scholarly journals The CGI121 gene from Saccharomyces cerevisiae demonstrates genetic linkage to increased lag time under enological conditions

2020 ◽  
Author(s):  
Runze Li ◽  
Rebecca C. Deed
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Low Temperatures ◽  
Genetic Linkage ◽  
Lag Time ◽  
Lag Phase ◽  
Phenotypic Traits ◽  
Phase Duration ◽  
Fermentation Kinetics ◽  
Lag Times ◽  
The Impact

Abstract Background In winemaking, it is standard practice to ferment white wines at low temperatures (10–18 ºC). However, low temperatures increase the fermentation duration and risk of problem ferments, which can lead to significant costs. The length of the lag period at fermentation initiation is one parameter that is heavily impacted by low temperatures. Therefore, the identification of Saccharomyces cerevisiae genes with an impact on fermentation kinetics, such as lag time, is of interest for winemaking. Results We selected a set of 28 S. cerevisiae BY4743 single deletants based on a prior list of candidate open reading frames (ORFs) mapped to quantitative trait loci (QTLs) on chromosomes VII and XIII influencing the duration of fermentative lag time by bulk segregant analysis. Five out of 28 BY4743 deletants, Δapt1, Δcgi121, Δclb6, Δrps17a, and Δvma21, differed significantly in their fermentative lag phase duration compared to BY4743 in synthetic grape medium (SGM) at 15 ºC, over 72 h. Fermentation at 12.5 ºC for 528 h, to show a greater resolution of the lag times, identified the inability of BY4743 Δapt1 to initiate fermentation and confirmed the significantly longer lag times of the BY4743 Δcgi121, Δrps17a, and Δvma21 deletants. The three candidate ORFs were deleted in S. cerevisiae RM11-1a and S288C to perform single reciprocal hemizygosity analysis (RHA). RHA hybrids and single deletants of RM11-1a and S288C were fermented at 12.5 ºC in SGM. Lag time measurements confirmed genetic linkage of CGI121 on chromosome XIII, encoding a component of the EKC/KEOPS complex, to fermentative lag phase. Nucleotide sequences of RM11-1a and S288C CGI121 alleles differed by only one synonymous nucleotide suggesting that codon bias or positional effects might be responsible for the impact of this gene on lag phase duration. Conclusion This research demonstrates a new role of CGI121 in fermentative lag time in S. cerevisiae during fermentation and highlights the applicability of QTL analysis for investigating complex phenotypic traits in yeast, such as fermentation kinetics.

scholarly journals Reciprocal hemizygosity analysis reveals that the Saccharomyces cerevisiae CGI121 gene affects lag time duration in synthetic grape must

2021 ◽  
Author(s):  
Runze Li ◽  
Rebecca C Deed
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Low Temperatures ◽  
Lag Time ◽  
Lag Phase ◽  
Phenotypic Traits ◽  
Time Duration ◽  
Phase Duration ◽  
Grape Must ◽  
The Impact ◽  
Reciprocal Hemizygosity Analysis

Abstract It is standard practice to ferment white wines at low temperatures (10-18 °C). However, low temperatures increase fermentation duration and risk of problem ferments, leading to significant costs. The lag duration at fermentation initiation is heavily impacted by temperature; therefore, identification of Saccharomyces cerevisiae genes influencing fermentation kinetics is of interest for winemaking. We selected 28 S. cerevisiae BY4743 single deletants, from a prior list of open reading frames (ORFs) mapped to quantitative trait loci (QTLs) on chromosomes VII and XIII, influencing the duration of fermentative lag time. Five BY4743 deletants, Δapt1, Δcgi121, Δclb6, Δrps17a, and Δvma21, differed significantly in their fermentative lag duration compared to BY4743 in synthetic grape must (SGM) at 15 °C, over 72 h. Fermentation at 12.5 °C for 528 h confirmed the longer lag times of BY4743 Δcgi121, Δrps17a, and Δvma21. These three candidate ORFs were deleted in S. cerevisiae RM11-1a and S288C to perform single reciprocal hemizygosity analysis (RHA). RHA hybrids and single deletants of RM11-1a and S288C were fermented at 12.5 °C in SGM and lag time measurements confirmed that the S288C allele of CGI121 on chromosome XIII, encoding a component of the EKC/KEOPS complex, increased fermentative lag phase duration. Nucleotide sequences of RM11-1a and S288C CGI121 alleles differed by only one synonymous nucleotide, suggesting that intron splicing, codon bias, or positional effects might be responsible for the impact on lag phase duration. This research demonstrates a new role of CGI121 and highlights the applicability of QTL analysis for investigating complex phenotypic traits in yeast.

scholarly journals Reciprocal hemizygosity analysis reveals that the Saccharomyces cerevisiae CGI121 gene affects lag time duration under enological conditions

2020 ◽  
Author(s):  
Runze Li ◽  
Rebecca C. Deed
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Low Temperatures ◽  
Lag Time ◽  
Open Reading Frames ◽  
Lag Phase ◽  
Phenotypic Traits ◽  
Time Duration ◽  
Phase Duration ◽  
The Impact ◽  
Reciprocal Hemizygosity Analysis

Abstract It is standard practice to ferment white wines at low temperatures (10-18ºC). However, low temperatures increase fermentation duration and risk of problem ferments, leading to significant costs. The lag duration at fermentation initiation is heavily impacted by temperature; therefore, identification of Saccharomyces cerevisiae genes impacting on fermentation kinetics is of interest for winemaking.We selected 28 S. cerevisiae BY4743 single deletants, from a prior list of open reading frames (ORFs) mapped to quantitative trait loci (QTLs) on chromosomes VII and XIII, influencing the duration of fermentative lag time. Five BY4743 deletants, Δapt1, Δcgi121, Δclb6, Δrps17a, and Δvma21, differed significantly in their fermentative lag duration compared to BY4743 in synthetic grape medium (SGM) at 15ºC, over 72 h. Fermentation at 12.5ºC for 528 h confirmed the longer lag times of BY4743 Δcgi121, Δrps17a, and Δvma21. These three candidate ORFs were deleted in S. cerevisiae RM11-1a and S288C to perform single reciprocal hemizygosity analysis (RHA). RHA hybrids and single deletants of RM11-1a and S288C were fermented at 12.5ºC in SGM and lag time measurements confirmed that the S288C allele of CGI121 on chromosome XIII, encoding a component of the EKC/KEOPS complex, increased fermentative lag phase duration. Nucleotide sequences of RM11-1a and S288C CGI121 alleles differed by only one synonymous nucleotide, suggesting that codon bias or positional effects might be responsible for the impact on lag phase duration. This research demonstrates a new role of CGI121 and highlights the applicability of QTL analysis for investigating complex phenotypic traits in yeast.

scholarly journals Historical and Contemporary NaCl Concentrations Affect the Duration and Distribution of Lag Times from Individual Spores of Nonproteolytic Clostridium botulinum

2007 ◽  
Vol 73 (7) ◽  
pp. 2118-2127 ◽  
Author(s):  
Martin D. Webb ◽  
Carmen Pin ◽  
Michael W. Peck ◽  
Sandra C. Stringer
Keyword(s):  
Growth Medium ◽  
Clostridium Botulinum ◽  
Lag Time ◽  
Lag Phase ◽  
Growth Media ◽  
Sporulation Medium ◽  
Mature Cell ◽  
Inhibitory Effects ◽  
Subsequent Growth ◽  
Lag Times

ABSTRACT In this study we determined the effect of NaCl concentration during sporulation (0 or 3.0% [wt/vol] added NaCl) and subsequent growth (0 or 2.0% [wt/vol] added NaCl) on the distributions of times associated with various stages of the lag phase of individual spores of nonproteolytic Clostridium botulinum strain Eklund 17B. The effects of NaCl on the probability of germination and the probability of subsequent growth were also determined. Spore populations exhibited considerable heterogeneity at all stages of lag phase for each condition tested. Germination time did not correlate strongly with the times for later stages in the lag phase, such as outgrowth and doubling time. Addition of NaCl to either the sporulation or growth media increased the mean times for, and variability of, all the measured stages of the lag phase (germination, emergence, time to one mature cell, and time to first doubling). There was a synergistic interaction between the inhibitory effects of NaCl in the sporulation medium and the inhibitory effects of NaCl in the subsequent growth medium on the total lag time and each of its stages. Addition of NaCl to either the sporulation medium or the growth medium reduced both the probability of germination and the probability of a germinated spore developing into a mature cell, but the interaction was not synergistic. Spores formed in medium with added NaCl were not better adapted to subsequent growth in suboptimal osmotic conditions than spores formed in medium with no added NaCl were. Knowledge of the distribution of lag times for individual spores and quantification of the biovariability within lag time distributions may provide insight into the underlying mechanisms and can be used to improve predictions of growth in food and to refine risk assessments.

scholarly journals Assessing the Impact of the Lead/Lag Times on the Project Duration Estimates in Highway Construction

2021 ◽  
Vol 4 (3) ◽  
Author(s):  
Mohamed Abdel Raheem ◽  
Jennifer Reyes ◽  
Xiaohui Wang ◽  
Grecia Silva Sanchez ◽  
Alyssa Marie Garza
Keyword(s):  
Highway Construction ◽  
Total Duration ◽  
Lag Time ◽  
Soil Conditions ◽  
Sensitivity Index ◽  
Highway Projects ◽  
Project Duration ◽  
Time Sensitivity ◽  
Lag Times ◽  
The Impact

The literature mentions multiple factors that can affect the accuracy of estimating the project duration in highway construction, such as weather, location, and soil conditions. However, there are other factors that have not been explored, yet they can have significant impact on the accuracy of the project time estimate. Recently, TxDOT raised a concern regarding the importance of the proper estimating of the lead/lag times in project schedules. These lead/lag times are often determined based on the engineer’s experience. However, inaccurate estimates of the lead/lag time can result in unrealistic project durations. In order to investigate this claim, the study utilizes four time sensitivity measures (TSM), namely the Criticality Index (CI), Significance Index (SI), Cruciality Index (CRI), and the Schedule Sensitivity Index (SSI) to statistically analyze and draw conclusions regarding the impact of the lead/lag time estimates on the total duration in highway projects. An Excel-based scheduling software was developed with Monte Carlo simulation capabilities to calculate these TSM. The results from this paper show that the variability of some lead/lag times can significantly impact the accuracy of the estimated total project duration. It was concluded that the current practices used for estimating the lead/lag times are insufficient. As such, it is recommended to utilize more robust methods, such as the time sensitivity measures, to accurately estimate the lead/lad times in the projects scheduled.

scholarly journals Influence of Stress on Single-Cell Lag Time and Growth Probability for Listeria monocytogenes in Half Fraser Broth

2009 ◽  
Vol 75 (10) ◽  
pp. 3069-3076 ◽  
Author(s):  
Claire Dupont ◽  
Jean-Christophe Augustin
Keyword(s):  
Listeria Monocytogenes ◽  
Single Cell ◽  
Physiological State ◽  
False Negative ◽  
Lag Time ◽  
Enrichment Broth ◽  
A Cell ◽  
Lag Times ◽  
The Impact ◽  
Growth Probability

ABSTRACT The impacts of 12 common food industry stresses on the single-cell growth probability and single-cell lag time distribution of Listeria monocytogenes were determined in half Fraser broth, the primary enrichment broth of the International Organization for Standardization detection method. First, it was determined that the ability of a cell to multiply in half Fraser broth is conditioned by its history (the probability for a cell to multiply can be decreased to 0.05), meaning that, depending on the stress in question, the risk of false-negative samples can be very high. Second, it was established that when cells are injured, the single-cell lag times increase in mean and in variability and that this increase represents a true risk of not reaching the detection threshold of the method in the enrichment broth. No relationship was observed between the impact on single-cell lag times and that on growth probabilities. These results emphasize the importance of taking into account the physiological state of the cells when evaluating the performance of methods to detect pathogens in food.

scholarly journals Large-Scale Screening of Thiol and Fermentative Aroma Production during Wine Alcoholic Fermentation: Exploring the Effects of Assimilable Nitrogen and Peptides

Fermentation ◽  
2020 ◽  
Vol 6 (4) ◽  
pp. 98
Author(s):  
Camille Duc ◽  
Faïza Maçna ◽  
Isabelle Sanchez ◽  
Virginie Galeote ◽  
Stéphane Delpech ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Large Scale ◽  
Alcoholic Fermentation ◽  
Environmental Parameters ◽  
Nitrogen Addition ◽  
Fermentation Kinetics ◽  
Aroma Production ◽  
The Impact ◽  
Assimilable Nitrogen ◽  
Large Scale Screening

In alcoholic fermentation, under oenological conditions, the environmental parameters impacting fermentation kinetics and aroma production have been widely studied. The nitrogen content of grape must was found to be one of the most important parameters for both of these aspects of fermentation. Many studies have been performed on the effect of mineral nitrogen addition. However, it has increasingly been observed that the nature of the nitrogen added leads to different results. Our work focused on the effects of peptide addition on both fermentation kinetics and aroma production. Peptides are one of the less well understood sources of assimilable nitrogen, as their incorporation by yeast remains unclear. In this study, we compared the effect of the addition of a “classic” assimilable nitrogen source (ammonium + amino acids) with that of peptide addition in both white and red must fermentation by screening 18 Saccharomyces cerevisiae strains in total. Our data show that peptide addition enhances fermentation kinetics and leads to specific changes in the production of fermentative aromas. The impact of peptides on thiol synthesis is rather limited.

scholarly journals Lag times and invasion dynamics of established and emerging weeds: insights from herbarium records of Queensland, Australia

2021 ◽  
Author(s):  
Olusegun O. Osunkoya ◽  
Claire B. Lock ◽  
Kunjithapatham Dhileepan ◽  
Joshua C. Buru
Keyword(s):  
Introduced Species ◽  
Significant Proportion ◽  
Lag Time ◽  
Linear Increase ◽  
Plant Distribution ◽  
Lag Phase ◽  
Weed Species ◽  
Historical Factors ◽  
Lag Times ◽  
Invasion Waves

AbstractHerbarium records provide comprehensive information on plant distribution, offering opportunities to construct invasion curves of introduced species, estimate their rates and patterns of expansions in novel ranges, as well as identifying lag times and hence “sleeper weeds”, if any. Lag times especially have rarely been determined for many introduced species, including weeds in the State of Queensland, Australia as the trait is thought to be unpredictable and cannot be screened for. Using herbarium records (1850–2010), we generated various invasiveness indices, and developed simple invasion and standardised proportion curves of changes in distribution with time for ~ 100 established and emerging weed species of Queensland. Four major periods (decades) of increased weed spread (spikes) were identified: 1850s, 1900–1920, 1950–1960 and 2000–2010, especially for grasses and trees/shrubs. Many weeds with spikes in spread periods did so only 1–2 decadal times, except for a few species with higher spike frequencies > 6; the majority of these spikes occurred recently (1950–1990). A significant proportion (~ 60%) of Queensland’s weeds exhibit non-linear increase in spread with time, and hence have lag phases (mean: 45.9 years; range: 12–126 years); of these lag-phase species, 39% are “sleeper” weeds with > 50 years of lag time (mainly trees/shrubs and grasses). Twelve traits of invasiveness, including lag time and species-specific/historical factors were screened, of which frequency of invasion waves, spread rates and residence time were the main drivers of weeds’ distribution. The low predictive power of lag time on weed distribution suggests that retrospective analyses offer little hope for a robust generalisation to identify weeds of tomorrow.

Effect of Glycosaminoglycans on Thrombin- and Atroxin-Induced Fibrin Assembly and Structure

1989 ◽  
Vol 62 (04) ◽  
pp. 1057-1061 ◽  
Author(s):  
Marcus E Carr ◽  
Patrick L Powers
Keyword(s):  
Chondroitin Sulfate ◽  
Fiber Diameter ◽  
Lag Phase ◽  
Low Molecular Weight ◽  
Fibrin Gels ◽  
Fiber Size ◽  
Induced Changes ◽  
The Impact ◽  
Fiber Radius ◽  
Turbidity Increase

SummaryThis study was performed to quantitate the impact of several glycosaminoglycans (GAG) on fibrin assembly and structure. Gel formation was monitored as the increase in optical density at 633 nm subsequent to thrombin (2 NIH u/ml) or atroxin (0.10 mg/ml) addition to solutions of buffered fibrinogen (1 mg/ml) or plasma. Gel absorbance was measured as a function of wavelength (400 to 800 nm) and gel fiber diameter and mass/length ratio (μ) were calculated. Chondroitin sulfate A (CSA)shortened the lag phase, enhanced the maximal rate of turbidity increase, and increased the final gel turbidity of fibrin gels formed by thrombin or atroxin. CSA (16 mg/ml) increased fiber μ from 1.3 to 3.1 × 1013 dalton/cm and fiber radius from 6.0 to 8.6 × 10-6 cm in thrombin-induced gels. μ increased from 0.7 to 2.7 × 1013 dalton/cm and fiber radius from 4 to 7.8 × 10-6 cm for atroxin-induced gels. Above 16 mg/ml, CSA caused fibrinogen precipitation in purified solutions but not in plasma. CSA inhibited thrombin-induced plasma clotting of plasma but effects in atroxin-mediated plasma gels paralleled those seen in purified solutions. Chondroitin sulfate B (CSB)-induced changes in fibrin were similar but slightly less dramatic than those seen with CSA. μ increased from 0.9 to 2.0 × 1013 dalton/cm for thrombin-induced fibrin gels and from 0.8 to 2.3 × 1013 dalton/cm for atroxininduced gels. Low molecular weight heparin (Mr = 5100) slowed fibrin assembly and reduced fiber size by 50% in thrombininduced gels. Changes in μ of atroxin-induced gels were much less pronounced (<20%). This study documents pronounced GAGinduced changes in fibrin structure which vary with GAG species and may mediate significant physiologic functions.

Development and Evaluation of Floating Pulsatile Drug Delivery System Using Meloxicam

2017 ◽  
Vol 7 (04) ◽  
Author(s):  
ShirishaG. Suddala ◽  
S. K. Sahoo ◽  
M. R. Yamsani
Keyword(s):  
Rheumatoid Arthritis ◽  
Drug Delivery ◽  
Drug Release ◽  
Drug Delivery System ◽  
Delivery System ◽  
Lag Time ◽  
Oral Dosage ◽  
Lag Phase ◽  
Pulsatile Drug Delivery

Objective: The objective of this research work was to develop and evaluate the floating– pulsatile drug delivery system (FPDDS) of meloxicam intended for Chrono pharmacotherapy of rheumatoid arthritis. Methods: The system consisting of drug containing core, coated with hydrophilic erodible polymer, which is responsible for a lag phase for pulsatile release, top cover buoyant layer was prepared with HPMC K4M and sodium bicarbonate, provides buoyancy to increase retention of the oral dosage form in the stomach. Meloxicam is a COX-2 inhibitor used to treat joint diseases such as osteoarthritis and rheumatoid arthritis. For rheumatoid arthritis Chrono pharmacotherapy has been recommended to ensure that the highest blood levels of the drug coincide with peak pain and stiffness. Result and discussion: The prepared tablets were characterized and found to exhibit satisfactory physico-chemical characteristics. Hence, the main objective of present work is to formulate FPDDS of meloxicam in order to achieve drug release after pre-determined lag phase. Developed formulations were evaluated for in vitro drug release studies, water uptake and erosion studies, floating behaviour and in vivo radiology studies. Results showed that a certain lag time before drug release which was due to the erosion of the hydrophilic erodible polymer. The lag time clearly depends on the type and amount of hydrophilic polymer which was applied on the inner cores. Floating time and floating lag time was controlled by quantity and composition of buoyant layer. In vivo radiology studies point out the capability of the system of longer residence time of the tablets in the gastric region and releasing the drug after a programmed lag time. Conclusion: The optimized formulation of the developed system provided a lag phase while showing the gastroretension followed by pulsatile drug release that would be beneficial for chronotherapy of rheumatoid arthritis and osteoarthritis.

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