scholarly journals Identification and Characterization of Genes Involved in the Fruit Color Development of European Plum

2016 ◽  
Vol 141 (5) ◽  
pp. 467-474 ◽  
Author(s):  
Dineshkumar Selvaraj ◽  
Sherif Sherif ◽  
Mohd Sabri Pak Dek ◽  
Gopinadhan Paliyath ◽  
Islam El-Sharkawy ◽  
...  
Keyword(s):  
Anthocyanin Biosynthesis ◽  
Expression Profiles ◽  
Anthocyanin Content ◽  
Reading Frame ◽  
Color Development ◽  
Anthocyanin Production ◽  
Modern Breeding ◽  
Identification And Characterization ◽  
Anthocyanin Biosynthetic Genes

European plum fruit (Prunus domestica) are normally blue-black to dark purple. However, some genotypes remain green/yellow after ripening. We hypothesized that in such genotypes anthocyanin biosynthesis is genetically disturbed. To examine this hypothesis, six european plum genotypes with diverse fruit colors were investigated for the expression pattern of several anthocyanin biosynthetic genes (ABGs)—e.g., phenylalanine ammonia-lyase, chalcone synthase (CHS), dihydroflavonol 4-reductase (DFR), anthocyanin synthase (ANS), and UDP-glucose:flavonoid 3-O-glucosyltransferase 1 and 2 (UFGT 1 and 2). Expression profiles indicated that ABGs, especially Pd-CHS and UFGT 2, were significantly downregulated in the green/yellow fruit compared with the dark-purple fruit. Furthermore, the quantification of total polyphenols and individual flavonoid compounds showed substantial differences between the off-colored and the purple genotype. To further examine the contribution of each of the ABGs in color development, the open reading frame (ORP) of Pd-CHS, Pd-DFR, Pd-ANS, and Pd-UFGT 2 was ectopically expressed in tobacco (Nicotiana tabacum). The characterization of transgenic plants showed that the petals of plants expressing Pd-CHS were darker in color and had higher anthocyanin content than control or even other transgenic types, suggesting the significant contribution of CHS in determining anthocyanin production levels and hence fruit coloration. The results of this study provides better understanding of color development in european plum, which can be rewarding in developing european plum cultivars with desired colors through classical or modern breeding tools.

scholarly journals Differential expression profiles of anthocyanidin biosynthesis gene during black rice seed development

2021 ◽  
pp. 36-40
Author(s):  
Yeon Bok Kim ◽  
Ramaraj Sathasivam ◽  
Soo-Un Kim ◽  
Sang Un Park
Keyword(s):  
Seed Development ◽  
Anthocyanin Biosynthesis ◽  
Expression Profiles ◽  
Mrna Level ◽  
Transcript Level ◽  
Anthocyanin Content ◽  
Rice Seed ◽  
Black Rice ◽  
Absolute Level ◽  
Anthocyanin Production

The black rice (Oryza sativa cv. Heugjinju) is rich in anthocyanins which is beneficial to human health. To correlate the biosynthesis of the pigments with relevant genes, the mRNA level of genes involved in anthocyanin biosynthesis was monitored by quantitative real-time polymerase chain reaction (qRT-PCR) during seed development of black rice. The mRNA level of F3’H, DFR, and ANS, key enzymes in anthocyanidin biosynthesis, peaked at 10 days after flowering. In general, the absolute level of ANS was approximately one order higher than F3’H, F3’5’H, and DFR in 10 days after flowering. The transcript level of major seed protein gene GluA-3, taken as reference, was also at the highest on the 10 days after flowering. However, the level of CHS isogenes was highest at 15 or 20 days after flowering. The highest transcript level of the genes, except CHS, preceded the highest anthocyanidin content by 5 days. This pattern coincided with an increase of anthocyanin content between 10 and 15 days after flowering. From these findings, it is suggested that particular CHS isoforms might be responsible for the anthocyanin production in black rice.

scholarly journals Anthocyanin Accumulation and Related Gene Expression Profile in ‘Red Zaosu’ Pear and Its Green Mutant

Agriculture ◽  
2021 ◽  
Vol 11 (9) ◽  
pp. 898
Author(s):  
Yunting Zhang ◽  
Shanlin Li ◽  
Xianjie Gu ◽  
Diya Lei ◽  
Bing Zhao ◽  
...  
Keyword(s):  
Gene Expression ◽  
Anthocyanin Biosynthesis ◽  
Expression Profiles ◽  
Expression Patterns ◽  
Anthocyanin Content ◽  
Anthocyanin Accumulation ◽  
Biosynthetic Genes ◽  
Specific Expression ◽  
Anthocyanin Biosynthetic Genes ◽  
Green Mutant

Red-skinned pear is a promising commercial fruit due to its attractive appearance and nutritious value. Anthocyanin is the determinant of the red coloration of the pear peel. However, differences in anthocyanin accumulation exist among red pear cultivars with different genetic backgrounds. In this study, we analyzed the anthocyanin content and gene expression patterns in the fruits and different tissues of the red pear ‘Red Zaosu’ at different developmental stages and found a difference in anthocyanin accumulation between ‘Red Zaosu’ pear and its green mutant. The data showed that the expression profiles of transcripts that encoded critical anthocyanin biosynthetic genes were basically consistent with a tendency to a decreased anthocyanin content during fruit development, indicating that a synergistic effect of these genes was responsible for anthocyanin biosynthesis and regulation. Tissue-specific expression analysis of anthocyanin biosynthetic genes showed that they could be expressed in all tissues but at different levels. PbF3H, PbDFR, and PbANS were mainly expressed during the early flowering period, which explained the reduced levels of anthocyanin content in petals. Additionally, the content of anthocyanins and the expression levels of PbDFR, PbANS, and PbMYB10 significantly decreased in the green mutant of ‘Red Zaosu’, suggesting that PbDFR, PbANS, and PbMYB10 probably play a decisive role in determining the skin coloration of ‘Red Zaosu’ and its green mutant.

scholarly journals Transcriptome-based identification and characterization of genes responding to imidacloprid in Myzus persicae

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Jianyu Meng ◽  
Xingjiang Chen ◽  
Changyu Zhang
Keyword(s):  
Genetic Basis ◽  
Expression Profiles ◽  
Control Measure ◽  
Effective Control ◽  
Agricultural Pest ◽  
Functional Classification ◽  
Quantitative Real Time Pcr ◽  
Underlying Mechanisms ◽  
Identification And Characterization

Abstract Myzus persicae is a serious and widespread agricultural pest, against which, imidacloprid remains an effective control measure. However, recent reports indicate that this aphid has evolved and developed resistance to imidacloprid. This study aimed to elucidate the underlying mechanisms and genetic basis of this resistance by conducting comparative transcriptomics studies on both imidacloprid-resistant (IR) and imidacloprid-susceptible (IS) M. persicae. The comparative analysis identified 252 differentially expressed genes (DEGs) among the IR and IS M. persicae transcriptomes. These candidate genes included 160 and 92 genes that were down- and up-regulated, respectively, in the imidacloprid-resistant strain. Using functional classification in the GO and KEGG databases, 187 DEGs were assigned to 303 functional subcategories and 100 DEGs were classified into 45 pathway groups. Moreover, several genes were associated with known insecticide targets, cuticle, metabolic processes, and oxidative phosphorylation. Quantitative real-time PCR of 10 DEGs confirmed the trends observed in the RNA sequencing expression profiles. These findings provide a valuable basis for further investigation into the complicated mechanisms of imidacloprid resistance in M. persicae.

Cloning and characterization of an alternative splicing transcript of the gene coding for human cytidine deaminase

2007 ◽  
Vol 85 (1) ◽  
pp. 96-102 ◽  
Author(s):  
Bianca Cristina Garcia Lisboa ◽  
Tamara da Rocha Machado ◽  
Daniel Carvalho Pimenta ◽  
Sang Won Han
Keyword(s):  
Alternative Splicing ◽  
Dna Sequences ◽  
Genomic Sequence ◽  
Cytidine Deaminase ◽  
Alternative Form ◽  
Nih3t3 Cells ◽  
Reading Frame ◽  
Gene Coding ◽  
Identification And Characterization

Human cytidine deaminase (HCD) catalyzes the deamination of cytidine or deoxycytidine to uridine or deoxyuridine, respectively. The genomic sequence of HCD is formed by 31 kb with 4 exons and several alternative splicing signals, but an alternative form of HCD has yet to be reported. Here we describe the cloning and characterization of a small form of HCD, HSCD, and it is likely to be a product of alternative splicing of HCD. The alignment of DNA sequences shows that the HSCD matches HCD in 2 parts, except for a deletion of 170 bp. Based on the HCD genome organization, exons 1 and 4 should be joined and all sequences of introns and exons 2 and 3 should be deleted by splicing. This alternative splicing shifted the translation of the reading frame from the point of splicing. The estimated molecular mass is 9.8 kDa, and this value was confirmed by Western blot and mass spectroscopy after expressing the gene fused with glutathionine-S-transferase in the pGEX vector. The deletion and shift of the reading frame caused a loss of HCD activity, which was confirmed by enzyme assay and also with NIH3T3 cells modified to express HSCD and challenged against cytosine arabinoside. In this work we describe the identification and characterization of HSCD, which is the product of alternative splicing of the HCD gene.

Identification and characterization of G90, a novel mouse RNA that lacks an extensive open reading frame

Gene ◽  
1999 ◽  
Vol 232 (1) ◽  
pp. 35-42 ◽  
Author(s):  
Ralf Krause ◽  
Myriam Hemberger ◽  
Heinz Himmelbauer ◽  
Vera Kalscheuer ◽  
Reinald H. Fundele
Keyword(s):  
Open Reading Frame ◽  
Reading Frame ◽  
Identification And Characterization

scholarly journals Identification and Characterization of Basil Anthocyanins

HortScience ◽  
1997 ◽  
Vol 32 (3) ◽  
pp. 464E-464
Author(s):  
Winthrop B. Phippen ◽  
James E. Simon
Keyword(s):  
High Pressure ◽  
Liquid Chromatography ◽  
Ocimum Basilicum ◽  
Anthocyanin Content ◽  
Total Anthocyanin ◽  
Medicinal Compound ◽  
Plasma Desorption ◽  
Total Anthocyanin Content ◽  
Identification And Characterization

The importance of anthocyanins as a food coloring, UV protectant, inhibitor of pathogens, and medicinal compound has been well-documented, with more than 300 anthocyanin compounds being reported in plants. The Lamiaceae family, including sage, thyme, and basil, has long been recognized as a rich source of diverse and unique anthocyanins. Because purple basil varieties have become more popular in the ornamental and herb trade, we conducted a study to identify and characterize the anthocyanins present in eight varieties of purple basils (Ocimum basilicum) utilizing high-pressure liquid chromatography, spectral data and plasma-desorption mass spectronomy. Nine different anthocyanins were identified. Seven of the pigments were cyanidin-based, with cyanidin-3-(6”-p-coumarylglucoside)-5-(6”'-malonylglucoside) as the major pigment. Two minor pigments based on peonidin were also identified. Total anthocyanin content was also determined and comparisons made to other anthocyanin sources.

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