scholarly journals Comparative ribosome profiling reveals distinct translational landscapes of salt-sensitive and -tolerant rice

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Xiaoyu Yang ◽  
Bo Song ◽  
Jie Cui ◽  
Lina Wang ◽  
Shuoshuo Wang ◽  
...  
Keyword(s):  
Salt Stress ◽  
Stress Responses ◽  
Adaptive Strategy ◽  
Soil Salinization ◽  
Ribosome Profiling ◽  
Salt Tolerant ◽  
Coding Regions ◽  
Ribosome Stalling ◽  
Significant Research ◽  
Salt Susceptible

Abstract Background Soil salinization represents a serious threat to global rice production. Although significant research has been conducted to understand salt stress at the genomic, transcriptomic and proteomic levels, few studies have focused on the translatomic responses to this stress. Recent studies have suggested that transcriptional and translational responses to salt stress can often operate independently. Results We sequenced RNA and ribosome-protected fragments (RPFs) from the salt-sensitive rice (O. sativa L.) cultivar ‘Nipponbare’ (NB) and the salt-tolerant cultivar ‘Sea Rice 86’ (SR86) under normal and salt stress conditions. A large discordance between salt-induced transcriptomic and translatomic alterations was found in both cultivars, with more translationally regulated genes being observed in SR86 in comparison to NB. A biased ribosome occupancy, wherein RPF depth gradually increased from the 5′ ends to the 3′ ends of coding regions, was revealed in NB and SR86. This pattern was strengthened by salt stress, particularly in SR86. On the contrary, the strength of ribosome stalling was accelerated in salt-stressed NB but decreased in SR86. Conclusions This study revealed that translational reprogramming represents an important layer of salt stress responses in rice, and the salt-tolerant cultivar SR86 adopts a more flexible translationally adaptive strategy to cope with salt stress compared to the salt susceptible cultivar NB. The differences in translational dynamics between NB and SR86 may derive from their differing levels of ribosome stalling under salt stress.

scholarly journals Antioxidative and Metabolic Contribution to Salinity Stress Responses in Two Rapeseed Cultivars during the Early Seedling Stage

Antioxidants ◽  
2021 ◽  
Vol 10 (8) ◽  
pp. 1227
Author(s):  
Ali Mahmoud El-Badri ◽  
Maria Batool ◽  
Ibrahim A. A. Mohamed ◽  
Zongkai Wang ◽  
Ahmed Khatab ◽  
...  
Keyword(s):  
Salt Stress ◽  
Salinity Stress ◽  
Stress Responses ◽  
Antioxidant Activities ◽  
Tricarboxylic Acid Cycle ◽  
Seedling Stage ◽  
Plant Performance ◽  
Salt Tolerant ◽  
Brassica Napus L ◽  
Early Seedling

Measuring metabolite patterns and antioxidant ability is vital to understanding the physiological and molecular responses of plants under salinity. A morphological analysis of five rapeseed cultivars showed that Yangyou 9 and Zhongshuang 11 were the most salt-tolerant and -sensitive, respectively. In Yangyou 9, the reactive oxygen species (ROS) level and malondialdehyde (MDA) content were minimized by the activation of antioxidant enzymes such as superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX) for scavenging of over-accumulated ROS under salinity stress. Furthermore, Yangyou 9 showed a significantly higher positive correlation with photosynthetic pigments, osmolyte accumulation, and an adjusted Na+/K+ ratio to improve salt tolerance compared to Zhongshuang 11. Out of 332 compounds identified in the metabolic profile, 225 metabolites were filtrated according to p < 0.05, and 47 metabolites responded to salt stress within tolerant and sensitive cultivars during the studied time, whereas 16 and 9 metabolic compounds accumulated during 12 and 24 h, respectively, in Yangyou 9 after being sown in salt treatment, including fatty acids, amino acids, and flavonoids. These metabolites are relevant to metabolic pathways (amino acid, sucrose, flavonoid metabolism, and tricarboxylic acid cycle (TCA), which accumulated as a response to salinity stress. Thus, Yangyou 9, as a tolerant cultivar, showed improved antioxidant enzyme activity and higher metabolite accumulation, which enhances its tolerance against salinity. This work aids in elucidating the essential cellular metabolic changes in response to salt stress in rapeseed cultivars during seed germination. Meanwhile, the identified metabolites can act as biomarkers to characterize plant performance in breeding programs under salt stress. This comprehensive study of the metabolomics and antioxidant activities of Brassica napus L. during the early seedling stage is of great reference value for plant breeders to develop salt-tolerant rapeseed cultivars.

scholarly journals Advances and Challenges in the Breeding of Salt-Tolerant Rice

2020 ◽  
Vol 21 (21) ◽  
pp. 8385
Author(s):  
Hua Qin ◽  
Yuxiang Li ◽  
Rongfeng Huang
Keyword(s):  
Food Security ◽  
Salt Tolerance ◽  
Quantitative Trait ◽  
Molecular Mechanisms ◽  
Soil Salinization ◽  
Ecological Environment ◽  
Salt Tolerant ◽  
Salt Stress Tolerance ◽  
Rice Varieties ◽  
Salt Susceptible

Soil salinization and a degraded ecological environment are challenging agricultural productivity and food security. Rice (Oryza sativa), the staple food of much of the world’s population, is categorized as a salt-susceptible crop. Improving the salt tolerance of rice would increase the potential of saline-alkali land and ensure food security. Salt tolerance is a complex quantitative trait. Biotechnological efforts to improve the salt tolerance of rice hinge on a detailed understanding of the molecular mechanisms underlying salt stress tolerance. In this review, we summarize progress in the breeding of salt-tolerant rice and in the mapping and cloning of genes and quantitative trait loci (QTLs) associated with salt tolerance in rice. Furthermore, we describe biotechnological tools that can be used to cultivate salt-tolerant rice, providing a reference for efforts aimed at rapidly and precisely cultivating salt-tolerance rice varieties.

Improving salt stress responses of the symbiosis in alfalfa using salt-tolerant cultivar and rhizobial strain

2015 ◽  
Vol 87 ◽  
pp. 108-117 ◽  
Author(s):  
Annick Bertrand ◽  
Catherine Dhont ◽  
Marie Bipfubusa ◽  
François-P. Chalifour ◽  
Pascal Drouin ◽  
...  
Keyword(s):  
Salt Stress ◽  
Stress Responses ◽  
Rhizobial Strain ◽  
Salt Tolerant

scholarly journals Comparison between the Transcriptomes of ‘KDML105’ Rice and a Salt-Tolerant Chromosome Segment Substitution Line

Genes ◽  
2019 ◽  
Vol 10 (10) ◽  
pp. 742
Author(s):  
Nopphawitchayaphong Khrueasan ◽  
Panita Chutimanukul ◽  
Kitiporn Plaimas ◽  
Teerapong Buaboocha ◽  
Meechai Siangliw ◽  
...  
Keyword(s):  
Salt Stress ◽  
Salt Tolerance ◽  
Stress Responses ◽  
Pyruvate Dehydrogenase ◽  
Rice Genome ◽  
Pyruvate Dehydrogenase Kinase ◽  
Chromosome 1 ◽  
Salt Tolerant ◽  
Substitution Lines ◽  
Salt Stress Response

‘KDML105’ rice, known as jasmine rice, is grown in northeast Thailand. The soil there has high salinity, which leads to low productivity. Chromosome substitution lines (CSSLs) with the ‘KDML105’ rice genetic background were evaluated for salt tolerance. CSSL18 showed the highest salt tolerance among the four lines tested. Based on a comparison between the CSSL18 and ‘KDML105’ transcriptomes, more than 27,000 genes were mapped onto the rice genome. Gene ontology enrichment of the significantly differentially expressed genes (DEGs) revealed that different mechanisms were involved in the salt stress responses between these lines. Biological process and molecular function enrichment analysis of the DEGs from both lines revealed differences in the two-component signal transduction system, involving LOC_Os04g23890, which encodes phototropin 2 (PHOT2), and LOC_Os07g44330, which encodes pyruvate dehydrogenase kinase (PDK), the enzyme that inhibits pyruvate dehydrogenase in respiration. OsPHOT2 expression was maintained in CSSL18 under salt stress, whereas it was significantly decreased in ‘KDML105’, suggesting OsPHOT2 signaling may be involved in salt tolerance in CSSL18. PDK expression was induced only in ‘KDML105’. These results suggested respiration was more inhibited in ‘KDML105’ than in CSSL18, and this may contribute to the higher salt susceptibility of ‘KDML105’ rice. Moreover, the DEGs between ‘KDML105’ and CSSL18 revealed the enrichment in transcription factors and signaling proteins located on salt-tolerant quantitative trait loci (QTLs) on chromosome 1. Two of them, OsIRO2 and OsMSR2, showed the potential to be involved in salt stress response, especially, OsMSR2, whose orthologous genes in Arabidopsis had the potential role in photosynthesis adaptation under salt stress.

scholarly journals Change in Chlorophyll Content Over Time Well-differentiated Salt-tolerant, Moderately Salt-tolerant, and Salt-susceptible Cowpea Genotypes

HortScience ◽  
2019 ◽  
Vol 54 (9) ◽  
pp. 1477-1484
Author(s):  
Lingdi Dong ◽  
Waltram Ravelombola ◽  
Yuejin Weng ◽  
Jun Qin ◽  
Wei Zhou ◽  
...  
Keyword(s):  
Salt Stress ◽  
Chlorophyll Content ◽  
Salt Tolerant ◽  
Breeding Programs ◽  
Randomized Design ◽  
Genotype Interaction ◽  
Main Plot ◽  
Salt Susceptible ◽  
Well Differentiated ◽  
Over Time

Previous investigations showed that accumulations of Na+ and Cl− in leaves resulted in reductions in chlorophyll content, thereby affecting photosynthesis. Understanding how chlorophyll content evolves over time will help plant breeders to select cowpea genotypes with better tolerance to salinity by allowing them to choose those with more stable chlorophyll content under salt stress. The objective of this study was to assess how the chlorophyll content of cowpea genotypes changed over the course of 24 d of salt stress at the seedling stage. A total of 24 cowpea genotypes with different salt responses were used in this study. The experiment used a split-plot design with salt treatment as the main plot and cowpea genotypes as the subplot. In the main plot, there were two salt treatments: 0 mm (ionized water) and 200 mm NaCl. In the subplot, the cowpea genotypes were arranged as a completely randomized design with three replicates per genotype. The results revealed that: a1) the time × genotype interaction was significant under conditions with and without salt; 2) chlorophyll content slowly decreased in the salt-tolerant genotypes; 3) chlorophyll content slightly increased on day 6 and day 9 of salt stress in both moderate and sensitive genotypes, but it decreased at a faster rate than in the salt-tolerant genotypes; and 4) salt-sensitive genotypes were completely dead on day 24 of salt stress, whereas the salt-tolerant genotypes were able to maintain a significant amount of chlorophyll content. These results can be used to advance breeding programs for salt tolerance in cowpea.

scholarly journals Comparative Water Relations of Two Contrasting Date Palm Genotypes under Salinity

2019 ◽  
Vol 2019 ◽  
pp. 1-16 ◽  
Author(s):  
Latifa Al Kharusi ◽  
Ramanjulu Sunkar ◽  
Rashid Al-Yahyai ◽  
Mahmoud W. Yaish
Keyword(s):  
Salt Tolerance ◽  
Water Relations ◽  
Stress Responses ◽  
Date Palm ◽  
Crop Yields ◽  
Soluble Sugars ◽  
Salt Tolerant ◽  
Relative Water ◽  
Salt Susceptible ◽  
Casparian Strips

Salinity is a global agricultural problem, resulting in a significant reduction in the plantation areas and the crop yields, especially in arid and semiarid regions. The date palm is relatively salt-tolerant plant species, although the nature of salt tolerance is poorly understood. In this study, the salt stress responses of a salt-tolerant “Umsila” was compared with salt-susceptible “Zabad” date palm cultivars. Various physiological parameters, plant-water relations, and anatomical characteristics were analyzed. The results revealed that although salinity has negatively affected both cultivars, Umsila exhibited more stable photosynthesis than Zabad as reflected by the quantum yield (Qy) and the stomatal conductance (GS). Similarly, Umsila showed a more dynamic root system and efficient water relations than Zabad as demonstrated by the leaf water potential (LWP) and relative water content (RWC) during salinity. Umsila also accumulated greater abundances of soluble sugars, potassium (K+), calcium (Ca+2), proline, glycine betaine, and lignin and formed extra layers of Casparian strips in the root tissues when the seedlings were grown under saline conditions. Together, the results obtained from this study have offered some insights into the salt tolerance mechanisms in the date palm.

Hormonal dynamics during salt stress responses of salt-sensitive Arabidopsis thaliana and salt-tolerant Thellungiella salsuginea

Plant Science ◽  
2017 ◽  
Vol 264 ◽  
pp. 188-198 ◽  
Author(s):  
Sylva Prerostova ◽  
Petre I. Dobrev ◽  
Alena Gaudinova ◽  
Petr Hosek ◽  
Petr Soudek ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Salt Stress ◽  
Stress Responses ◽  
Salt Tolerant ◽  
Thellungiella Salsuginea

scholarly journals Physiological and transcriptomic analyses reveal the mechanisms underlying the salt tolerance of Zoysia japonica Steud.

2019 ◽  
Author(s):  
Jingjing Wang ◽  
Cong An ◽  
Hailin Guo ◽  
Xiangyang Yang ◽  
Jingbo Chen ◽  
...  
Keyword(s):  
Salt Stress ◽  
Stress Response ◽  
Salt Tolerance ◽  
Molecular Mechanisms ◽  
Soil Salinization ◽  
Salt Tolerant ◽  
Zoysia Japonica ◽  
Salt Stress Response ◽  
Leaves And Roots ◽  
Time Point

Abstract Soil salinization areas are sparsely populated and have fragile ecosystems, which seriously restricts the sustainable development of local economies. Zoysia grasses are recognized as excellent warm-season turfgrasses worldwide, with high salt tolerance and superior growth in saline-alkali soil. However, the mechanism underlying the salt tolerance of Zoysia remains unknown. In our study, we investigated the phenotypic and physiological responses of two contrasting materials, Zoysia japonica Steud. Z004 (salt sensitive) and Z011 (salt tolerant), to salt stress. The results showed that Z011 exhibited stronger salt tolerance than Z004, with a higher K + /Na + ratio in both its leaves and roots. To further study the molecular mechanisms underlying salt tolerance, we compared the transcriptomes of the two materials at different time points (0 h, 1 h, 24 h, and 72 h) and from different tissues (leaves and roots) under salt treatment. The 24-h time point and roots were identified as the significant time point and tissue. According to the GO and KEGG analyses of different comparisons, the key DEGs participating in the salt-stress response were selected and belonged to the hormone pathway, TF families and the DUF family. The interaction between the key DEGs was discussed, revealing that auxin signal transduction and TF families may cooperate in Zoysia salt tolerance and that the WRKY family may be the most important TF family. Thus, our research provides fundamental information regarding the salt-stress response in Zoysia and enhances the understanding of molecular mechanisms in salt-tolerant plants.

scholarly journals Stomatal and Metabolic Limitations to Photosynthesis Resulting from NaCl Stress in Perennial Ryegrass Genotypes Differing in Salt Tolerance

2013 ◽  
Vol 138 (5) ◽  
pp. 350-357 ◽  
Author(s):  
Tao Hu ◽  
Haiying Yi ◽  
Longxing Hu ◽  
Jinmin Fu
Keyword(s):  
Salt Stress ◽  
Salt Tolerance ◽  
Perennial Ryegrass ◽  
Stress Responses ◽  
Large Subunit ◽  
Nacl Stress ◽  
Expression Level ◽  
Transcriptional Level ◽  
Salt Tolerant ◽  
Rubisco Activity

Plants possess abiotic stress responses that alter photosynthetic metabolism under salinity stress. The objective of this study was to identify the stomatal and metabolic changes associated with photosynthetic responses to NaCl stress in perennial ryegrass (Lolium perenne). Five-week-old seedlings of two perennial ryegrass genotypes, PI 516605 (salt-sensitive) and BARLP 4317 (salt-tolerant), were subjected to 0 and 250 mm NaCl for 8 days. The salt tolerance in perennial ryegrass was significantly associated with leaf relative water content (RWC) and photosynthetic capacity through the maintenance of greater metabolic activities under prolonged salt stress. BARLP 4317 maintained greater turf quality, RWC, and stomatal limitations but a lower level of lipid peroxidation [malondialdehyde (MDA)] and intercellular CO2 concentration than PI 516605 at 8 days after treatment (DAT). Ribulose-1, 5-bisphosphate carboxylase:oxygenase (Rubisco) activity and activation state, transcriptional level of rbcL gene, and expression level of Rubisco large subunit (LSU) declined in stressed perennial ryegrass but were higher in salt-tolerant genotype at 8 DAT. Furthermore, photosynthetic rate increased linearly with increasing Rubisco activity, Rubisco activation state, and RWC in both genotypes. The same linear relationship was found between RWC and Rubisco activity. However, MDA content decreased linearly with increasing RWC in both genotypes. Salinity-induced inhibition of photosynthesis in perennial ryegrass was mainly the result of stomatal limitation during early salt stress and metabolic limitation associated with the inhibition of RWC, activity of Rubisco, expression level of rbcL gene, and LSU under a prolonged period of severe salinity.

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