scholarly journals Integrative Visualization of Temporally Varying Medical Image Patterns

2011 ◽  
Vol 8 (2) ◽  
pp. 75-84
Author(s):  
Jung Soh ◽  
Mei Xiao ◽  
Thao Do ◽  
Oscar Meruvia-Pastor ◽  
Christoph W. Sensen
Keyword(s):  
Spatial Data ◽  
Temporal Integration ◽  
Brain Mri ◽  
3D Models ◽  
Surface Model ◽  
Image Stack ◽  
Disease Patterns ◽  
3D Surface ◽  
Mri Scans ◽  
Multiple Sclerosis Patients

Summary We have developed a tool for the visualization of temporal changes of disease patterns, using stacks of medical images collected in time-series experiments. With this tool, users can generate 3D surface models representing disease patterns and observe changes over time in size, shape, and location of clinically significant image patterns. Statistical measurements of the volume of the observed disease patterns can be performed simultaneously. Spatial data integration occurs through the combination of 2D slices of an image stack into a 3D surface model. Temporal integration occurs through the sequential visualization of the 3D models from different time points. Visual integration enables the tool to show 2D images, 3D models and statistical data simultaneously. As an example, the tool has been used to visualize brain MRI scans of several multiple sclerosis patients. It has been developed in Java™, to ensure portability and platform independence, with a user-friendly interface and can be downloaded free of charge for academic users.

scholarly journals COMPUTER GRAPHICS MEETS IMAGE FUSION: THE POWER OF TEXTURE BAKING TO SIMULTANEOUSLY VISUALISE 3D SURFACE FEATURES AND COLOUR

2017 ◽  
Vol IV-2/W2 ◽  
pp. 295-302 ◽  
Author(s):  
G. J. Verhoeven
Keyword(s):  
Large Scale ◽  
3D Models ◽  
Morphological Features ◽  
Surface Model ◽  
Surface Geometry ◽  
Line Drawings ◽  
3D Surface ◽  
Selling Point ◽  
Additional Memory ◽  
Computing Capacity

Since a few years, structure-from-motion and multi-view stereo pipelines have become omnipresent in the cultural heritage domain. The fact that such Image-Based Modelling (IBM) approaches are capable of providing a photo-realistic texture along the threedimensional (3D) digital surface geometry is often considered a unique selling point, certainly for those cases that aim for a visually pleasing result. However, this texture can very often also obscure the underlying geometrical details of the surface, making it very hard to assess the morphological features of the digitised artefact or scene. Instead of constantly switching between the textured and untextured version of the 3D surface model, this paper presents a new method to generate a morphology-enhanced colour texture for the 3D polymesh. The presented approach tries to overcome this switching between objects visualisations by fusing the original colour texture data with a specific depiction of the surface normals. Whether applied to the original 3D surface model or a lowresolution derivative, this newly generated texture does not solely convey the colours in a proper way but also enhances the smalland large-scale spatial and morphological features that are hard or impossible to perceive in the original textured model. In addition, the technique is very useful for low-end 3D viewers, since no additional memory and computing capacity are needed to convey relief details properly. Apart from simple visualisation purposes, the textured 3D models are now also better suited for on-surface interpretative mapping and the generation of line drawings.

Lesion load quantification on fast-FLAIR, rapid acquisition relaxation-enhanced, and gradient spin echo brain MRI scans from multiple sclerosis patients

1999 ◽  
Vol 17 (8) ◽  
pp. 1105-1110 ◽  
Author(s):  
Marco Rovaris ◽  
Maria A Rocca ◽  
Indra Yousry ◽  
Tarek A Yousry ◽  
Bruno Colombo ◽  
...  
Keyword(s):  
Multiple Sclerosis ◽  
Spin Echo ◽  
Brain Mri ◽  
Lesion Load ◽  
Rapid Acquisition ◽  
Mri Scans ◽  
Multiple Sclerosis Patients

scholarly journals Assessment of Disability Progression Independent of Relapse and Brain MRI Activity in Patients with Multiple Sclerosis in Poland

2021 ◽  
Vol 10 (4) ◽  
pp. 868
Author(s):  
Katarzyna Kapica-Topczewska ◽  
François Collin ◽  
Joanna Tarasiuk ◽  
Agata Czarnowska ◽  
Monika Chorąży ◽  
...  
Keyword(s):  
Multiple Sclerosis ◽  
Brain Activity ◽  
Brain Mri ◽  
Disability Progression ◽  
Program Monitoring ◽  
Therapeutic Program ◽  
Relapsing Remitting ◽  
Second Year ◽  
Multiple Sclerosis Patients ◽  
Relapsing Remitting Multiple Sclerosis

The aim of the study was to verify the association of clinical relapses and brain activity with disability progression in relapsing/remitting multiple sclerosis patients receiving disease-modifying treatments in Poland. Disability progression was defined as relapse-associated worsening (RAW), progression independent of relapse activity (PIRA), and progression independent of relapses and brain MRI Activity (PIRMA). Data from the Therapeutic Program Monitoring System were analyzed. Three panels of patients were identified: R0, no relapse during treatment, and R1 and R2 with the occurrence of relapse during the first and the second year of treatment, respectively. In the R0 panel, we detected 4.6% PIRA patients at 24 months (p < 0.001, 5.0% at 36 months, 5.6% at 48 months, 6.1% at 60 months). When restricting this panel to patients without brain MRI activity, we detected 3.0% PIRMA patients at 12 months, 4.5% at 24 months, and varying from 5.3% to 6.2% between 36 and 60 months of treatment, respectively. In the R1 panel, RAW was detected in 15.6% patients at 12 months and, in the absence of further relapses, 9.7% at 24 months and 6.8% at 36 months of treatment. The R2 group was associated with RAW significantly more frequently at 24 months compared to the R1 at 12 months (20.7%; p < 0.05), but without a statistical difference later on. In our work, we confirmed that disability progression was independent of relapses and brain MRI activity.

scholarly journals 3D-Volume Rendering of the Pelvis with Emphasis on Paraurethral Structures Based on MRI Scans and Comparisons between 3D Slicer and OsiriX®

2021 ◽  
Vol 45 (3) ◽  
Author(s):  
C. M. Durnea ◽  
S. Siddiqi ◽  
D. Nazarian ◽  
G. Munneke ◽  
P. M. Sedgwick ◽  
...  
Keyword(s):  
Image Processing ◽  
Secondary Analysis ◽  
Three Dimensional ◽  
3D Models ◽  
Clinical Role ◽  
Cross Sectional ◽  
3D Slicer ◽  
Mri Scans ◽  
3D Volume ◽  
Good Agreement

AbstractThe feasibility of rendering three dimensional (3D) pelvic models of vaginal, urethral and paraurethral lesions from 2D MRI has been demonstrated previously. To quantitatively compare 3D models using two different image processing applications: 3D Slicer and OsiriX. Secondary analysis and processing of five MRI scan based image sets from female patients aged 29–43 years old with vaginal or paraurethral lesions. Cross sectional image sets were used to create 3D models of the pelvic structures with 3D Slicer and OsiriX image processing applications. The linear dimensions of the models created using the two different methods were compared using Bland-Altman plots. The comparisons demonstrated good agreement between measurements from the two applications. The two data sets obtained from different image processing methods demonstrated good agreement. Both 3D Slicer and OsiriX can be used interchangeably and produce almost similar results. The clinical role of this investigation modality remains to be further evaluated.

Intracranial meningioma in a patient with osteogenesis imperfecta

Open Medicine ◽  
2008 ◽  
Vol 3 (4) ◽  
pp. 517-520
Author(s):  
Parmenion Tsitsopoulos ◽  
Ioannis Anagnostopoulos ◽  
Vasileios Tsitouras ◽  
Ioannis Venizelos ◽  
Philippos Tsitsopoulos
Keyword(s):  
Osteogenesis Imperfecta ◽  
Muscle Power ◽  
Brain Mri ◽  
Intracranial Meningioma ◽  
Type I ◽  
Mri Scans ◽  
Heritable Disorder ◽  
History Of ◽  
One Year ◽  
Gait Disturbances

AbstractOsteogenesis imperfecta (OI) is a heritable disorder characterized mainly by connective tissue manifestations. In dinstinct cases, several neurological features have also been described. A 46-year-old male with a known family history of OI type I presented with progressive gait disturbances and diminished muscle strength. Brain MRI scans revealed an infiltrative intracranial mass occupying both frontoparietal lobes. The patient underwent surgical intervention. The histological diagnosis was an atypical (Grade II) meningioma. The bony parts demonstrated a mixture of osseous defects due to OI and infiltration by the tumor. At one-year follow up the patient′s muscle power partially returned while repeat MRI scans were negative for tumor recurrence.

Unmanned Aerial Vehicle (UAV) time-lapse monitoring of the instability processes affecting Varano Hill: A case study of the ancient Roman site of Villa Arianna

2021 ◽  
Author(s):  
Renato Somma ◽  
Alfredo Trocciola ◽  
Daniele Spizzichino ◽  
Alessandro Fedele ◽  
Gabriele Leoni ◽  
...  
Keyword(s):  
High Resolution ◽  
Spatial Data ◽  
Morphological Evolution ◽  
Archaeological Site ◽  
Pilot Project ◽  
Time Lapse ◽  
3D Models ◽  
Slope Instability ◽  
Test Case ◽  
Slope Instabilities

&lt;p&gt;The archaeological site of Villa Arianna - located on Varano Hill, south of Vesuvius - offer tantalizing information regarding first-century AD resilience to hydrogeological risk. Additionally, the site provides an important test case for mitigation efforts of current and future geo-hazard. Villa Arianna, notable in particular for its wall frescoes, is part of a complex of Roman villas built between 89 BC and AD 79 in the ancient coastal resort area of Stabiae. This villa complex is located on a morphological terrace that separates the ruins from the present-day urban center of Castellammare di Stabia. The Varano hill is formed of alternating pyroclastic deposits, from the Vesuvius Complex, and alluvial sediments, from the Sarno River. The area, in AD 79, was completely covered by PDCs from the Plinian eruption of Vesuvius. Due to the geomorphological structure the slope is prone to slope instability phenomena that are mainly represented by earth and debris flows, usually triggered by heavy rainfall. The susceptibility is worsened by changes in hydraulic and land-use conditions mainly caused by lack of maintenance of mitigation works. Villa Arianna is the subject of a joint pilot project of the INGV-ENEA-ISPRA that includes non-invasive monitoring techniques such as the use of UAVs to study the areas of the slope at higher risk of instability. The project, in particular, seeks to implement innovative mitigation solutions that are non-destructive to the cultural heritage. UAVs represent the fastest way to produce high-resolution 3D models of large sites and allow archaeologists to collect accurate spatial data that can be used for 3D GIS analyses. Through this pilot project, we have used detailed 3D models and high-resolution ortho-images for new analyses and documentation of the site and to map the slope instabilities that threatens the Villa Arianna site. Through multi-temporal analyses of different data acquisitions, we intend to define the detailed morphological evolution of the entire Varano slope. These analyses will allow us to highlight priority areas for future low-impact mitigation interventions.&lt;/p&gt;

scholarly journals Soft Tissue Stability around Single Implants Inserted to Replace Maxillary Lateral Incisors: A 3D Evaluation

2016 ◽  
Vol 2016 ◽  
pp. 1-9 ◽  
Author(s):  
F. G. Mangano ◽  
F. Luongo ◽  
G. Picciocchi ◽  
C. Mortellaro ◽  
K. B. Park ◽  
...  
Keyword(s):  
Soft Tissue ◽  
South Korea ◽  
Soft Tissues ◽  
3D Models ◽  
Lateral Incisor ◽  
Engineering Software ◽  
3D Surface ◽  
Immediate Placement ◽  
Surface Models ◽  
3D Evaluation

Purpose. To evaluate the soft tissue stability around single implants inserted to replace maxillary lateral incisors, using an innovative 3D method.Methods. We have used reverse-engineering software for the superimposition of 3D surface models of the dentogingival structures, obtained from intraoral scans of the same patients taken at the delivery of the final crown (S1) and 2 years later (S2). The assessment of soft tissues changes was performed via calculation of the Euclidean surface distances between the 3D models, after the superimposition of S2 on S1; colour maps were used for quantification of changes.Results. Twenty patients (8 males, 12 females) were selected, 10 with a failing/nonrestorable lateral incisor (testgroup: immediate placement in postextraction socket) and 10 with a missing lateral incisor (controlgroup: conventional placement in healed ridge). Each patient received one immediately loaded implant (Anyridge®, Megagen, Gyeongbuk, South Korea). The superimposition of the 3D surface models taken at different times (S2 over S1) revealed a mean (±SD) reduction of 0.057 mm (±0.025) and 0.037 mm (±0.020) fortestandcontrolpatients, respectively. This difference was not statistically significant (p= 0.069).Conclusions. The superimposition of the 3D surface models revealed an excellent peri-implant soft tissue stability in both groups of patients, with minimal changes registered along time.

scholarly journals UNDERWATER PHOTOGRAMMETRY DIGITAL SURFACE MODEL (DSM) OF THE SUBMERGED SITE OF THE ANCIENT LIGHTHOUSE NEAR QAITBAY FORT IN ALEXANDRIA, EGYPT

2019 ◽  
Vol XLII-2/W10 ◽  
pp. 1-8 ◽  
Author(s):  
M. Abdelaziz ◽  
M. Elsayed
Keyword(s):  
3D Model ◽  
Low Cost ◽  
Data Gathering ◽  
Archaeological Site ◽  
3D Models ◽  
Surface Model ◽  
Digital Surface Model ◽  
Architectural Elements ◽  
3D Photogrammetry ◽  
First Time

<p><strong>Abstract.</strong> Underwater photogrammetry in archaeology in Egypt is a completely new experience applied for the first time on the submerged archaeological site of the lighthouse of Alexandria situated on the eastern extremity of the ancient island of Pharos at the foot of Qaitbay Fort at a depth of 2 to 9 metres. In 2009/2010, the CEAlex launched a 3D photogrammetry data-gathering programme for the virtual reassembly of broken artefacts. In 2013 and the beginning of 2014, with the support of the Honor Frost Foundation, methods were developed and refined to acquire manual photographic data of the entire underwater site of Qaitbay using a DSLR camera, simple and low cost materials to obtain a digital surface model (DSM) of the submerged site of the lighthouse, and also to create 3D models of the objects themselves, such as statues, bases of statues and architectural elements. In this paper we present the methodology used for underwater data acquisition, data processing and modelling in order to generate a DSM of the submerged site of Alexandria’s ancient lighthouse. Until 2016, only about 7200&amp;thinsp;m<sup>2</sup> of the submerged site, which exceeds more than 13000&amp;thinsp;m<sup>2</sup>, was covered. One of our main objectives in this project is to georeference the site since this would allow for a very precise 3D model and for correcting the orientation of the site as regards the real-world space.</p>

scholarly journals Olomouc - Possibilities of Geovisualization of the Historical City

2011 ◽  
Vol 6 ◽  
pp. 267-274
Author(s):  
Stanislav Popelka ◽  
Alžběta Brychtová
Keyword(s):  
Spatial Data ◽  
Large Scale ◽  
18Th Century ◽  
3D Visualization ◽  
3D Models ◽  
Google Earth ◽  
Point Of View ◽  
World Heritage Site ◽  
Historical Maps ◽  
The City

Olomouc, nowadays a city with 100,000 inhabitants, has always been considered as one of the most prominent Czech cities. It is a social and economical centre, which history started just about the 11th century. The present appearance of the city has its roots in the 18th century, when the city was almost razed to the ground after the Thirty years’ war and a great fire in 1709. After that, the city was rebuilt to a baroque military fortress against Prussia army. At the beginning of the 20th century the majority of the fortress was demolished. Character of the town is dominated by the large number of churches, burgher’s houses and other architecturally significant buildings, like a Holy Trinity Column, a UNESCO World Heritage Site. Aim of this project was to state the most suitable methods of visualization of spatial-temporal change in historical build-up area from the tourist’s point of view, and to design and evaluate possibilities of spatial data acquisition. There are many methods of 2D and 3D visualization which are suitable for depiction of historical and contemporary situation. In the article four approaches are discussed comparison of historical and recent pictures or photos, overlaying historical maps over the orthophoto, enhanced visualization of historical map in large scale using the third dimension and photorealistic 3D models of the same area in different ages. All mentioned methods were geolocalizated using the Google Earth environment and multimedia features were added to enhance the impression of perception. Possibilities of visualization, which were outlined above, were realized on a case study of the Olomouc city. As a source of historical data were used rapport plans of the bastion fortress from the 17th century. The accuracy of historical maps was confirmed by cartometric methods with use of the MapAnalyst software. Registration of the spatial-temporal changes information has a great potential in urban planning or realization of reconstruction and particularly in the propagation of the region and increasing the knowledge of citizens about the history of Olomouc.

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