scholarly journals Food for everyone: differential feeding habits of cryptic bat species inferred from DNA metabarcoding

2021 ◽  
Author(s):  
Tommy Andriollo ◽  
Johan Michaux ◽  
Manuel Ruedi
Keyword(s):  
Species Coexistence ◽  
Feeding Habits ◽  
Habitat Preferences ◽  
Trophic Niche ◽  
Genetic Identification ◽  
Exclusion Principle ◽  
Feeding Guilds ◽  
Hunting Behavior ◽  
Geographic Scale ◽  
Dna Metabarcoding

Ecological theory postulates that the niche of co-occurring species must differ along some ecological dimensions in order to allow their stable coexistence. Yet, many biological systems challenge this competitive exclusion principle. For instance, insectivorous bats from the Northern Hemisphere typically form local assemblages of multiple species sharing highly similar functional traits and pertaining to identical feeding guilds. Although their trophic niche can be accessed with unprecedented details using genetic identification of prey, the underlying mechanisms of resource partitioning remain vastly unexplored. Here, we studied the differential diet of three phenotypically and phylogenetically closely-related bat species of the genus Plecotus in an area of sympatry and throughout their entire breeding season (April-October) using DNA metabarcoding. Even at such a small geographic scale, we identified strong seasonal and spatial variation of their trophic niche at both intra- and inter-specific levels. Indeed, while the different bats fed on a distinct array of prey during spring, they showed higher niche overlap during summer and fall, when all three bat species switched their hunting behavior to feed on few temporarily abundant moths. Furthermore, by considering the ecological traits of prey species, we inferred from the menu of each bat species that feeding grounds and hunting techniques differed suggesting that niche partitioning was primarily habitat-driven. As predicted by their phylogenetic relationships, the two most-closely related bat species exhibited the most distinct foraging habitat preferences, while the third, more distantly-related species was more generalist. These results highlight the need of extensive samples to fully understand species coexistence.

Environmental DNA

2018 ◽  
Author(s):  
Pierre Taberlet ◽  
Aurélie Bonin ◽  
Lucie Zinger ◽  
Eric Coissac
Keyword(s):  
Graduate Students ◽  
Feeding Habits ◽  
Environmental Dna ◽  
Research Field ◽  
Background Information ◽  
Ecological Processes ◽  
Biodiversity Research ◽  
Dna Metabarcoding ◽  
Standard Information

Environmental DNA (eDNA), i.e. DNA released in the environment by any living form, represents a formidable opportunity to gather high-throughput and standard information on the distribution or feeding habits of species. It has therefore great potential for applications in ecology and biodiversity management. However, this research field is fast-moving, involves different areas of expertise and currently lacks standard approaches, which calls for an up-to-date and comprehensive synthesis. Environmental DNA for biodiversity research and monitoring covers current methods based on eDNA, with a particular focus on “eDNA metabarcoding”. Intended for scientists and managers, it provides the background information to allow the design of sound experiments. It revisits all steps necessary to produce high-quality metabarcoding data such as sampling, metabarcode design, optimization of PCR and sequencing protocols, as well as analysis of large sequencing datasets. All these different steps are presented by discussing the potential and current challenges of eDNA-based approaches to infer parameters on biodiversity or ecological processes. The last chapters of this book review how DNA metabarcoding has been used so far to unravel novel patterns of diversity in space and time, to detect particular species, and to answer new ecological questions in various ecosystems and for various organisms. Environmental DNA for biodiversity research and monitoring constitutes an essential reading for all graduate students, researchers and practitioners who do not have a strong background in molecular genetics and who are willing to use eDNA approaches in ecology and biomonitoring.

Feeding ecology of Symbolophorus californiensis larvae (Teleostei: Myctophidae) in the southern transition region of the western North Pacific

2009 ◽  
Vol 90 (6) ◽  
pp. 1249-1256 ◽  
Author(s):  
Chiyuki Sassa
Keyword(s):  
Transition Region ◽  
North Pacific ◽  
Western North Pacific ◽  
Developmental Stages ◽  
Feeding Habits ◽  
Larval Growth ◽  
Trophic Niche ◽  
Size Class ◽  
Gut Contents ◽  
Wide Range

The feeding habits of myctophid larvae of Symbolophorus californiensis were examined in the southern transition region of the western North Pacific where the main spawning and nursery grounds of S. californiensis are formed. This species is a key component of the pelagic ecosystems of this region, and their larvae attain one of the largest sizes among myctophids. To analyse gut contents larvae, including most life history stages after yolk-sac absorption (3.7 to 22.2 mm body length (BL)), were collected in the upper 100 m layer in 1997 and 1998. Feeding incidence was higher during the day than at night (53.1–92.3% versus 0–5.6%), and daytime feeding incidence increased gradually with larval growth. Larvae fed mainly on copepods of various developmental stages. Larvae of S. californiensis showed an ontogenetic change in their diet: larvae ≤7.9 mm BL (i.e. preflexion stage) fed mainly on copepod eggs and nauplii, while the larvae ≥8 mm BL consumed mainly calanoid copepodites such as Pseudocalanus and Paracalanus spp. In the largest size-class (16–22.2 mm BL), the furcilia stage of euphausiids was also an important prey item. There was an increase in the average prey size with growth in larvae ≤11.9 mm BL, while the number of prey eaten positively correlated with growth in larvae ≥12 mm BL. The trophic niche breadth also increased with larval growth, which would ensure a wide range of available food resources for the larger size-class larvae.

Spatial instabilities untie the exclusion-principle constraint on species coexistence

2013 ◽  
Vol 335 ◽  
pp. 198-204 ◽  
Author(s):  
Jonathan Nathan ◽  
Jost von Hardenberg ◽  
Ehud Meron
Keyword(s):  
Species Coexistence ◽  
Exclusion Principle

Feeding habits and trophic level of the smooth hammerhead shark, Sphyrna zygaena (Carcharhiniformes: Sphyrnidae), off Ecuador

2018 ◽  
Vol 99 (3) ◽  
pp. 673-680 ◽  
Author(s):  
Colombo Estupiñán-Montaño ◽  
Luis Cedeño-Figueroa ◽  
José F. Estupiñán-Ortiz ◽  
Felipe Galván-Magaña ◽  
Alejandro Sandoval-Londoño ◽  
...  
Keyword(s):  
Trophic Level ◽  
Feeding Habits ◽  
Trophic Niche ◽  
Commercial Fishing ◽  
Dosidicus Gigas ◽  
Apex Predators ◽  
Marine Food Webs ◽  
Fishing Vessels ◽  
Marine Food ◽  
Index Of Relative Importance

As apex predators, sharks are known to play an important role in marine food webs. Detailed information on their diet and trophic level is however needed to make clear inferences about their role in the ecosystem. A total of 335 stomachs of smooth hammerhead sharks, Sphyrna zygaena, were obtained from commercial fishing vessels operating in the Ecuadorian Pacific between January and December 2004. A total of 53 prey items were found in the stomachs. According to the Index of Relative Importance (%IRI), cephalopods were the main prey (Dosidicus gigas, Sthenoteuthis oualaniensis, Ancistrocheirus lesueurii and Lolliguncula [Loliolopsis] diomedeae). Sphyrna zygaena was thus confirmed to be a teutophagous species. The estimated trophic level of S. zygaena was between 4.6 and 5.1 (mean ± SD: 4.7 ± 0.16; males: 4.7; females: 4.8). Levin's index (BA) was low (overall: 0.07; males: 0.08; females: 0.09), indicating a narrow trophic niche. We found that sharks <150 cm in total length consumed prey of coastal origin, whereas sharks ≥150 cm foraged in oceanic waters and near the continental shelf. The analyses indicate that S. zygaena is a specialized predator consuming mainly squids.

scholarly journals Trophic niche breadth of pond zooplankton species using stable isotope analysis and the relationship with the abiotic and biotic factors

2019 ◽  
Vol 6 (1) ◽  
pp. 180917 ◽  
Author(s):  
Hideyuki Doi ◽  
Kwang-Hyeon Chang ◽  
Shin-ichi Nakano
Keyword(s):  
Stable Isotope ◽  
Niche Breadth ◽  
Resource Competition ◽  
Feeding Habits ◽  
Zooplankton Biomass ◽  
Trophic Niche ◽  
Zooplankton Species ◽  
Carbon And Nitrogen ◽  
Ecosystem Size ◽  
The Relationship

Zooplankton species have different feeding habits, but the diversity of their food resources and the factors governing them are still largely unknown. We here estimated the differences in the trophic niche breadths of dominant zooplankton species in ponds, using stable isotopes. To understand the differences in trophic niches of different zooplankton species, we measured the carbon and nitrogen stable isotope ratios and calculated the nearest-neighbour distance (NND), and standard deviation of NND (SDNND) of the bi-plot space of stable carbon and nitrogen isotopes in pond zooplankton. We tested the relationship between the NND/SDNND and environmental factors, as well as the zooplankton biomass, using generalized linear models (GLMs). For cladocerans, including Bosmina, Ceriodaphnia and Daphnia, the NNDs were significantly correlated with the biomass, pond morphology (volume and depth), total phosphorous (TP) and fish presence. For copepod species, including Eodiaptomus and cyclopoids, NNDs were significantly correlated with pond morphology, TP and fish presence, but not with biomass. In GLMs of SDNND, significant correlated factors were less than those for NND, and for some species, pond morphology and TP were significantly correlated with SDNND. Here, we found that the NND and SDNND of zooplankton species were related to various factors, including their biomass, predator presence, pond size and water quality. For cladocerans, biomass may be supported by trophic niche breadth, probably because of the consequences of resource competition. Also, predation and ecosystem size may influence trophic niche breadth due to changes in zooplankton behaviours.

Trophic ecology of large pelagic fish in the Saint Peter and Saint Paul Archipelago, Brazil

2019 ◽  
Vol 70 (10) ◽  
pp. 1402 ◽  
Author(s):  
F. V. Albuquerque ◽  
A. F. Navia ◽  
T. Vaske ◽  
O. Crespo ◽  
F. H. V. Hazin
Keyword(s):  
Trophic Ecology ◽  
Feeding Habits ◽  
Saint Paul ◽  
Pelagic Fish ◽  
Trophic Niche ◽  
Trophic Relationships ◽  
Main Prey ◽  
Important Prey ◽  
Saint Peter ◽  
Prey Items

Trophic relationships of large pelagic predators can determine the structure and dynamics of oceanic food webs. The feeding habits and trophic ecology of five large pelagic fish (Acanthocybium solandri, Coryphaena hippurus, Elagatis bipinnulata, Thunnus albacares and Thunnus atlanticus) in the Saint Peter and Saint Paul Archipelago were evaluated to determine whether there is a trophic-niche overlap or resource partitioning among them. Eighty prey items found in 1528 stomachs were identified and grouped into Cephalopoda, Cnidaria, Crustacea, Gastropoda, Teleostei and Tunicata. Exocoetidae and Scombridae were the main prey in the diet of Acanthocybium solandri. In C. hippurus, Cheilopogon cyanopterus and Exocoetus volitans were the most important prey items, whereas C. cyanopterus was the main prey for T. albacares. Thunnus atlanticus consumed a great proportion of invertebrate species, with shrimps of Sergestidae family being particularly important. The gastropod Cavolinia sp. was the most important prey for E. bipinnulata. The five species had a high trophic specialisation and a high trophic level (&gt;4.4), whereas most dietary overlaps were consistently low. The most important factor for diet dissimilarity was the consumption of Exocoetidade. All species were classified as top predators with varied diets, indicating their structural and functional importance in the food web of the Archipelago.

scholarly journals Taxonomy-based differences in feeding guilds of fish

2019 ◽  
Vol 66 (1) ◽  
pp. 51-56
Author(s):  
Javier Sánchez-Hernández
Keyword(s):  
Trophic Ecology ◽  
Feeding Habits ◽  
Empirical Support ◽  
Taxonomic Resolution ◽  
Feeding Guilds ◽  
Generic Level ◽  
Taxonomic Relatedness ◽  
Genus Level ◽  
Marine Vs Freshwater ◽  
And Behavior

Abstract It has been taken for granted that feeding guilds and behavior in animals are linked to the taxonomic relatedness of species, but empirical evidence supporting such relationship is virtually missing. To examine the importance of taxonomy on trophic ecology, I here present the first well-resolved dietary taxonomy analysis based on feeding guilds (predation, herbivory, and filtering) among families and genera within the fish order Perciformes. Taxonomic relatedness in feeding did not vary with ecosystem dimension (marine vs. freshwater). Although predation dominates among Perciformes fishes, this study shows that in most cases taxonomic units (family or genus) are composed by species with several feeding guilds. Related species are more similar in feeding compared with species that are taxonomically more distant, demonstrating that there is a greater variation of feeding guilds within families than genera. Thus, there is no consistency in feeding guilds between family- and genus-level taxonomy. This study provides empirical support for the notion that genera are more informative than families, underlining that family-level taxonomy should be avoided to infer feeding habits of fish species at finer taxonomic resolution. Thus, the choice of taxonomic resolution (family or genus level) in ecological studies is key to avoid information loss and misleading results. I conclude that high-rank taxonomic units (i.e., above the generic level) are not appropriate to test research hypotheses about the feeding of fish.

scholarly journals Food habits of the Cougar Puma concolor (Carnivora: Felidae) in the Central Andes of the Colombian Coffee Region

2020 ◽  
Vol 60 ◽  
pp. e20206023
Author(s):  
Diana Camila Muñoz Castillo ◽  
Pauline Perry Arbeláez ◽  
Héctor Fabio Arias-Monsalve ◽  
Héctor E. Ramírez-Chaves
Keyword(s):  
Prey Species ◽  
Puma Concolor ◽  
Feeding Habits ◽  
Relevant Literature ◽  
Central Andes ◽  
Trophic Niche ◽  
General Nature ◽  
History Museum ◽  
Domestic Species ◽  
Important Region

The feeding habits of the cougar have been scarcely studied in Colombia, despite its importance in the ecosystems it inhabits. In this study, we analysed the diet of the cougar using 53 feces samples collected from several sites in the Central Andes of Colombia’s Coffee Growing Region. To identify prey species, we examined and compared bone fragments and hairs found in each sample with descriptions published in relevant literature and with specimens from the Natural History Museum of the Universidad de Caldas, Colombia. We found that rabbits (Sylvilagus sp.) provided half of the relative biomass consumed by the cougar (50%). Other preys identified belong to representatives of medium and large mammals such as marsupials (Didelphis: 10%), sloths (Choloepus: 9%), rodents (Coendou: 10%, Cuniculus: 9%), and deer (Mazama: 9%). Of the preys, Coendou rufescens has not, to our knowledge, been previously included in cougar diet literature. The curve of accumulation of species indicated that the number of samples obtained in this work fully describe the diet of this feline. Neither domestic species were recorded in this work, nor were there any relationships between the dry or rainy seasons and the consumption of prey species. The comparison of the information reported in this study and others carried out in the Andes may indicate the general nature of this feline’s diet and its adaptability to the prey species found in each area, since these vary in each one of them. It is probable that the obtained trophic niche value (0.33) is due to the abundance of rabbits present in the study area. It is also probable that the cougar has not consumed domestic species since, although it is close to cattle ranches, it has enough of wild prey in the area to supply its needs. The results of this study may help to improve our understanding of the feeding habits of this predator and its interaction with other species in this important region of Colombia. This will, in turn, promote major comprehension of the role of cougars in the Colombian Cordilleras and lead actions for their conservation.

scholarly journals Nymphal feeding habits of two Anacroneuria species (Plecoptera, Perlidae) from Sierra Nevada de Santa Marta, Colombia

2018 ◽  
Vol 78 (1) ◽  
Author(s):  
Yesely M. Hurtado ◽  
Cesar E. Tamaris-Turizo ◽  
Manuel J. López Rodriguez ◽  
J. Manuel Tierno de Figueroa
Keyword(s):  
Sierra Nevada ◽  
Rainy Season ◽  
Feeding Habits ◽  
Niche Overlap ◽  
Trophic Niche ◽  
Freshwater Ecosystems ◽  
Use Of Resources ◽  
Trophic Resources ◽  
Tropical Areas ◽  
Dry Seasons

The knowledge of the diet of aquatic insects is important to assess the use of resources and overlap of trophic niche between species, as well as to understand their role in the food web of the freshwater ecosystems they inhabit. This is particularly necessary in tropical areas where information on this topic is scarce. The aim of the present work is to describe the feeding habits of the species Anacroneuria marta Zúñiga and Stark, 2002 and Anacroneuria caraca Stark, 1995 in the middle section of the Gaira River (Sierra Nevada de Santa Marta, Colombia). We performed three samplings during the rainy and dry seasons in the two main different microhabitats of the reach (leaf packs and gravel) in 2014. The diet of a total of 87 and 90 individuals of A. caraca and A. marta, respectively, was studied. With this information, niche breadth for each species and niche overlap between them in terms of trophic resources were calculated. The main trophic resource for both species in the dry and rainy season was the animal matter. In the dry season, FPOM was also important in the diet of A. caraca, and A. marta ingested a great quantity of CPOM in the rainy season. Larvae of Trichoptera, were the most ingested prey in both species, followed by Chironomidae, Coleoptera Hydrophilidae, and Ephemeroptera. No differences in diet between both species were detected, so this could favor the niche overlap in terms of trophic resources and could lead to competition between them. The possible ecological scenarios are discussed.

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