scholarly journals Acoustic communication in the Red-vented Bulbul Pycnonotus cafer

2004 ◽  
Vol 76 (2) ◽  
pp. 350-358 ◽  
Author(s):  
Anil Kumar
Keyword(s):  
Acoustic Communication ◽  
Wide Band ◽  
Predation Pressure ◽  
Alarm Calls ◽  
Type I ◽  
Structural Variations ◽  
Pair Bonds ◽  
Contact Calls ◽  
Pycnonotus Cafer ◽  
Context Specific

This paper deals with acoustic communication in the Red-vented Bulbul Pycnonotus cafer. This species emits a high variety of vocal signals that can be classified on the basis of their acoustical features and context of production. Individuals sang throughout the year and most songs were discrete and stereotyped. The songs were composed of strophes (phrases) with minor structural variations of elements that were preceded and followed by a temporal gap (3 to 12s). Most strophes were composed of 2 to 6 elements that were often dissimilar in structure and ranging from 0.98 to 4.5 kHz. The biological function of the song appeared to be to maintain pair bonds and to synchronize breeding activities. Different types of context-specific calls were identified. Individuals produced Type-I alarm calls (fast and wide-band, 1.03 to 6.36 kHz) under low predation pressure andType-II calls (narrowfrequency range, 1.37 to 3.39 kHz) under high predation pressure. Roosting calls were fast and wide-band signals phonetically similar to Type-I alarm calls. Three types of begging/contact calls were recorded in nestlings/fledglings. Greeting calls and flight calls were composed of complex phrases, like song, but were short and used for proximate functions.

scholarly journals Anti-predator behaviour of Sahamalaza sportive lemurs, Lepilemur sahamalazensis, at diurnal sleeping sites

2013 ◽  
Vol 82 (3) ◽  
pp. 131-S1 ◽  
Author(s):  
Melanie Seiler ◽  
Christoph Schwitzer ◽  
Marc Holderied
Keyword(s):  
Predation Risk ◽  
Group Formation ◽  
Predation Pressure ◽  
Alarm Calls ◽  
Contact Calls ◽  
Terrestrial Predator ◽  
High Predation ◽  
Sleeping Sites ◽  
Sportive Lemur ◽  
Predator Behaviour

In response to predation pressure by raptors, snakes, and carnivores, primates employ anti-predator behaviours such as avoiding areas of high predation risk, cryptic behaviour and camouflage, vigilance and group formation (including mixedspecies associations), and eavesdropping on other species’ alarm calls. After detecting a predator, primates can produce alarm calls, show predator-specific escape strategies or even mob the predator. It remains unclear how solitary nocturnal primates respond to diurnal predation pressure while they sleep or rest. The aim of this study was to investigate the diurnal anti-predator behaviour of the nocturnal and solitary Sahamalaza sportive lemur, Lepilemur sahamalazensis, which regularly rests in exposed locations. We observed the responses of 32 Sahamalaza sportive lemurs to playbacks of territorial calls of an aerial predator (Madagascar harrier hawk), mating calls of a terrestrial predator (fossa), and the contact calls of a medium-sized bird (crested coua) as a control, at different diurnal sleeping sites. Lemurs never showed a flight response after replays of predator or control calls, but regularly froze after harrier hawk calls. Lemurs scanned the sky immediately after playback of harrier hawk calls, and the ground or trees after fossa calls. Lemur vigilance increased significantly after both predator calls. After crested coua calls the animals became significantly less vigilant, suggesting that contact calls of this bird serve as indicators of predator absence. We found no response differences between different types of sleeping sites. Our results show that resting Sahamalaza sportive lemurs recognise predator vocalisations as indicators of increased predation risk, discern vocalizations of different predators, and employ anti-predator behaviours specific for different predator classes. Their behavioural responses while resting or sleeping are comparable to those of active primates, and their response rate of 80% shows that this solitary and nocturnal primate is constantly aware of its environment.

scholarly journals Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE

2021 ◽  
Author(s):  
Oliver M. Crook ◽  
Colin T. R. Davies ◽  
Laurent Gatto ◽  
Paul D.W. Kirk ◽  
Kathryn S. Lilley
Keyword(s):  
Steady State ◽  
High Throughput ◽  
Statistical Power ◽  
Subcellular Localisation ◽  
Type I ◽  
Disease States ◽  
Proteomic Data ◽  
Rational Drug ◽  
Context Specific ◽  
Type Ii Errors

AbstractThe steady-state localisation of proteins provides vital insight into their function. These localisations are context specific with proteins translocating between different sub-cellular niches upon perturbation of the subcellular environment. Differential localisation provides a step towards mechanistic insight of subcellular protein dynamics. Aberrant localisation has been implicated in a number of pathologies, thus differential localisation may help characterise disease states and facilitate rational drug discovery by suggesting novel targets. High-accuracy high-throughput mass spectrometry-based methods now exist to map the steady-state localisation and re-localisation of proteins. Here, we propose a principled Bayesian approach, BANDLE, that uses these data to compute the probability that a protein differentially localises upon cellular perturbation, as well quantifying the uncertainty in these estimates. Furthermore, BANDLE allows information to be shared across spatial proteomics datasets to improve statistical power. Extensive simulation studies demonstrate that BANDLE reduces the number of both type I and type II errors compared to existing approaches. Application of BANDLE to datasets studying EGF stimulation and AP-4 dependent localisation recovers well studied translocations, using only two-thirds of the provided data. Moreover, we implicate TMEM199 with AP-4 dependent localisation. In an application to cytomegalovirus infection, we obtain novel insights into the rewiring of the host proteome. Integration of high-throughput transcriptomic and proteomic data, along with degradation assays, acetylation experiments and a cytomegalovirus interactome allows us to provide the functional context of these data.

scholarly journals Comparative mechanisms of cancer cell migration through 3D matrix and physiological microtracks

2015 ◽  
Vol 308 (6) ◽  
pp. C436-C447 ◽  
Author(s):  
Shawn P. Carey ◽  
Aniqua Rahman ◽  
Casey M. Kraning-Rush ◽  
Bethsabe Romero ◽  
Sahana Somasegar ◽  
...  
Keyword(s):  
Cell Migration ◽  
Cancer Cell ◽  
Actin Polymerization ◽  
Cancer Metastasis ◽  
Type I Collagen ◽  
Type I ◽  
Cancer Cell Migration ◽  
Cytoskeletal Dynamics ◽  
3D Matrix ◽  
Context Specific

Tumor cell invasion through the stromal extracellular matrix (ECM) is a key feature of cancer metastasis, and understanding the cellular mechanisms of invasive migration is critical to the development of effective diagnostic and therapeutic strategies. Since cancer cell migration is highly adaptable to physiochemical properties of the ECM, it is critical to define these migration mechanisms in a context-specific manner. Although extensive work has characterized cancer cell migration in two- and three-dimensional (3D) matrix environments, the migration program employed by cells to move through native and cell-derived microtracks within the stromal ECM remains unclear. We previously reported the development of an in vitro model of patterned type I collagen microtracks that enable matrix metalloproteinase-independent microtrack migration. Here we show that collagen microtracks closely resemble channel-like gaps in native mammary stroma ECM and examine the extracellular and intracellular mechanisms underlying microtrack migration. Cell-matrix mechanocoupling, while critical for migration through 3D matrix, is not necessary for microtrack migration. Instead, cytoskeletal dynamics, including actin polymerization, cortical tension, and microtubule turnover, enable persistent, polarized migration through physiological microtracks. These results indicate that tumor cells employ context-specific mechanisms to migrate and suggest that selective targeting of cytoskeletal dynamics, but not adhesion, proteolysis, or cell traction forces, may effectively inhibit cancer cell migration through preformed matrix microtracks within the tumor stroma.

scholarly journals Suzaku Studies of Wide-Band Spectral Variability of the Bright Type I Seyfert Galaxy Markarian 509

2011 ◽  
Vol 63 (sp3) ◽  
pp. S925-S936 ◽  
Author(s):  
Hirofumi Noda ◽  
Kazuo Makishima ◽  
Shin’ya Yamada ◽  
Shunsuke Torii ◽  
Soki Sakurai ◽  
...  
Keyword(s):  
Seyfert Galaxy ◽  
Wide Band ◽  
Type I ◽  
Spectral Variability

The cessation of contact calls does not provoke or modulate alarm behaviour in a social passerine

Behaviour ◽  
2021 ◽  
pp. 1-20
Author(s):  
Estelle Meaux ◽  
Chao He ◽  
Luying Qin ◽  
Eben Goodale
Keyword(s):  
Social Factors ◽  
Group Living ◽  
Alarm Call ◽  
Alarm Calls ◽  
Playback Experiments ◽  
Contact Call ◽  
Alarm Calling ◽  
Alarm Behaviour ◽  
Contact Calls ◽  
Crucial Information

Abstract Vocalizations that signal predation risk such as alarm calls provide crucial information for the survival of group-living individuals. However, alarm calling may attract the predator’s attention and, to avoid this cost, animals can opt for alternative strategies to indicate danger, such as ‘adaptive silence’, which is the cessation of vocalizations. We investigate here whether abrupt contact call cessation would provoke alarm responses, or would reinforce the signal given by an alarm call. In an aviary setting, we conducted playback experiments with a group-living passerine, the Swinhoe’s white-eye, Zosterops simplex. We found that birds did not respond to a sudden call cessation, nor did they have a stronger response to alarm calls followed by silence than to alarm calls followed by contact calls. Confirming previous work investigating contact call rate, it appears that in this species contact calls encode information about social factors but not environmental conditions.

scholarly journals Complex Disorder in Type-I Clathrates: Synthesis and Structural Characterization of A8GaxSn46−x (A = Rb, Cs; 6.9 < x < 7.5)

Crystals ◽  
2020 ◽  
Vol 10 (4) ◽  
pp. 298
Author(s):  
Sviatoslav A. Baranets ◽  
Amanda B. Childs ◽  
Hua He ◽  
Svilen Bobev
Keyword(s):  
Single Crystal ◽  
Exact Nature ◽  
Type I ◽  
X Ray Diffraction ◽  
Structural Variations ◽  
Zintl Phases ◽  
Experimental Conditions ◽  
Group 13 ◽  
X Ray ◽  
The Matrix

Exploratory studies in the systems Rb–Ga–Sn and Cs–Ga–Sn yielded the cubic type-I clathrates with refined compositions Rb8GaxSn46−x and Cs8GaxSn46−x (6.9 < x < 7.5). Nearly single-phase materials with good crystallinity were obtained from stoichiometric reactions of the elements. The structures were characterized by means of single-crystal X-ray diffraction methods. Both Rb8GaxSn46−x and Cs8GaxSn46−x represents cases, where a Group 13 element randomly substitutes a Group 14 element in the structure. The extent of Ga/Sn mixing is apparently governed by the drive of the system to achieve an optimal valence electron count, and hence, Rb8GaxSn46−x and Cs8GaxSn46−x (x ≈ 8) can be regarded as Zintl phases. This notion is supported by structure refinements on a multitude of single-crystal X-ray diffraction data, which also confirm that both types of cages in the cubic type-I structure are fully occupied by Rb and Cs atoms. The open-framework, comprised of 46 nodes per formula unit, adapts to the incorporation of nearly eight Ga atoms within the matrix of Sn, whereby small, short-range distortions result. The exact nature of these effects is still unclear, as so far, the structural variations could only be modeled as both positional and occupational disorder at one of three framework sites. Since vacancies in the structures of the binary type-I clathrates A8Sn46−x☐x (A = Rb, Cs; ☐ = missing Sn atom) are also known to cause local distortions, the latter were also synthesized with the same protocols used for the synthesis of A8GaxSn46−x and structurally re-analyzed. The results from the latter studies confirm that homogeneity issues abound, and that the final structures/compositions are an intricate function of the experimental conditions.

scholarly journals Direct interaction between Kit and the interleukin-7 receptor

Blood ◽  
2007 ◽  
Vol 110 (6) ◽  
pp. 1840-1847 ◽  
Author(s):  
Thomas Jahn ◽  
Simran Sindhu ◽  
Stacie Gooch ◽  
Petra Seipel ◽  
Philip Lavori ◽  
...  
Keyword(s):  
Tyrosine Phosphorylation ◽  
Direct Interaction ◽  
Underlying Mechanism ◽  
Molecular Data ◽  
Lymphoid Cells ◽  
Type I ◽  
Dependent Manner ◽  
Interleukin 7 ◽  
Context Specific

Abstract In vivo analyses of thymopoiesis in mice defective in signaling through Kit and γc or Kit and IL-7Rα demonstrate synergy and partial complementation of γc or IL-7–mediated signaling by the Kit signaling pathway. Our molecular analysis in T-lymphoid cells as well as in nonhematopoietic cells shows that Kit and IL-7R signaling pathways directly interact. KL-mediated activation of Kit induced strong tyrosine phosphorylation of γc and IL-7Rα in the absence of IL-7. Activated Kit formed a complex with either IL-7Rα or γc, and tyrosine phosphorylation of both subunits occurred independently of Jak3, suggesting that γc and IL-7Rα are each direct substrates of Kit. Kit activated Jak3 in an IL-7R–dependent manner. Moreover, deficient Stat5 activation of the Kit mutant YY567/569FF lacking intrinsic Src activation capacity was partially reconstituted in the presence of IL-7R and Jak3. Based on the molecular data, we propose a model of Kit-mediated functional activation of γc-containing receptors such as IL-7R, similar to the interaction between Kit and Epo-R. Such indirect activation of the Jak-Stat pathway induced by the interaction between an RTK and type I cytokine receptor could be the underlying mechanism for a context-specific signaling repertoire of a pleiotropic RTK-like Kit.

scholarly journals Female putty-nosed monkeys ( Cercopithecus nictitans ) vocally recruit males for predator defence

2021 ◽  
Vol 8 (3) ◽  
Author(s):  
Frederic Gnepa Mehon ◽  
Claudia Stephan
Keyword(s):  
Alarm Call ◽  
Cost Benefit ◽  
Alarm Calls ◽  
Context Specificity ◽  
Sexual Dimorphisms ◽  
Alarm Calling ◽  
Cost Benefit Ratio ◽  
Female Behaviour ◽  
Context Specific ◽  
Predator Defence

Alarm calls can trigger very different behavioural changes in receivers and signallers might apply different alarm call strategies based on their individual cost-benefit ratio. These cost-benefit ratios can also vary as a function of sex. For instance, male but not female forest guenons possess loud alarms that serve warning and predator deterrence functions, but also intergroup spacing and male–male competition. In some forest guenons, the context specificity and alarm call repertoire size additionally differs between females and males but it remains unclear if this corresponds to similar sexual dimorphisms in alarm calling strategies. We here experimentally investigated whether general female and more context-specific male alarm calls in putty-nosed monkeys ( Cercopithecus nictitans ) had different effects on the opposite sex's behaviour and whether they might serve different female and male alarm calling strategies. We presented a leopard model separately to the females or to the male of several groups while ensuring that the opposite sex only heard alarm calls of target individuals. While female alarms led to the recruitment of males in the majority of cases, male alarms did not have a similar effect on female behaviour. Males further seem to vocally advertise their engagement in group defence with more unspecific alarms while approaching their group. Males switched alarm call types once they spotted the leopard model and started mobbing behaviour. Females only ceased to alarm call when males produced calls typically associated with anti-predator defence, but not when males produced unspecific alarm calls. Our results suggest that sexual dimorphisms in the context specificity of alarms most likely correspond to different alarm calling strategies in female and male putty-nosed monkeys.

scholarly journals Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE

2021 ◽  
Author(s):  
Oliver Crook ◽  
Colin Davies ◽  
Laurent Gatto ◽  
Paul Kirk ◽  
Kathryn Lilley
Keyword(s):  
Steady State ◽  
High Throughput ◽  
Statistical Power ◽  
Subcellular Localisation ◽  
Type I ◽  
Disease States ◽  
Proteomic Data ◽  
Rational Drug ◽  
Context Specific ◽  
Type Ii Errors

Abstract The steady-state localisation of proteins provides vital insight into their function. These localisations are context specific with proteins translocating between different sub-cellular niches upon perturbation of the subcellular environment. Differential localisation provides a step towards mechanistic insight of subcellular protein dynamics. Aberrant localisation has been implicated in a number of pathologies, thus differential localisation may help characterise disease states and facilitate rational drug discovery by suggesting novel targets. High-accuracy high-throughput mass spectrometry-based methods now exist to map the steady-state localisation and re-localisation of proteins. Here, we propose a principled Bayesian approach, BANDLE, that uses these data to compute the probability that a protein differentially localises upon cellular perturbation, as well quantifying the uncertainty in these estimates. Furthermore, BANDLE allows information to be shared across spatial proteomics datasets to improve statistical power. Extensive simulation studies demonstrate that BANDLE reduces the number of both type I and type II errors compared to existing approaches. Application of BANDLE to datasets studying EGF stimulation and AP-4 dependent localisation recovers well studied translocations, using only two-thirds of the provided data. Moreover, we implicate TMEM199 with AP-4 dependent localisation. In an application to cytomegalovirus infection, we obtain novel insights into the rewiring of the host proteome. Integration of high-throughput transcriptomic and proteomic data, along with degradation assays, acetylation experiments and a cytomegalovirus interactome allows us to provide the functional context of these data.

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