Prediction of macro- and microelements content in Croatian common bean landraces (Phaseolus vulgaris L.) by NIR spectroscopy

In this study, near-infrared spectroscopy (NIRS) was used to predict the contents of essential macro- and microelements in common bean (Phaseolus vulgaris L.) accessions of most widespread Croatian landraces. Total of 175 samples were used for the model development by modified partial least square (MPLS), principal component regression (PCR) and partial least square (PLS) techniques. Based on the coefﬁcients of determination (R2), standard error of calibration (SEC) and error of prediction (SEP) the models developed were (i) nearly applicable for nitrogen (N) (0.89, 0.12 and 0.45 respectively), (ii) poor for iron (Fe), cinc (Zn), potassium oxide (K2O) and potassium (K), (iii) usable for phosphorus pentoxide (P2O5), phosphorus (P), phytic acid (PA) and manganese (Mn). The MPLS regression statistics suggested the most accurate models developed comparing with PLS and PCR. It was concluded that a wider set of common bean samples needs to be used for macro- and microelements prediction by NIRS.

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A fast and low-cost approach to quality control of alcohol-based hand sanitizer using portable near infrared spectrometer and chemometrics

Journal of Near Infrared Spectroscopy ◽

10.1177/0967033520987315 ◽

2021 ◽

pp. 096703352098731

Author(s):

Adenilton C da Silva ◽

Lívia PD Ribeiro ◽

Ruth MB Vidal ◽

Wladiana O Matos ◽

Gisele S Lopes

Keyword(s):

Quality Control ◽

Discriminant Analysis ◽

Near Infrared ◽

Nir Spectroscopy ◽

Principal Component ◽

Partial Least Square ◽

Least Square ◽

Chemical Components ◽

Linear Discriminant ◽

Hand Sanitizer

The use of alcohol-based hand sanitizers is recommended as one of several strategies to minimize contamination and spread of the COVID-19 disease. Current reports suggest that the virucidal potential of ethanol occurs at concentrations close to 70%. Traditional methods of verifying the ethanol concentration in such products invite potential errors due to the viscosity of chemical components or may be prohibitively expensive to undertake in large demand. Near infrared (NIR) spectroscopy and chemometrics have already been used for the determination of ethanol in other matrices and present an alternative fast and reliable approach to quality control of alcohol-based hand sanitizers. In this study, a portable NIR spectrometer combined with classification chemometric tools, i.e., partial least square discriminant analysis (PLS–DA) and linear discriminant analysis with successive algorithm projection (SPA–LDA) were used to construct models to identify conforming and non-conforming commercial and laboratory synthesized hand sanitizer samples. Principal component analysis (PCA) was applied in an exploratory data study. Three principal components accounted for 99% of data variance and demonstrate clustering of conforming and non-conforming samples. The PLS–DA and SPA–LDA classification models presented 77 and 100% of accuracy in cross/internal validation respectively and 100% of accuracy in the classification of test samples. A total of 43% commercial samples evaluated using the PLS–DA and SPA–LDA presented ethanol content non-conforming for hand sanitizer gel. These results indicate that use of NIR spectroscopy and chemometrics is a promising strategy, yielding a method that is fast, portable, and reliable for discrimination of alcohol-based hand sanitizers with respect to conforming and non-conforming ethanol concentrations.

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Rapid Assessment of Exercise State through Athlete’s Urine Using Temperature-Dependent NIRS Technology

Journal of Analytical Methods in Chemistry ◽

10.1155/2020/8828213 ◽

2020 ◽

Vol 2020 ◽

pp. 1-7

Author(s):

Lihe Ding ◽

Lei-ming Yuan ◽

Yiye Sun ◽

Xia Zhang ◽

Jianpeng Li ◽

...

Keyword(s):

Physical Function ◽

Near Infrared ◽

Rapid Assessment ◽

Nir Spectroscopy ◽

Principal Component ◽

Partial Least Square ◽

Nutritional Supplementation ◽

Least Square ◽

Basketball Player ◽

Temperature Dependent

Athletes usually take nutritional supplements and perform the specialized training to improve the performance of sport. A quick assessment of their athletic status will help to understand the current physical function of athletes’ status and the effect of nutritional supplementation. Human urine, as one of the most important body indicators, is composed of many metabolites, which can provide effective monitoring information for physical conditions. In this study, temperature-dependent near-infrared spectroscopy (NIRS) technology was used to collect the spectra of athlete’s urine for evaluating the feasibility of rapidly detecting the exercise state of the basketball player. To obtain the detection results accurately, several chemometrics methods including principal component analysis (PCA), variables selection method of variable importance in projection (VIP), continuous 1D wavelet transform (CWT), and partial least square-discriminant analysis (PLS-DA) were employed to develop a classifier to distinguish the physical status of athletes. The optimal classifying results were obtained by wavelet-PLS-DA classifier, whose average precision, sensitivity, and specificity are all above 0.95, and the overall accuracy of all samples is 0.97. These results demonstrate that temperature-dependent NIRS can be used to rapidly assess the physical function of athlete’s status and the effect of nutritional supplementation is feasible. It can be believed that temperature-dependent NIR spectroscopy will obtain applications more widely in the future.

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Non-Destructive Quality Measurement for Three Varieties of Tomato Using VIS/NIR Spectroscopy

Sustainability ◽

10.3390/su131910747 ◽

2021 ◽

Vol 13 (19) ◽

pp. 10747

Author(s):

Khadija Najjar ◽

Nawaf Abu-Khalaf

Keyword(s):

Near Infrared ◽

Quality Measurement ◽

Nir Spectroscopy ◽

Principal Component ◽

Titratable Acidity ◽

Quality Parameters ◽

Partial Least Square ◽

Least Square ◽

Soluble Solids ◽

Non Destructive

The non-destructive visible/near-infrared (VIS/NIR) spectroscopy is a promising technique in determining the quality of agricultural commodities. Therefore, this study aimed to examine the ability of VIS/NIR spectroscopy (550–1100 nm) to distinguish between three different varieties of tomato (i.e., Ekram, Harver and Izmer), as well as to predict the quality parameters of tomato, such as soluble solids content (SSC), titratable acidity (TA), taste (SSC/TA) and firmness. Ninety intact samples from three tomato varieties were used. These samples were examined using VIS/NIR spectroscopy and quality parameters were also measured using traditional methods. Principal component analysis (PCA) and partial least square (PLS) were carried out. The results of PCA showed the ability of VIS/NIR spectroscopy to distinguish between the three varieties, where two PCs explained about 99% of the total variance in both calibration and validation sets. Moreover, PLS showed the possibility of modelling quality parameters. The correlation coefficient (R2) and the ratio of performance deviation (RPD) for all quality parameters (except for firmness) were found to be higher than 0.85 and 2.5, respectively. Thus, these results indicate that the VIS/NIR spectroscopy can be used to discriminate between different varieties of tomato and predict their quality parameters.

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Histamine Control in Raw and Processed Tuna: A Rapid Tool Based on NIR Spectroscopy

Foods ◽

10.3390/foods10040885 ◽

2021 ◽

Vol 10 (4) ◽

pp. 885

Author(s):

Sergio Ghidini ◽

Luca Maria Chiesa ◽

Sara Panseri ◽

Maria Olga Varrà ◽

Adriana Ianieri ◽

...

Keyword(s):

Root Mean Square ◽

Near Infrared ◽

Nir Spectroscopy ◽

Partial Least Square ◽

Least Square ◽

Partial Least Square Regression ◽

Coefficient Of Determination ◽

Mean Square ◽

Tuna Fish ◽

Mean Square Errors

The present study was designed to investigate whether near infrared (NIR) spectroscopy with minimal sample processing could be a suitable technique to rapidly measure histamine levels in raw and processed tuna fish. Calibration models based on orthogonal partial least square regression (OPLSR) were built to predict histamine in the range 10–1000 mg kg−1 using the 1000–2500 nm NIR spectra of artificially-contaminated fish. The two models were then validated using a new set of naturally contaminated samples in which histamine content was determined by conventional high-performance liquid chromatography (HPLC) analysis. As for calibration results, coefficient of determination (r2) > 0.98, root mean square of estimation (RMSEE) ≤ 5 mg kg−1 and root mean square of cross-validation (RMSECV) ≤ 6 mg kg−1 were achieved. Both models were optimal also in the validation stage, showing r2 values > 0.97, root mean square errors of prediction (RMSEP) ≤ 10 mg kg−1 and relative range error (RER) ≥ 25, with better results showed by the model for processed fish. The promising results achieved suggest NIR spectroscopy as an implemental analytical solution in fish industries and markets to effectively determine histamine amounts.

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Physicochemical, Interaction & Topological Descriptors vs. hMAO-A Inhibition of Aplysinopsin Analogs: A Boulevard to the Discovery of Semi-Synthetic Anti-Depression Agents

Current Drug Metabolism ◽

10.2174/1389200222666211015155014 ◽

2021 ◽

Vol 22 ◽

Author(s):

Rajeev K. Singla ◽

Ghulam Md Ashraf ◽

Magdah Ganash ◽

Varadaraj Bhat G ◽

Bairong Shen

Keyword(s):

Model Development ◽

Principal Component ◽

Partial Least Square ◽

Least Square ◽

Partial Least Square Regression ◽

Topological Descriptors ◽

Good Prediction ◽

Physicochemical Interaction ◽

Human Beings ◽

2D Qsar

Background: Neurological disorder, depression is the globally 4th leading cause of chronic disabilities in human beings. Objective: This study aimed to model a 2D-QSAR equation that can facilitate the researchers to design better aplysinopsin analogs with potent hMAO-A inhibition. Methods: Aplysinopsin analogs dataset were subjected to ADME assessment for drug-likeness suitability using StarDrop software before modeled equation. 2D-QSAR equations were generated using VLife MDS 4.6. Dataset was segregated into training and test set using different methodologies, followed by variable selection. Model development was done using principal component regression, partial least square regression, and multiple regression. Results: The dataset has successfully qualified the drug-likeness criteria in ADME simulation, with more than 90% of molecules cleared the ideal conditions including intrinsic solubility, hydrophobicity, CYP3A4 2C9pKi, hERG pIC50, etc. 112 models were developed using multiparametric consideration of methodologies. The best six models were discussed with their extent of significance and prediction capabilities. ALP97 was emerged out as the most significant model out of all, with ~83% of the variance in the training set, the internal predictive ability of ~74% while having the external predictive capability of ~79%. Conclusion: ADME assessment suggested that aplysinopsin analogs are worth investigating. Interaction among the descriptors in a way of summation or multiplication products, are quite influential and yielding significant 2D-QSAR models with good prediction efficiency. This model can be used for the design of a more potent hMAO-A inhibitor having an aplysinopsin scaffold, which can then contribute to the treatment of depression and other neurological disorders.

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Authentication of Greek PDO Kalamata Table Olives: A Novel Non-Target High Resolution Mass Spectrometric Approach

Molecules ◽

10.3390/molecules25122919 ◽

2020 ◽

Vol 25 (12) ◽

pp. 2919

Author(s):

Natasa P. Kalogiouri ◽

Reza Aalizadeh ◽

Marilena E. Dasenaki ◽

Nikolaos S. Thomaidis

Keyword(s):

High Performance ◽

Model Development ◽

Principal Component ◽

Partial Least Square ◽

Least Square ◽

Table Olives ◽

Method Performance ◽

Validation Parameters ◽

Targeted Screening ◽

Mass Spectrometric Approach

Food science continually requires the development of novel analytical methods to prevent fraudulent actions and guarantee food authenticity. Greek table olives, one of the most emblematic and valuable Greek national products, are often subjected to economically motivated fraud. In this work, a novel ultra-high-performance liquid chromatography–quadrupole time of flight tandem mass spectrometry (UHPLC-QTOF-MS) analytical method was developed to detect the mislabeling of Greek PDO Kalamata table olives, and thereby establish their authenticity. A non-targeted screening workflow was applied, coupled to advanced chemometric techniques such as Principal Component Analysis (PCA) and Partial Least Square Discriminant Analysis (PLS-DA) in order to fingerprint and accurately discriminate PDO Greek Kalamata olives from Kalamata (or Kalamon) type olives from Egypt and Chile. The method performance was evaluated using a target set of phenolic compounds and several validation parameters were calculated. Overall, 65 table olive samples from Greece, Egypt, and Chile were analyzed and processed for the model development and its accuracy was validated. The robustness of the chemometric model was tested using 11 Greek Kalamon olive samples that were produced during the following crop year, 2018, and they were successfully classified as Greek Kalamon olives from Kalamata. Twenty-six characteristic authenticity markers were indicated to be responsible for the discrimination of Kalamon olives of different geographical origins.

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Determination of Fat, Protein, and Total Solids in Cheese by Near-Infrared Reflectance Spectroscopy

Journal of AOAC International ◽

10.1093/jaoac/78.3.802 ◽

1995 ◽

Vol 78 (3) ◽

pp. 802-806 ◽

Cited By ~ 46

Author(s):

José Louis Rodriguez-Otero ◽

Maria Hermida ◽

Alberto Cepeda

Keyword(s):

Near Infrared ◽

Independent Set ◽

Nir Spectroscopy ◽

Partial Least Square ◽

Least Square ◽

Partial Least Square Regression ◽

Sample Treatment ◽

Infrared Reflectance ◽

Near Infrared Reflectance ◽

Total Solids

Abstract Near-infrared reflectance (NIR) spectroscopy was used to analyze fat, protein, and total solids in cheese without any sample treatment. A set of 92 samples of cow’s milk cheese was used for instrument calibration by principal components analysis and modified partial least-square regression. The following statistical values were obtained: standard error of calibration (SEC) = 0.388 and squared correlation coefficient (R2) = 0.99 for fat, SEC = 0.397 and R2 = 0.98 for protein, and SEC = 0.412 and R2 = 0.99 for total solids. To validate the calibration, an independent set of 25 cheese samples of the same type was used. Standard errors of validation were 0.47,0.50, and 0.61 for fat, protein, and total solids, respectively, and hf for the regression of measurements by reference methods versus measurements by NIR spectroscopy was 0.98 for the 3 components.

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Analysis of protein glycation in human fingernail clippings with near-infrared (NIR) spectroscopy as an alternative technique for the diagnosis of diabetes mellitus

Clinical Chemistry and Laboratory Medicine (CCLM) ◽

10.1515/cclm-2018-0239 ◽

2018 ◽

Vol 56 (9) ◽

pp. 1551-1558 ◽

Cited By ~ 10

Author(s):

Tinne Monteyne ◽

Renaat Coopman ◽

Antoine S. Kishabongo ◽

Jonas Himpe ◽

Bruno Lapauw ◽

...

Keyword(s):

Diabetes Mellitus ◽

Healthy Subjects ◽

Near Infrared ◽

Nir Spectroscopy ◽

Partial Least Square ◽

Least Square ◽

Protein Glycation ◽

Patients With Diabetes ◽

Diagnosis Of Diabetes Mellitus

Abstract Background: Glycated keratin allows the monitoring of average tissue glucose exposure over previous weeks. In the present study, we wanted to explore if near-infrared (NIR) spectroscopy could be used as a non-invasive diagnostic tool for assessing glycation in diabetes mellitus. Methods: A total of 52 patients with diabetes mellitus and 107 healthy subjects were enrolled in this study. A limited number (n=21) of nails of healthy subjects were glycated in vitro with 0.278 mol/L, 0.556 mol/L and 0.833 mol/L glucose solution to study the effect of glucose on the nail spectrum. Consequently, the nail clippings of the patients were analyzed using a Thermo Fisher Antaris II Near-IR Analyzer Spectrometer and near infrared (NIR) chemical imaging. Spectral classification (patients with diabetes mellitus vs. healthy subjects) was performed using partial least square discriminant analysis (PLS-DA). Results: In vitro glycation resulted in peak sharpening between 4300 and 4400 cm−1 and spectral variations at 5270 cm−1 and between 6600 and 7500 cm−1. Similar regions encountered spectral deviations during analysis of the patients’ nails. Optimization of the spectral collection parameters was necessary in order to distinguish a large dataset. Spectra had to be collected at 16 cm−1, 128 scans, region 4000–7500 cm−1. Using standard normal variate, Savitsky-Golay smoothing (7 points) and first derivative preprocessing allowed for the prediction of the test set with 100% correct assignments utilizing a PLS-DA model. Conclusions: Analysis of protein glycation in human fingernail clippings with NIR spectroscopy could be an alternative affordable technique for the diagnosis of diabetes mellitus.

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Monitoring of CO2 Absorption Solvent in Natural Gas Process Using Fourier Transform Near-Infrared Spectrometry

International Journal of Analytical Chemistry ◽

10.1155/2020/9830685 ◽

2020 ◽

Vol 2020 ◽

pp. 1-9

Author(s):

Mohd Yusop Nurida ◽

Dolmat Norfadilah ◽

Mohd Rozaiddin Siti Aishah ◽

Chan Zhe Phak ◽

Syafiqa M. Saleh

Keyword(s):

Fourier Transform ◽

Near Infrared ◽

Nir Spectroscopy ◽

Partial Least Square ◽

Least Square ◽

Infrared Spectrometry ◽

Calibration Model ◽

Co2 Absorption ◽

Processing Unit

The analytical methods for the determination of the amine solvent properties do not provide input data for real-time process control and optimization and are labor-intensive, time-consuming, and impractical for studies of dynamic changes in a process. In this study, the potential of nondestructive determination of amine concentration, CO2 loading, and water content in CO2 absorption solvent in the gas processing unit was investigated through Fourier transform near-infrared (FT-NIR) spectroscopy that has the ability to readily carry out multicomponent analysis in association with multivariate analysis methods. The FT-NIR spectra for the solvent were captured and interpreted by using suitable spectra wavenumber regions through multivariate statistical techniques such as partial least square (PLS). The calibration model developed for amine determination had the highest coefficient of determination (R2) of 0.9955 and RMSECV of 0.75%. CO2 calibration model achieved R2 of 0.9902 with RMSECV of 0.25% whereas the water calibration model had R2 of 0.9915 with RMSECV of 1.02%. The statistical evaluation of the validation samples also confirmed that the difference between the actual value and the predicted value from the calibration model was not significantly different and acceptable. Therefore, the amine, CO2, and water models have given a satisfactory result for the concentration determination using the FT-NIR technique. The results of this study indicated that FT-NIR spectroscopy with chemometrics and multivariate technique can be used for the CO2 solvent monitoring to replace the time-consuming and labor-intensive conventional methods.

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