scholarly journals Salt-induced expression of intracellular vesicle trafficking genes, CaRab-GTP, and their association with Na+ accumulation in leaves of chickpea (Cicer arietinum L.)

2020 ◽  
Vol 20 (S1) ◽  
Author(s):  
Crystal Sweetman ◽  
Gulmira Khassanova ◽  
Troy K. Miller ◽  
Nicholas J. Booth ◽  
Akhylbek Kurishbayev ◽  
...  
Keyword(s):  
Salinity Stress ◽  
Salinity Tolerance ◽  
Plant Biomass ◽  
Vesicle Trafficking ◽  
Expression Profiles ◽  
Large Family ◽  
Amplification Efficiency ◽  
Strong Positive Correlation ◽  
Degenerate Primers ◽  
Intracellular Vesicle

Abstract Background Chickpea is an important legume and is moderately tolerant to salinity stress during the growing season. However, the level and mechanisms for salinity tolerance can vary among accessions and cultivars. A large family of CaRab-GTP genes, previously identified in chickpea, is homologous to intracellular vesicle trafficking superfamily genes that play essential roles in response to salinity stress in plants. Results To determine which of the gene family members are involved in the chickpea salt response, plants from six selected chickpea accessions (Genesis 836, Hattrick, ICC12726, Rupali, Slasher and Yubileiny) were exposed to salinity stress and expression profiles resolved for the major CaRab-GTP gene clades after 5, 9 and 15 days of salt exposure. Gene clade expression profiles (using degenerate primers targeting all members of each clade) were tested for their relationship to salinity tolerance measures, namely plant biomass and Na+ accumulation. Transcripts representing 11 out of the 13 CaRab clades could be detected by RT-PCR, but only six (CaRabA2, −B, −C, −D, −E and −H) could be quantified using qRT-PCR due to low expression levels or poor amplification efficiency of the degenerate primers for clades containing several gene members. Expression profiles of three gene clades, CaRabB, −D and −E, were very similar across all six chickpea accessions, showing a strongly coordinated network. Salt-induced enhancement of CaRabA2 expression at 15 days showed a very strong positive correlation (R2 = 0.905) with Na+ accumulation in leaves. However, salinity tolerance estimated as relative plant biomass production compared to controls, did not correlate with Na+ accumulation in leaves, nor with expression profiles of any of the investigated CaRab-GTP genes. Conclusion A coordinated network of CaRab-GTP genes, which are likely involved in intracellular trafficking, are important for the salinity stress response of chickpea plants.

The expansin EXP1 gene in the elongation zone is induced during soybean embryonic axis germination and differentially expressed in response to ABA and PEG treatments

2020 ◽  
pp. 1-9
Author(s):  
Nidia H. Montechiarini ◽  
Luciana Delgado ◽  
Eligio N. Morandi ◽  
Néstor J. Carrillo ◽  
Carlos O. Gosparini
Keyword(s):  
Cell Wall ◽  
Seed Germination ◽  
Water Availability ◽  
Expression Profiles ◽  
Soybean Seed ◽  
Embryonic Axis ◽  
Growth Potential ◽  
Elongation Zone ◽  
Degenerate Primers ◽  
Embryonic Axes

Abstract During soybean seed germination, the expansive growth potential of the embryonic axes is driven by water uptake while cell wall loosening occurs in cells from the elongation zone (EZ). Expansins are regarded as primary promoters of cell wall remodelling in all plant expansion processes, with the expression profiles of the soybean expansins supporting their cell or tissue specificity. Therefore, we used embryonic axes isolated from whole seed and focused on the EZ to study seed germination. Using a suite of degenerate primers, we amplified an abundantly expressed expansin gene at the EZ during soybean embryonic axis germination, which was identified as EXP1 by in silico analyses. Expression studies showed that EXP1 was induced under germination conditions in distilled water and down-regulated by abscisic acid (ABA), which inhibits soybean germination by physiologically restraining expansion. Moreover, we also identified a time window of ABA responsiveness within the first 6 h of incubation in water, after which ABA lost control of both EXP1 expression and embryonic axis germination, thus confirming the early role of EXP1 in the EZ during this process. By contrast, EXP1 levels in the EZ increased even when germination was impaired by osmotically limiting the water availability required to develop the embryonic axes’ growth potential. We propose that these higher EXP1 levels are involved in the fast germination of soybean embryonic axes as soon as water availability is re-established. Taken together, our results show strong EXP1 expression in the EZ and postulate EXP1 as a target candidate for soybean seed germination control.

scholarly journals Analysis of RNA Expression Profiles Identifies Dysregulated Vesicle Trafficking Pathways in Creutzfeldt-Jakob Disease

2018 ◽  
Vol 56 (7) ◽  
pp. 5009-5024 ◽  
Author(s):  
Anna Bartoletti-Stella ◽  
Patrizia Corrado ◽  
Nicola Mometto ◽  
Simone Baiardi ◽  
Pascal F. Durrenberger ◽  
...  
Keyword(s):  
Vesicle Trafficking ◽  
Expression Profiles ◽  
Rna Expression ◽  
Jakob Disease

Zoledronate modulates intracellular vesicle trafficking in mast cells via disturbing the interaction of myosinVa/Rab3a and sytaxin4/VAMP7

2018 ◽  
Vol 151 ◽  
pp. 18-25 ◽  
Author(s):  
Shuang Liu ◽  
Muhammad N.A. Sahid ◽  
Erika Takemasa ◽  
Kazutaka Maeyama ◽  
Masaki Mogi
Keyword(s):  
Mast Cells ◽  
Vesicle Trafficking ◽  
Intracellular Vesicle

scholarly journals The Tolerance of Salinity in Rice Requires the Presence of a Functional Copy of FLN2

Biomolecules ◽  
2019 ◽  
Vol 10 (1) ◽  
pp. 17 ◽  
Author(s):  
Guang Chen ◽  
Jiang Hu ◽  
Liuliu Dong ◽  
Dali Zeng ◽  
Longbiao Guo ◽  
...  
Keyword(s):  
Salinity Stress ◽  
Salinity Tolerance ◽  
Sugar Metabolism ◽  
Invertase Activity ◽  
Leaf Sheath ◽  
Japonica Rice ◽  
Wild Type ◽  
Bisphosphate Carboxylase ◽  
Genes Encoding ◽  
Knockout Line

A panel of ethane-methyl-sulfonate-mutagenized japonica rice lines was grown in the presence of salinity in order to identify genes required for the expression of salinity tolerance. A highly nontolerant selection proved to harbor a mutation in FLN2, a gene which encodes fructokinase-like protein2. Exposure of wild-type rice to salinity up-regulated FLN2, while a CRISPR/Cas9-generated FLN2 knockout line was hypersensitive to the stress. Both ribulose 1,5-bisphosphate carboxylase/oxygenase activity and the abundance of the transcript generated by a number of genes encoding components of sucrose synthesis were lower in the knockout line than in wild-type plants’ leaves, while the sucrose contents of the leaf and root were, respectively, markedly increased and decreased. That sugar partitioning to the roots was impaired in FLN2 knockout plants was confirmed by the observation that several genes involved in carbon transport were down-regulated in both the leaf and in the leaf sheath. The levels of sucrose synthase, acid invertase, and neutral invertase activity were distinctly lower in the knockout plants’ roots than in those of wild-type plants, particularly when the plants were exposed to salinity stress. The compromised salinity tolerance exhibited by the FLN2 knockout plants was likely a consequence of an inadequate supply of the assimilate required to support growth, a problem which was rectifiable by providing an exogenous supply of sucrose. The conclusion was that FLN2, on account of its influence over sugar metabolism, is important in the context of seedling growth and the rice plant’s response to salinity stress.

scholarly journals Cloning and evaluation of reference genes for quantitative real-time PCR analysis inAmorphophallus

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3260 ◽  
Author(s):  
Kai Wang ◽  
Yi Niu ◽  
Qijun Wang ◽  
Haili Liu ◽  
Yi Jin ◽  
...  
Keyword(s):  
Gene Expression ◽  
Heat Stress ◽  
Real Time ◽  
Reference Genes ◽  
Dynamic Range ◽  
Expression Profiles ◽  
Mrna Levels ◽  
Expression Stability ◽  
Degenerate Primers ◽  
Different Tissues

Quantitative real-time reverse transcription PCR (RT-qPCR) has been widely used in the detection and quantification of gene expression levels because of its high accuracy, sensitivity, and reproducibility as well as its large dynamic range. However, the reliability and accuracy of RT-qPCR depends on accurate transcript normalization using stably expressed reference genes.Amorphophallusis a perennial plant with a high content of konjac glucomannan (KGM) in its corm. This crop has been used as a food source and as a traditional medicine for thousands of years. Without adequate knowledge of gene expression profiles, there has been no report of validated reference genes inAmorphophallus. In this study, nine genes that are usually used as reference genes in other crops were selected as candidate reference genes. These putative sequences of these genesAmorphophalluswere cloned by the use of degenerate primers. The expression stability of each gene was assessed in different tissues and under two abiotic stresses (heat and waterlogging) inA. albusandA. konjac. Three distinct algorithms were used to evaluate the expression stability of the candidate reference genes. The results demonstrated thatEF1-a,EIF4A,H3andUBQwere the best reference genes under heat stress inAmorphophallus. Furthermore,EF1-a,EIF4A,TUB, andRPwere the best reference genes in waterlogged conditions. By comparing different tissues from all samples, we determined thatEF1-α,EIF4A,andCYPwere stable in these sets. In addition, the suitability of these reference genes was confirmed by validating the expression of a gene encoding the small heat shock proteinSHSP, which is related to heat stress inAmorphophallus. In sum,EF1-αandEIF4Awere the two best reference genes for normalizing mRNA levels in different tissues and under various stress treatments, and we suggest using one of these genes in combination with 1 or 2 reference genes associated with different biological processes to normalize gene expression. Our results will provide researchers with appropriate reference genes for further gene expression quantification using RT-qPCR inAmorphophallus.

scholarly journals tasiRNA-ARF Pathway Moderates Floral Architecture inArabidopsisPlants Subjected to Drought Stress

2014 ◽  
Vol 2014 ◽  
pp. 1-10 ◽  
Author(s):  
Akihiro Matsui ◽  
Kayoko Mizunashi ◽  
Maho Tanaka ◽  
Eli Kaminuma ◽  
Anh Hai Nguyen ◽  
...  
Keyword(s):  
Drought Stress ◽  
Salinity Stress ◽  
Floral Development ◽  
High Salinity ◽  
Expression Profiles ◽  
Fine Tuning ◽  
Wild Type ◽  
Auxin Response ◽  
Sequencing Technology ◽  
High Salinity Stress

In plants, miRNAs and siRNAs, such as transacting siRNAs (ta-siRNAs), affect their targets through distinct regulatory mechanisms. In this study, the expression profiles of small RNAs (smRNAs) inArabidopsisplants subjected to drought, cold, and high-salinity stress were analyzed using 454 DNA sequencing technology. Expression of three groups of ta-siRNAs (TAS1, TAS2, and TAS3) and their precursors was downregulated inArabidopsisplants subjected to drought and high-salinity stress. Analysis of ta-siRNA synthesis mutants and mutatedARF3-overexpressing plants that escape the tasiRNA-ARF target indicated that self-pollination was hampered by short stamens in plants under drought and high-salinity stress. Microarray analysis of flower buds ofrdr6and wild-type plants under drought stress and nonstressed conditions revealed that expression of floral development- and auxin response-related genes was affected by drought stress and by theRDR6mutation. The overall results of the present study indicated that tasiRNA-ARF is involved in maintaining the normal morphogenesis of flowers in plants under stress conditions through fine-tuning expression changes of floral development-related and auxin response-related genes.

Recent Breakthroughs in Neurotransmitter Release: Paradigm for Regulated Exocytosis?

Physiology ◽  
1995 ◽  
Vol 10 (1) ◽  
pp. 42-46
Author(s):  
G Thiel
Keyword(s):  
Synaptic Vesicle ◽  
Brain Function ◽  
Neurotransmitter Release ◽  
Synaptic Vesicles ◽  
Vesicle Trafficking ◽  
Regulated Exocytosis ◽  
Intracellular Vesicle ◽  
Vesicle Cycle ◽  
Synaptic Vesicle Cycle

Synaptic vesicles play a fundamental role in brain function by mediating the release of neurotransmitters. Neurons do not use an entirely unique secretion apparatus but rather a modification of the general secretion machinery. Moreover, the synaptic vesicle cycle has many similarities with intracellular vesicle trafficking pathways.

scholarly journals Screening of jute and kenaf varieties for salinity tolerance

2018 ◽  
Vol 6 (2) ◽  
pp. 214
Author(s):  
Md. Isfatuzzaman Bhuyan ◽  
K M. Mehadi Hassan ◽  
Nowrose Jahan Lipi ◽  
Md Rafiq Uddin ◽  
Md Monirul Islam ◽  
...  
Keyword(s):  
Plant Height ◽  
Salinity Stress ◽  
Salinity Tolerance ◽  
Dry Weight ◽  
Germination Inhibition ◽  
Germination Test ◽  
Salinity Levels ◽  
Total Plant ◽  
Number Of Leaves ◽  
Total Dry Weight

A study was conducted in the Department of Agronomy, Bangladesh Agricultural University (BAU), Mymensingh from April to August 2012 to examine the salinity tolerance of eight jute varieties (CVE-3, C-83, CVL-1, BJC-7370, O-795, O-9897, OM-1, O-72) and two kenaf varieties (HC-95 and HC-2). Initially germination of these varieties were evaluated under six salinity levels viz. 0mM, 20mM, 40mM, 60mM, 80mM, and 100mM NaCl in the seed laboratory of the Department of Agronomy. Afterwards, all the varieties was grown in pots in the net house under four salinity levels viz. 0mM, 25mM, 50mM, and 75mM. The results from the germination study revealed that under control condition (0mM NaCl) all the jute varieties showed germination more than 80% both at 7 and at 14 days after seed sowing, whereas kenaf varieties had germination a little less than 80%. Among the jute varieties, O-72 showed the highest germination (92%), which was statistically similar with those of OM-1(91%), O-795 (90%), and C-83(87%). Salinity stress decreased germination drastically in all of the jute and kenaf varieties. A salinity level of 100mM caused the highest germination inhibition (74.70%) in jute variety CVL-1, which was very close to those of BJC-7370 and O-72. On the other hand, the lowest germination inhibition (51.11%) was recorded in jute variety O-795. The results of the pot trail showed that the plant characters of jute and kenaf varieties were affected significantly by salinity stress. All the varieties produced their respective plant height, number of leaves per plant, and plant dry weight under control condition (no salinity). Among these varieties, CVE-3 produced the highest plant height (145.2cm), and total dry weight (22.55g), whereas O-72 produced the highest number of leaves per plant (24.67). All these plant characters decreased sharply due to salinity stress irrespective of variety. However, the rate of decrease of plant characters occurred differentially in the jute and kenaf varieties. The highest rate of decrease in number of leaves (74.22%) was found from the variety CVE-3, whereas the lowest one was recorded from the variety HC-2 (51.68%). Salinity stress caused the highest decrease in total plant dry weight (73.68%) in the variety CVL-1 and plant height (73.64%) also in the variety CVL-1. On the contrary, the lowest decrease in plant dry weight (50.99%) was found in the variety O-9897 and plant height also in variety O-9897 (50.88%). Based on the results from germination test and pot trail, it can be inferred that jute variety O-9897 appeared to be the most salt tolerant followed by O-795, HC-2, HC-95, CVE-3, O-72, C-83, BJC-7370, OM-1, and CVL-1.    

scholarly journals Expression profiles of protein tyrosine kinase genes in human embryonic stem cells

Reproduction ◽  
2008 ◽  
Vol 136 (4) ◽  
pp. 423-432 ◽  
Author(s):  
Mi-Young Son ◽  
Janghwan Kim ◽  
Hyo-Won Han ◽  
Sun-Mi Woo ◽  
Yee Sook Cho ◽  
...  
Keyword(s):  
Stem Cells ◽  
Embryonic Stem Cells ◽  
Signaling Pathways ◽  
Human Embryonic Stem Cells ◽  
Tyrosine Kinases ◽  
Expression Profiles ◽  
Embryonic Stem ◽  
Degenerate Primers ◽  
Protein Tyrosine ◽  
Hesc Lines

Complex signaling pathways operate in human embryonic stem cells (hESCs) and are coordinated to maintain self-renewal and stem cell characteristics in them. Protein tyrosine kinases (PTKs) participate in diverse signaling pathways in various types of cells. Because of their functions as key molecules in various cellular processes, PTKs are anticipated to have important roles also in hESCs. In this study, we investigated the roles of PTKs in undifferentiated and differentiated hESCs. To establish comprehensive PTK expression profiles in hESCs, we performed reverse transcriptase PCR using degenerate primers according to the conserved catalytic PTK motifs in both undifferentiated and differentiated hESCs. Here, we identified 42 different kinases in two hESC lines, including 5 non-receptor tyrosine kinases (RTKs), 24 RTKs, and 13 dual and other kinases, and compared the protein kinase expression profiles of hESCs and retinoic acid-treated hESCs. Significantly, up- and downregulated kinases in undifferentiated hESCs were confirmed by real-time PCR and western blotting. MAP3K3, ERBB2, FGFR4, and EPHB2 were predominantly upregulated, while CSF1R, TYRO3, SRC, and GSK3A were consistently downregulated in two hESC lines. Western blot analysis showed that the transcriptional levels of these kinases were consistent with the translational levels. The obstruction of upregulated kinases’ activities using specific inhibitors disturbed the undifferentiated status and induced the differentiation of hESCs. Our results support the dynamic expression of PTKs during hESC maintenance and suggest that specific PTKs that are consistently up- and downregulated play important roles in the maintenance of stemness and the direction of differentiation of hESCs.

Sign in / Sign up

Export Citation Format

Share Document