FIRST REPORT OF Begomovirus INFECTION ON PAPAYA  IN BENGKULU, INDONESIA

A field survey was conducted during 2019, we found a severe systemic yellow mosaic, striped green mosaic on leaves petiole, green spots on the fruit of papaya, leaf malformation, and stunting symptoms on three papaya cultivation area in Rejang Lebong, Kepahiang, Bengkulu Tengah, and Seluma, Bengkulu Province, Indonesia. A begomo-like virus was inferred to be the possible cause of the virus-disease-like symptoms. The study aimed to identify the causal of those typical symptoms on papaya. PCR using universal primer for transcriptional activator protein (TrAp) and replication-associated protein (Rep) gene of Begomovirus successfully amplified the DNA fragments of 900 bp in all 10 detected samples, except for samples with leaf malformation and stunting symptoms. It is indicating that those typical symptoms on papaya is associated with Begomovirus infection, while the causal of leaf malformation and stunting is unknown yet. This work is the first report of Begomovirus infected papaya in Indonesia. Severe disease incidence caused by this pathogen was observed on papaya plants in Bengkulu Province that was in the range of 42–100%. This finding is a precious information to be used for identification, and characterization the species of the virus, determining control strategies against the disease.

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FIRST REPORT OF Begomovirus INFECTION ON PAPAYA IN BENGKULU, INDONESIA

JURNAL HAMA DAN PENYAKIT TUMBUHAN TROPIKA ◽

10.23960/jhptt.12149-55 ◽

2021 ◽

Vol 21 (1) ◽

pp. 49-55

Author(s):

Mimi Sutrawati ◽

Parwito Parwito ◽

Priyatiningsih ◽

Agustin Zarkani ◽

Sipriyadi ◽

...

Keyword(s):

Field Survey ◽

Virus Disease ◽

Control Strategies ◽

Dna Fragments ◽

Universal Primer ◽

First Report ◽

Activator Protein ◽

Begomovirus Infection ◽

Possible Cause ◽

Identification And Characterization

First report of Begomovirus infection on papaya in Bengkulu, Indonesia. A field survey was conducted during 2019, wefound a severe systemic yellow mosaic, striped green mosaic on leaves petiole, green spots on the fruit of papaya, leafmalformation, and stunting symptoms on three papaya cultivation area in Rejang Lebong, Kepahiang, Bengkulu Tengah, andSeluma, Bengkulu Province, Indonesia. A begomo-like virus was inferred to be the possible cause of the virus-disease-likesymptoms. The study aimed to identify the causal of those typical symptoms on papaya. PCR using universal primer fortranscriptional activator protein (TrAp) and replication-associated protein (Rep) gene of Begomovirus successfully amplifiedthe DNA fragments of 900 bp in all 10 detected samples, except for samples with leaf malformation and stunting symptoms. Itis indicating that those typical symptoms on papaya is associated with Begomovirus infection, while the causal of leafmalformation and stunting is unknown yet. This work is the first report of Begomovirus infected papaya in Indonesia. Severedisease incidence caused by this pathogen was observed on papaya plants in Bengkulu Province that was in the range of 42–100%. This finding is a precious information to be used for identification, and characterization the species of the virus,determining control strategies against the disease.

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First report of twig blight of ban tulsi (Croton bonplandianus Bail.) caused by Choanephora cucurbitarum (Berk. & Ravenel) Thaxt. in India

Journal of Plant Protection Research ◽

10.1515/jppr-2017-0049 ◽

2018 ◽

Vol 0 (0) ◽

Author(s):

Siddhartha Das ◽

Subrata Dutta ◽

Sujit Kumar Ray

Keyword(s):

Present Report ◽

Monsoon Season ◽

Disease Incidence ◽

Severe Disease ◽

First Report ◽

Rdna Its ◽

Rdna Its Sequences ◽

Twig Blight ◽

Choanephora Cucurbitarum ◽

Blight Disease

Abstract In August 2015, twig blight disease of ban tulsi (Croton bonplandianus Bail.) caused by Choanephora cucurbitarum (Berk. & Ravenel) Thaxt. was observed for the first time, in the Gangetic alluvial region of West Bengal, India. A severe disease incidence (40-50%) showed twig blight symptoms starting with shoot apical meristem (SAM), leaf, and blossom blight symptoms. Typical symptoms were characterized by over-projecting black pin head like emerging sporangiola which formed mycelial cushion on the infected surface. The present report describes the identification of the causal pathogen as C. cucurbitarum based on its morphology and the internal transcribed spacer of its ribosomal DNA (rDNA - ITS) sequences with 100% identity of NCBI-GenBank published Choanephora database. Optimum temperatures, 28-30°C, coupled with high relative humidity (80-90%) during the monsoon season enhances the disease’s progress. To the best of our knowledge this is the first report of twig blight of C. bonplandianus, caused by C. cucurbitarum, in India as well as globally.

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First Report of Anemone Plants Infected by Ranunculus white mottle virus

Plant Disease ◽

10.1094/pdis.2000.84.9.1046b ◽

2000 ◽

Vol 84 (9) ◽

pp. 1046-1046 ◽

Cited By ~ 2

Author(s):

A. M. Vaira ◽

M. Vecchiati ◽

V. Lisa ◽

R. G. Milne

Keyword(s):

Mixed Infection ◽

Viral Infections ◽

Disease Incidence ◽

Severe Disease ◽

Mottle Virus ◽

Tobacco Necrosis Virus ◽

First Report ◽

Clear Cut ◽

Molecular Tests ◽

Field Samples

Ranunculus white mottle virus (RWMV) (1), genus Ophiovirus, has been reported in crops of several cultivars of commercial ranunculus (Ranunculus asiaticus hybrids) during the 1990s in Liguria in Northwest Italy. Symptoms associated with RWMV in ranunculus are not clear-cut owing to the presence of mixed viral infections. During autumn 1999, a severe disease in commercial crops of anemone (Anemone coronaria) was noted in the same area. Plants appeared stunted with young leaves showing curling, deformation, and necrotic spotting. Disease incidence in some fields reached 40 to 50%. DAS- and TAS-enzyme-linked immunosorbent assays (ELISAs) for presence of RWMV and for the viruses most frequently infecting anemone in Italy were run on 24 field samples. Seven proved to be infected by RWMV in mixed infection with Cucumber mosaic virus subgroup II or with Tobacco necrosis virus. Ophiovirus-like particles were detected by negative staining and electron microscopy from sap extracts of field plants that were RWMV-positive by ELISA. Sap from these plants was also mechanically inoculated to indicator plants. Total RNAs were extracted from RWMV-infected field samples and from inoculated Nicotiana benthamiana and N. clevelandii and used in molecular tests. A DIG-DNA probe targeting the 1.8-kb RNA2 of RWMV was used in Northern blots and dot blots of total RNAs, confirming the infection in field samples and multiplication of the virus in test plants, unfortunately still in mixed infection. At present, it is difficult to evaluate RWMV symptomatology in anemone, but the presence of this virus in mixed infection seems to produce serious effects. This is the first report of RWMV in anemone. Reference: (1) A. M. Vaira et al. Arch. Virol. 142:2131, 1997.

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First Report of Golovinomyces orontii Causing Hydrangea macrophylla Powdery Mildew in Qinghai-Tibet Plateau, China

Plant Disease ◽

10.1094/pdis-11-20-2359-pdn ◽

2021 ◽

Author(s):

Taijun Fang ◽

Wenjun Shang ◽

luchao bai ◽

Nuyi Ya ◽

Jiezhuoma Duo ◽

...

Keyword(s):

Powdery Mildew ◽

Disease Incidence ◽

Tibet Plateau ◽

Single Spore ◽

Universal Primer ◽

Bootstrap Analysis ◽

First Report ◽

Golovinomyces Orontii ◽

Hydrangea Macrophylla ◽

Qinghai Tibet Plateau

Hydrangea macrophylla (Thunb.) Ser. (Hydrangeaceae) is the most popular hydrangea species grown in home gardens and landscapes in China. Plants of H. macrophylla with symptoms of powdery mildew were found in a commercial wholesale nursery in Huzhu, Haidong (36°49'11.87" N, 101°57′03.36″E, alt. 2490 m), in May 2020, with disease incidence reaching 80%. Symptoms included yellowing and necrosis of leaves. Upon microscopic observation, masses of conidia and mycelium were observed covering the symptomatic tissues. Fungal isolates displayed nipple-shaped hyphal appressoria, often poorly developed, conidiophores erect, arising laterally or from the upper surface of hyphal mother cells, and positioned almost centrally or towards one end of the cells, up to about 160 μm long (n = 30), with foot cells straight or flexuous, 32 to 86 × 8 to 13 μm (n = 50), followed by one to three shorter cells about 11 to 24 × 10 to 15 μm (n = 50), forming catenescent conidia in usually predominantly chains, conidia doliiform to limoniform, hyaline, 24 to 35 × 13 to 25μm (n = 50). Conidial germination was of the Euoidium type. Chasmothecia were not observed. To confirm fungal classification, single spores were isolated and cultured on detached leaf bioassay following the protocol described in Farinas et al. (2019). Total DNA was extracted directly from single-spore cultures using a Chelex extraction method (Walsh et al. 1991). The rDNA internal transcribed spacer (ITS) regions were amplified by polymerase chain reaction (PCR) utilizing the universal primer pairs ITS1/ITS4 (White et al. 1990). The sequences (726-727 bp) were deposited in GenBank (accessions no. MT568633, MT757924 and MT757925). The ITS sequences showed 99.9-100% identity with a sequence of Golovinomyces orontii reported on Papaver rhoeas (AB769466) in Switzerland. Based on the ITS rDNA phylogenetic tree, the sequences retrieved from the specimen clustered within a strongly supported clade with G. orontii (AB769466), confirming the identity of the pathogen (Takamatsu 2013). Cladistic trees were constructed using the neighbor-joining method with the Kimura 2-parameter substitution model in MEGA 6.0. Branch robustness was assessed via bootstrap analysis with 1,000 replicates. To confirm pathogenicity, eight H. macrophylla plants were sprayed until run-off with a suspension containing 1 × 105 conidia/ml. Four plants were used for fulfilling Koch’s postulates and four plants were used as mock-inoculated controls sprayed only with sterile distilled water. Inoculated and non-inoculated plants were covered with plastic bags separately and maintained overnight in a greenhouse at 25 ± 2°C and 50 to 60% relative humidity. Typical powdery mildew colonies developed on inoculated plants 10 to 15 days after inoculation, which were morphologically identical to those originally observed on the diseased plats, whereas the control plants remained symptomless. To our knowledge, this is the first report of powdery mildew caused by G. orontii on H. macrophylla in Qinghai-Tibet Plateau, China (Braun and Cook 2012).

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Defense and counter-defense in rice–virus interactions

Phytopathology Research ◽

10.1186/s42483-019-0041-7 ◽

2019 ◽

Vol 1 (1) ◽

Author(s):

Jiaqi Qin ◽

Ci Wang ◽

Leqi Wang ◽

Shanshan Zhao ◽

Jianguo Wu

Keyword(s):

Virus Disease ◽

Control Strategies ◽

Severe Disease ◽

Host Responses ◽

Rice Varieties ◽

Antiviral Responses ◽

Significant Yield ◽

Vector Borne ◽

Virus Interactions ◽

Resistance To Viruses

AbstractRice viruses, known as “rice killer”, are vector-borne pathogens that cause severe disease and significant yield loss in rice production around the world. Rice virus disease is characterized by uncontrolled virus replication and the activation of host responses that contribute to pathogenesis. Underlying these phenomena is the potent suppression of rice antiviral responses, particularly the RNA silencing pathway and plant hormone pathways, which play vital roles in antiviral immunity. Classical rice virus disease control strategies include chemotherapeutics and use of disease resistance rice varieties. Here, we summarize recent advances in understanding the mechanisms behind the immune evasion and rice viral pathogenesis. Based on these mechanistic insights, we discuss how to combine different strategies for maintaining the effectiveness of rice resistance to viruses, and propose theoretical basis for the next generation of virus-resistant rice plants.

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First Report of Rhizome Rot Caused by Pectobacterium brasiliense on Ginger in China

Plant Disease ◽

10.1094/pdis-10-21-2324-pdn ◽

2022 ◽

Author(s):

Jinhui Wang ◽

Yuxiang Lu ◽

Wanxin Han ◽

Lijun Fu ◽

Xiaoqing Han ◽

...

Keyword(s):

16S Rdna ◽

Disease Incidence ◽

Housekeeping Genes ◽

Zingiber Officinale ◽

Soft Rot ◽

Management Options ◽

Universal Primer ◽

First Report ◽

Wide Range ◽

Rhizome Rot

In August 2020, ginger (Zingiber officinale) rhizomes (cv. Mianjiang) showing soft rot symptoms were observed in a field in Tayang Village, Fengrun District, Tangshan, Hebei Province (North China). The disease incidence in that field (15 ha in size) was more than 20%. Symptomatic rhizomes (brown and water-soaked) were surface-sterilized in 75% ethanol for 60 sec and then three successive rinses with sterile distilled water. Rhizomes were cut into pieces ca. 0.5 cm in length, and then were soaked in 500 µl 0.9% saline for 20 min. Aliquots (20 μl) of three tenfold dilutions of the tissue specimen soaking solution were plated onto the lysogeny broth (LB) medium. And LB plates were incubated at 28°C for 24 h. Five single colonies were picked from each LB plate and restreaked three times for purity. Endophytic bacteria were also isolated from asymptomatic rhizomes as control. The bacterial gDNA was extracted using the EasyPure Bacteria Genomic DNA Kit (TransGen Biotech, Beijing, China). The 16S rDNA region was amplified by PCR using the universal primer pair 27F/1492R (Weisburg et al. 1991) and sequenced. The results of BLASTN against NCBI nr of the 16S rDNA amplicons suggested that the most isolates (8/10) obtained from the rotten rhizomes belonged to the genus Pectobacterium, and few isolates (2/10) were Enterobacter spp.. Only Enterobacter spp. were isolated from asymptomatic rhizomes. Since all Pectobacterium isolates showed identical 16S rDNA sequence, thus, only two isolates were selected for further analysis. Pectobacterium isolates TS20HJ1 and TS20HJ2 (MZ853520, MZ853521) represent isolates from two plant individuals. To determine the species of the rhizome rot Pectobacterium isolates, multi-locus sequence analysis (MLSA) was performed with five housekeeping genes acnA, icdA, mdh, proA and rpoS (MZ994717-MZ994726) (Ma et al. 2007; Waleron et al. 2008), and a phylogenetic tree was reconstructed using RAxML v8.2.12 (github.com/stamatak/standard-RAxML). No sequence variation was observed at any MLSA locus between the two isolates. The result of phylogenetic analysis showed that the ginger rhizome isolates clustered with P. brasiliense type strain IBSBF1692T (Duarte et al. 2004; Nabhan et al. 2012). Ginger seedlings (cv. Mianjiang) were inoculated with the isolate TS20HJ1 by injecting 10 µl of bacterial suspensions (108 CFU·mL-1) into the rhizomes, or injected with 10 µl of 0.9% saline solution as control. The seedlings were grown at 28°C and 50% relative humidity. Ten days after inoculation, only the bacteria-inoculated rhizomes showed diseased symptoms resembling to those observed in the field. Bacterial colonies were obtained from the infected rhizomes and were identified with MLSA gene sequencing, fulfilling Koch’s postulates. P. brasiliense causes soft rot of a wide range of economically important crops (Oulghazi et al. 2021). To our knowledge, this is the first report of P. brasiliense causing rhizome rot of ginger in China. The rhizome rot caused 20-25% yield loss on average in Tangshan region in 2020, which poses a significant threat to the local ginger farming. Further research on epidemiology and disease management options is needed.

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First Report of Banana Bunchy Top Disease on Banana in Bengkulu.

AGRITROPICA Journal of Agricultural Sciences ◽

10.31186/j.agritropica.3.2.82-87 ◽

2020 ◽

Vol 3 (2) ◽

pp. 82-87

Author(s):

Mimi Sutrawati ◽

Sempurna Ginting

Keyword(s):

Virus Disease ◽

Control Strategies ◽

Disease Incidence ◽

Economic Value ◽

Virus Detection ◽

Disease Diagnosis ◽

Banana Bunchy Top Virus ◽

Banana Production ◽

Generative Phase ◽

Banana Crops

Banana is a horticulture crop that has economic value and is widely cultivated in tropical countries. Banana production in Bengkulu province reached 259,748 quintals, then durian (110,387 quintals), tangerines (94,396 quintals) (BPS 2015). Banana bunchy top disease caused by Banana bunchy top virus (BBTV) infection is considered the most crucial virus disease affecting yield losses of a banana plantation in Asia, Africa, and the South Pacific. However, the incidence and molecular characters of BBTV has never been reported in Bengkulu. This research aims to characterize symptom variations, disease incidence, and disease severity of BBTV infection in Bengkulu and virus detection using molecular methods by polymerase chain reaction (PCR). Disease incidence of BBTV was measured based on field symptoms. The disease survey was conducted in Bengkulu city, Bengkulu Utara district, and Rejang Lebong district. The study showed that the incidence of BBTV in Bengkulu City, Bengkulu Utara, and Rejang Lebong ranged from 0% to 100%. The most common symptoms observed in the field involved vein clearing, upturned leaf, chlorotic, and ragged margins, reducing petiole length, distance, lamina width, and stunting. Banana crops that are infected with BBTV in the vegetative phase will not produce fruit. In contrast, viral infection in the generative phase causes the formation of stunted fruit that is not suitable for harvesting. Thus, the potential loss of yield due to stunted disease can reach 100%. This study's results are the first reports of BBTV infection in banana crops in Bengkulu. Disease diagnosis will form the basis of disease control strategies in banana crops.

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First Report of Group 16SrXII Phytoplasma Associated with Papaya Yellows in Taiwan

Plant Disease ◽

10.1094/pdis-05-11-0407 ◽

2011 ◽

Vol 95 (12) ◽

pp. 1581-1581 ◽

Cited By ~ 3

Author(s):

H. J. Bau ◽

S. C. Hung ◽

W. C. Chang ◽

Y. K. Chen

Keyword(s):

16S Rrna ◽

16S Rrna Gene ◽

Viral Infections ◽

Restriction Analysis ◽

Disease Incidence ◽

Rrna Gene ◽

Polymorphism Analysis ◽

Universal Primer ◽

First Report ◽

Sequence Identity

Phytoplasmas have been reported to cause various disorders in papaya (Carica papaya L.), including dieback, mosaic, and yellow crinkle in Australia, Nivun Haamir dieback in Israel, and bunchy top-like disease in Cuba (1). Papaya is an economically important crop in Taiwan, and therefore, is monitored for viral infections. In 2005, papaya plants showing chlorosis, yellows and shriveling of leaves, dieback and lateral growth of branches, bending of apical branches, latexosis of fruits, and brown necrosis in phloem tissues were observed in southern Taiwan. Examination by an electron microscope revealed the presence of pleomorphic phytoplasma cells in sieve tubes of the phloem of petioles and leaf veins of diseased plants. Total DNA was extracted individually from at least three diseased plants at each location with a commercial DNA preparation kit (Axygen Scientific, Union City, CA) and used for amplification of the phytoplasma 16S rRNA gene in PCR with universal primer pairs P1 and Tint (3). The full-length 16S rRNA gene has been amplified and cloned. Sequence analysis revealed that the fragment was 1,581 bp long (GenBank Accession No. AJ919994) and shared 99.6% sequence identity with that of the ‘Candidatus Phytoplasma solani’ reference strain (GenBank Accession No. AF248959). A virtual restriction fragment length polymorphism analysis of the 16S rDNA sequence amplified from the R16F2n/R16R2 primers (2) was performed with iPhyClassifier (4) and pDRAW32. In silico restriction analysis identified the studied papaya phytoplasma as a subgroup 16SrXII-A strain. The sequence had 97 to 98% sequence identity with papaya phytoplasmas of the 16SrXII group in Australia (GenBank Accession No. Y10095), Israel (GenBank Accession No. AY903951), and Cuba (GenBank Accession No. AY725234). The disease incidence was 30 to 35% during the 2006 to 2010 growing seasons, and field surveys indicated that the disease has spread to central Taiwan with sporadic occurrence in recent years. To our knowledge, this is the first report of phytoplasma associated with papaya yellows in Taiwan. References: (1) Y. Arocha et al. Int. J. Syst. Evol. Microbiol. 55:2451, 2005. (2) I. M. Lee et al. Int. J. Syst. Bacteriol. 48:1153, 1998. (3) C. D. Smart et al. Appl. Environ. Microbiol. 62:2988, 1996. (4) Y. Zhao et al. Int. J. Syst. Evol. Microbiol. 59:2582, 2009.

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Identification and Characterization of Inorganic Pyrophosphatase and PAP Phosphatase from Thermococcus onnurineus NA1

Journal of Bacteriology ◽

10.1128/jb.01699-08 ◽

2009 ◽

Vol 191 (10) ◽

pp. 3415-3419 ◽

Cited By ~ 4

Author(s):

Hyun Sook Lee ◽

Yun Jae Kim ◽

Jung-Hyun Lee ◽

Sung Gyun Kang

Keyword(s):

Gene Clusters ◽

Inorganic Pyrophosphatase ◽

Thermococcus Onnurineus Na1 ◽

First Report ◽

Activation System ◽

Sulfate Activation ◽

Pyrococcus Abyssi ◽

Identification And Characterization ◽

Hypothetical Genes

ABSTRACT Two hypothetical genes were functionally verified to be a pyrophosphatase and a PAP phosphatase in Thermococcus onnurineus NA1. This is the first report of the pyrophosphatases and the PAP phosphatases being organized in the gene clusters of the sulfate activation system only in T. onnurineus NA1 and “Pyrococcus abyssi.”

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First Report of Echinococcus ortleppi in Free-Living Wild Boar (Sus scrofa) from Portugal

Microorganisms ◽

10.3390/microorganisms9061256 ◽

2021 ◽

Vol 9 (6) ◽

pp. 1256

Author(s):

Teresa Letra Mateus ◽

Maria João Gargaté ◽

Anabela Vilares ◽

Idalina Ferreira ◽

Manuela Rodrigues ◽

...

Keyword(s):

Wild Boar ◽

Internal Transcribed Spacer ◽

Sus Scrofa ◽

One Health ◽

Control Strategies ◽

Free Living ◽

First Report ◽

Wildlife Reservoirs ◽

First Time ◽

Echinococcus Granulosus Sensu Lato

Cystic echinococcosis (CE) is a zoonosis that is prevalent worldwide. It is considered endemic in Portugal but few studies have been performed on Echinococcus granulosus sensu lato and their hosts. In this study, CE cysts are reported for the first time in a free-living wild boar (Sus scrofa) in Portugal. The presence of the metacestodes in the liver of the wild boar was identified by morphological features, microscopic examination and molecular analysis. The sequencing of part of the DNA nuclear ribosomal internal transcribed spacer-1 (ITS-1) region revealed a G5 genotype that presently corresponds to Echinococcus ortleppi. This is the first report of E. ortleppi in Portugal and to the best of the authors’ knowledge, in Europe. These results suggest that wild boar may be a host of CE, namely, crossing the livestock–wildlife interface, which has important public health implications. Wildlife reservoirs must be taken into account as CE hosts and surveillance of game as well as health education for hunters should be implemented using a One Health approach, with implementation of feasible and tailor-made control strategies, namely, proper elimination of byproducts in the field.

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