development as well as in responses to various hormones and stresses. Transcriptome data showed that the CsGRF genes have distinct expression patterns in different tissues, especially in ovaries and leaves. Expression profiling analysis indicated that all CsGRF genes were responsive to salt and drought stress treatments. These results demonstrate that the cucumber GRF gene family may function in organ development and plant stress responses.

scholarly journals Identification and characterization of a novel multi-stress responsive gene in Arabidopsis

PLoS ONE ◽  
2020 ◽  
Vol 15 (12) ◽  
pp. e0244030
Author(s):  
Faiza Tawab ◽  
Iqbal Munir ◽  
Zeeshan Nasim ◽  
Mohammad Sayyar Khan ◽  
Saleha Tawab ◽  
...  
Keyword(s):  
Expression Patterns ◽  
Survival Rates ◽  
Crop Productivity ◽  
Cell Wall Protein ◽  
Transcriptome Data ◽  
Gus Assay ◽  
Transgenic Lines ◽  
Responsive Gene ◽  
Identification And Characterization

Abiotic stresses especially salinity, drought and high temperature result in considerable reduction of crop productivity. In this study, we identified AT4G18280 annotated as a glycine-rich cell wall protein-like (hereafter refer to as GRPL1) protein as a potential multistress-responsive gene. Analysis of public transcriptome data and GUS assay of pGRPL1::GUS showed a strong induction of GRPL1 under drought, salinity and heat stresses. Transgenic plants overexpressing GRPL1-3HA showed significantly higher germination, root elongation and survival rate under salt stress. Moreover, the 35S::GRPL1-3HA transgenic lines also showed higher survival rates under drought and heat stresses. GRPL1 showed similar expression patterns with Abscisic acid (ABA)-pathway genes under different growth and stress conditions, suggesting a possibility that GRPL1 might act in the ABA pathway that is further supported by the inability of ABA-deficient mutant (aba2-1) to induce GRPL1 under drought stress. Taken together, our data presents GRPL1 as a potential multi-stress responsive gene working downstream of ABA.

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