scholarly journals Analysis of Growth Performance Data in Sheep using Linear Mixed Model

2019 ◽  
Vol 2 (4) ◽  
Author(s):  
Mekonnen Tilahun
Keyword(s):  
Growth Performance ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Performance Data

249 Increasing Structural Fiber Improves Growth Performance of Nursery Pigs

2021 ◽  
Vol 99 (Supplement_1) ◽  
pp. 93-93
Author(s):  
Sara Ebarb ◽  
Sabrina May ◽  
Mark D Newcomb
Keyword(s):  
Growth Performance ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Two Phase ◽  
Nursery Pigs ◽  
High Fiber ◽  
Rice Hulls ◽  
Fiber Treatment ◽  
Wheat Middlings

Abstract Fiber ingredients in swine diets have various components that affect the intestinal tract distinctively. The objective of this study was to determine the effect of structural fiber sources on growth performance of nursery pigs. A total of 1,760 weanling pigs (initial BW = 6.12 ± 0.3 kg, 16 reps/trt, 22 pigs/pen) were used in a study with 5 dietary treatments: 1) Complex nursery diet with no additional fiber (CON); 2) CON + 2% rice hulls; 3) CON + 4% rice hulls; 4) CON + 6% wheat middlings; 5) CON + 12% wheat middlings. Fiber ingredients were added at the expense of corn and some processed soybean meal to maintain similar dietary protein levels. Using an in vitro fermentation estimation of fermentation for rice hulls and wheat middlings, diets were constructed to add similar levels of structural (non-fermentable NDF) fiber between low and high additions of rice hulls and wheat middlings. Pens across two barns were randomly allotted independent of one another and within a location block to one of the five treatments on d 0 of a two-phase study (d 0–11 and d 11–20.5 post-weaning). Data were analyzed by general linear model in R. Mortality and removal data were analyzed as a generalized linear mixed model with a binomial distribution. Contrasts tested the effect of additional fiber (CON vs treatments 2–5), effect of medium vs high fiber (treatment 2/4 vs 3/5), effect of source of fiber (treatment 2/3 vs 4/5), and the interaction of level and source of fiber. Overall (Table 1), additional fiber resulted in increased ADFI (P < 0.05) and tended to increase ADG (P < 0.10). Probability of mortality and removal was reduced (P < 0.05) when additional fiber was included. In summary, increasing the level of structural fiber improved performance and livability of nursery pigs.

scholarly journals 128 Effects of a Bacillus-based probiotic and prebiotics on nursery pig performance, fecal consistency, and fecal microflora

2019 ◽  
Vol 97 (Supplement_2) ◽  
pp. 75-76
Author(s):  
Mariana Boscato Menegat ◽  
Michaela B Braun ◽  
Joel M DeRouchey ◽  
Jason C Woodworth ◽  
Jim Bryte ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Growth Performance ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Experimental Unit ◽  
Bacillus Sp ◽  
Nursery Pigs ◽  
Fecal Microflora ◽  
Microbial Analysis ◽  
Diet Control

Abstract This study evaluated the progeny of sows fed a control or probiotic diet with Bacillus subtilis C-3102 (Calsporin®, Calpis Co. Ltd., Tokyo, Japan) at 500,000 and 1,000,000 CFU/g diet in gestation and lactation, respectively. A total of 358 weaned pigs (DNA 241 × 600) were used in a 42-d trial with 4–5 pigs/pen and 18–19 pens/treatment. Pens were allotted to treatments in a completely randomized design based on BW at weaning. Treatments were a 2×2 factorial with main effects of sow diet (control vs. probiotic) and nursery diet (control vs. probiotic). In the nursery probiotic diet, a product based on probiotic Bacillus subtilis C-3102 at 500,000 CFU/g diet and prebiotics β-glucans and mannan oligosaccharides was included at 0.05% (BacPack ABF™, Quality Technology International, Inc., Elgin, IL). Diets were corn-soybean meal-based. Growth performance and fecal consistency on a 1-to-5 scale were evaluated weekly. Fecal samples were collected for microbial analysis by culture method and bacterial quantification of Bacillus subtilis C-3102, total Bacillus sp., Lactobacillus sp., Clostridium perfringens, Salmonella spp., Enterococcus sp., Enterobacteriaceae, total aerobes, and total anaerobes. Data were analyzed using a linear mixed model (PROC GLIMMIX, SAS®) with pen as experimental unit. There was no evidence for effect of sow diet, nursery diet, or interactions (P > 0.10) on overall nursery growth performance and fecal consistency. However, growth performance from d 21 to 42 and final BW were greater (P < 0.05) in progeny of control-fed sows compared to probiotic-fed sows. Microbial analysis revealed an increase (P < 0.01) in Bacillus subtilis C-3102 and, consequently, total Bacillus sp. in fecal microflora of probiotic-fed pigs. In conclusion, probiotic inclusion to sow diets lowered growth performance of the progeny in late nursery. The probiotic diet provided to sows or nursery pigs did not influence fecal consistency, but altered the fecal microbial population in nursery pigs by increasing total Bacillus sp.

scholarly journals PSVII-9 Effects of a multi-species direct-fed microbial on growth performance and carcass characteristics of grow-finish pigs

2019 ◽  
Vol 97 (Supplement_2) ◽  
pp. 216-216
Author(s):  
Mariana Boscato Menegat ◽  
Joel M DeRouchey ◽  
Jason C Woodworth ◽  
Mike D Tokach ◽  
Steve S Dritz ◽  
...  
Keyword(s):  
Growth Performance ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Block Design ◽  
Control Diet ◽  
Random Effect ◽  
Carcass Characteristics ◽  
Experimental Unit ◽  
Feeding Duration ◽  
Corn Distillers

Abstract This study was conducted to determine the effects of a multi-species direct-fed microbial (DFM) product based on lactic acid bacteria and Bacillus subtilis on growth performance and carcass characteristics of grow-finish pigs. A total of 1,188 pigs (PIC 359 × 1050; initially 25.8 kg BW) were used in a 121-d growth trial with 27 pigs/pen and 22 pens/treatment. Pigs were allotted to treatments based on initial BW in a randomized complete block design. Treatments included a control diet and the control diet with added DFM (BiOWiSH Technologies Inc., Cincinnati, OH) included at 0.055% of the diet at the expense of corn. Diets were based on corn, distillers dried grains with solubles, and soybean meal and fed in four dietary phases. Data were analyzed using a linear mixed model (PROC GLIMMIX, SAS®) with treatment as fixed effect, block as random effect, and pen as experimental unit. Overall (d 0 to 121), pigs fed the control diet had greater ADG (P < 0.05) and final BW (P < 0.001) compared to pigs fed the DFM diet (Table 1). There was no evidence for differences (P > 0.05) in ADFI or G:F between treatments. The difference in final BW resulted in heavier (P < 0.05) HCW in control pigs compared to DFM pigs, but no evidence for differences (P > 0.05) was observed in carcass yield, backfat, loin depth, and percentage lean between treatments. In conclusion, the inclusion of this multi-species DFM in growing-finishing diets reduced ADG in this commercial study. This response could be related to inclusion rate, feeding duration, or other factors not identified in this study, warranting further research to characterize the effects on pig performance.

scholarly journals PSVIII-10 Effects of enzyme supplementation in corn distiller’s dried grains with solubles (DDGS) diets on growth performance in broilers: a meta-analysis

2020 ◽  
Vol 98 (Supplement_3) ◽  
pp. 211-211
Author(s):  
Jae-Cheol Jang ◽  
Zhikai Zeng ◽  
Pedro E Urriola ◽  
Gerald C Shurson
Keyword(s):  
Growth Performance ◽  
Fixed Effects ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Meta Analysis ◽  
Growth Responses ◽  
Exogenous Enzymes ◽  
The Mean ◽  
Enzyme Supplementation ◽  
Mean Differences

Abstract The objective of this study was to conduct a meta-analysis to quantitatively summarize the growth responses of broilers fed cDDGS and the efficacy of various types of dietary enzyme supplementation. A total of 12 publications with 69 observations were included in the database. Individual observations were analyzed using a multivariable linear mixed model. The mean differences (MD) of BWG, FI, and gain efficiency (G/F) were calculated by subtracting either the enzyme response in corn-soybean meal (CSB) or CSB+cDDGS based diets to the control, and was expressed as a percentage (MD = (enzyme – control)/control ×100%). A type of exogenous enzymes (xylanase; protease; carbohydrases; cocktail = proteases + carbohydrases), and feeding phase (starter = d 0 to d 21; finisher = d 21 to d 42 or 49; overall = d 0 to d 42 or more) were included as fixed effects. Dietary enzyme inclusion showed significant improvement on BWG (3.19%, P &lt; 0.01) and G/F (5.69%, P &lt; 0.01) in broilers fed cDDGS diet. However, no significant enzyme responses were observed in broilers fed CSB diet on growth performance. Broilers fed cDDGS diet had increased (P &lt; 0.01) BWG with the addition of protease (3.32 %) and cocktail (3.27 %), whereas addition of xylanased improved (P &lt; 0.01) G/F by (3.56 %) and carbohydrases (1.90 %). Broilers fed cDDGS diet with enzyme supplementation showed greater improvement in BWG (3.71 %, P &lt; 0.01) and G/F (3.78 %, P &lt; 0.01) at finisher phase compared with starter phase. Likewise, Broilers fed CSB diet with enzyme supplementation increased BWG (9.40 %, P &lt; 0.01) and G/F (3.11 %, P &lt; 0.01) at finisher phase. In conclusion, supplementation of xylanase and carbohydrases in cDDGS diet improved G/F, and the enzyme response can be maximized when fed during the finisher phase diet compared with the starter phase diet.

scholarly journals Adverse effects on growth performance and bone development in nursery pigs fed diets marginally deficient in phosphorus with increasing calcium to available phosphorus ratios

2020 ◽  
Vol 98 (10) ◽  
Author(s):  
Spenser L Becker ◽  
Stacie A Gould ◽  
Amy L Petry ◽  
Leah M Kellesvig ◽  
John F Patience
Keyword(s):  
Growth Performance ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Bone Development ◽  
Average Daily Gain ◽  
Experimental Period ◽  
Feed Ratio ◽  
Available Phosphorus ◽  
Nursery Pigs ◽  
The Impact

Abstract The objective of this experiment was to evaluate the growth performance and bone mineral content (BMC) of nursery pigs in response to increasing total calcium (Ca) to available phosphorus (aP) ratios in diets containing phytase (250 FTU/kg; Natuphos E, BASF, Florham Park, NJ). A total of 480 nursery pigs (body weight (BW) = 5.7 ± 0.6 kg) with 10 pigs per pen and 7 pens per treatment (6 pens fed 2.75:1 diet) were allotted to seven treatments consisting of increasing ratios of calcium to available phosphorus (Ca:aP): 1.25, 1.50, 1.75, 2.00, 2.25, 2.50, and 2.75. From day −7 to 0, pigs were fed a common diet. They were then fed the treatment diets during two experimental phases from day 1 to 14 and 15 to 28, respectively. Available P was formulated to 0.33% and 0.27% (approximately 90% of requirement) in dietary phases 1 and 2, respectively. BW, average daily gain (ADG), average daily feed intake (ADFI), and gain-to-feed ratio (G:F) were determined. BMC of the femur was measured on day 28 on one pig per pen using dual x-ray absorptiometry. Data were analyzed as a linear mixed model using PROC MIXED (SAS, 9.3). Orthogonal polynomial contrasts were used to determine the linear and quadratic effects of increasing the Ca:aP. Over the 28-d experimental period, increasing Ca:aP resulted in a linear decrease in ADG (353, 338, 328, 304, 317, 291, and 280 g/d; P &lt; 0.01), ADFI (539, 528, 528, 500, 533, 512, and 489 g/d; P &lt; 0.05), and G:F (0.68, 0.66, 0.64, 0.62, 0.61, 0.59, and 0.58; P &lt; 0.01). Increasing Ca:aP also resulted in decreased BW on days 14 and 28 (P &lt; 0.01). The BMC of the femur decreased with increasing Ca:aP (6.2, 6.3, 5.7, 5.9, 5.5, 5.6, and 5.3 g; P &lt; 0.05). Regression analysis explained the impact of Ca:aP as follows on ADG (ADG [g/d] = 339 − 36x; r2 = 0.81), G:F (G:F = 0.61 – 0.03x; r2 = 0.72), and BMC (BMC [g] = 6.4 – 0.27x; r2 = 0.43), where x is the Ca:aP. In conclusion, all outcomes indicated that any level of calcium above the minimum used in this experiment impaired growth performance and skeletal development. Further research using even lower levels of dietary Ca is warranted.

scholarly journals PSIX-21 Effect of reduced digestible protein and amino acid supply imposed in the grower and finisher period or solely in the finisher period on growth performance and feeding behaviour

2019 ◽  
Vol 97 (Supplement_3) ◽  
pp. 348-349
Author(s):  
Giuseppe Bee ◽  
Guy Maikoff
Keyword(s):  
Growth Performance ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Essential Amino Acids ◽  
Performance Study ◽  
Large White ◽  
Digestible Protein ◽  
The Individual ◽  
Dietary Treatments ◽  
Behaviour Data

Abstract Above 65 kg empty BW, protein deposition is greater in pigs fed protein-restricted compared to standard diets. It is unclear whether the greater CP deposition rate in the finisher period results from the restricted CP supply in the grower phase. To elucidate this, a growth performance study (22.1–110.0 kg BW) was performed with 48 Large-White pigs. They were assigned within litter to 3 dietary treatments: C, LP-F, LP-GF. The grower-finisher diets of treatment C were formulated based on the Swiss feeding recommendations whereas those for the LP-GF treatment contained 20% lower digestible CP and essential amino acids levels than the C diets. Pigs of the LP-GF group were offered in the grower and finisher period the standard and the low CP diets, respectively. The pigs were reared in one large pen, equipped with 6 automatic feeders, which allowed measuring the individual ad-libitum feed intake per visit. The BW was determined weekly. Growth performance and feed behaviour data were analysed with a linear mixed model using treatment as fixed and litter, litter size and farrowing series as random effects. Despite total CP intake was 6 and 16% lower (P &lt; 0.05) in the LP-GF than the LP-F and C groups, respectively, overall ADG from 22.1 to 110.0 kg BW did not differ. Accordingly, gain-to-CP-intake ratio was 9 and 20% greater (P &lt; 0.05) in the LP-GF than the LP-F and C group. In the grower, but not the finisher period, LP-GF pigs visited 1.6-times more (P &lt; 0.05) the feeder and ingested 12% less (P &lt; 0.05) feed per visit than C and LP-F pigs. These data suggest that lowering the CP supply by 20% in the grower and finisher compared to solely the finisher period or not at all has no detrimental effect on growth performance and markedly improves CP utilization for growth.

scholarly journals PSVI-6 Effect of reduced dietary protein and amino acid supply imposed in the grower and finisher period or solely in the finisher period on growth traits and carcass protein deposition efficiency in pigs

2020 ◽  
Vol 98 (Supplement_3) ◽  
pp. 193-193
Author(s):  
Bee Giuseppe ◽  
Claudia Kasper ◽  
Patrick Schlegel
Keyword(s):  
Amino Acid ◽  
Growth Performance ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Growth Traits ◽  
Deposition Efficiency ◽  
Carcass Composition ◽  
Performance Study ◽  
X Ray ◽  
Protein Deposition

Abstract Above 65 kg empty BW, protein deposition is greater in pigs fed protein-restricted compared to standard diets. It is unclear whether the greater CP deposition rate in the finisher period results from the restricted CP supply in the grower period. To elucidate this question, a growth performance study (22.1-110.0 kg BW) was performed with 48 Swiss Large White pigs. They were assigned to either treatment C, LPF or LPGF. The grower-finisher diets of treatment C were formulated based on the Swiss feeding recommendations whereas those of treatment LPGF contained 20% lower digestible CP and essential amino acid levels than diets C. Pigs of the LPGF treatment were offered in the grower and finisher period the standard and the low CP diets, respectively. The pigs were reared in 1 large pen, equipped with 6 automatic feeders, which allowed measuring the individual ad-libitum feed intake per visit. The BW was determined weekly and carcass composition at slaughter was determined by dual-X-ray-absorpiometry. Growth performance and dual-X-ray-absorpiometry data were analyzed with a linear mixed model using treatment as fixed and litter, litter size and farrowing series as random effects. Despite total CP intake was 6 and 16% lower (P&lt; 0.05) in the LPGF than the LPF and C groups, respectively, overall ADG among treatments did not differ. In accordance, gain-to-CP-intake ratio was 9 and 20% greater (P&lt; 0.05) in the LPGF than the LPF and C group. The carcass protein content did not differ whereas carcass fat content was 9% greater (P&lt; 0.05) in LPGF than LPF and C pigs. Carcass protein deposition efficiency was 0.5 and 6.7%-units greater (P&lt; 0.05) in LPGF than LPF and C pigs, respectively. In conclusion, lowering the CP supply by 20% in the grower and finisher compared to solely the finisher period or not at all has no detrimental effect on growth performance, markedly improves CP utilization for carcass protein deposition but slightly increases carcass fatness.

Analyzing discontinuities in longitudinal count data: A multilevel generalized linear mixed model.

2020 ◽  
Author(s):  
James L. Peugh ◽  
Sarah J. Beal ◽  
Meghan E. McGrady ◽  
Michael D. Toland ◽  
Constance Mara
Keyword(s):  
Count Data ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Generalized Linear Mixed Model ◽  
Longitudinal Count Data

Predicting bycatch hotspots based on suitable habitat derived from fishery-independent data

2020 ◽  
Vol 641 ◽  
pp. 159-175
Author(s):  
J Runnebaum ◽  
KR Tanaka ◽  
L Guan ◽  
J Cao ◽  
L O’Brien ◽  
...  
Keyword(s):  
Habitat Suitability ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Gulf Of Maine ◽  
Homarus Americanus ◽  
Management Tool ◽  
American Lobster ◽  
Suitable Habitat ◽  
Climate Conditions ◽  
Suitability Index

Bycatch remains a global problem in managing sustainable fisheries. A critical aspect of management is understanding the timing and spatial extent of bycatch. Fisheries management often relies on observed bycatch data, which are not always available due to a lack of reporting or observer coverage. Alternatively, analyzing the overlap in suitable habitat for the target and non-target species can provide a spatial management tool to understand where bycatch interactions are likely to occur. Potential bycatch hotspots based on suitable habitat were predicted for cusk Brosme brosme incidentally caught in the Gulf of Maine American lobster Homarus americanus fishery. Data from multiple fisheries-independent surveys were combined in a delta-generalized linear mixed model to generate spatially explicit density estimates for use in an independent habitat suitability index. The habitat suitability indices for American lobster and cusk were then compared to predict potential bycatch hotspot locations. Suitable habitat for American lobster has increased between 1980 and 2013 while suitable habitat for cusk decreased throughout most of the Gulf of Maine, except for Georges Basin and the Great South Channel. The proportion of overlap in suitable habitat varied interannually but decreased slightly in the spring and remained relatively stable in the fall over the time series. As Gulf of Maine temperatures continue to increase, the interactions between American lobster and cusk are predicted to decline as cusk habitat continues to constrict. This framework can contribute to fisheries managers’ understanding of changes in habitat overlap as climate conditions continue to change and alter where bycatch interactions could occur.

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