scholarly journals Screening for Core Genes Related to Pathogenesis of Alzheimer’s Disease

2021 ◽  
Vol 9 ◽  
Author(s):  
Longxiu Yang ◽  
Yuan Qin ◽  
Chongdong Jian
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Nearest Neighbor ◽  
Core Gene ◽  
Middle Temporal Gyrus ◽  
Support Vector ◽  
Rna Expression ◽  
K Nearest Neighbor ◽  
System Disease ◽  
Core Genes

Alzheimer’s disease (AD), a nervous system disease, lacks effective therapies at present. RNA expression is the basic way to regulate life activities, and identifying related characteristics in AD patients may aid the exploration of AD pathogenesis and treatment. This study developed a classifier that could accurately classify AD patients and healthy people, and then obtained 3 core genes that may be related to the pathogenesis of AD. To this end, RNA expression data of the middle temporal gyrus of AD patients were firstly downloaded from GEO database, and the data were then normalized using limma package following a supplementation of missing data by k-Nearest Neighbor (KNN) algorithm. Afterwards, the top 500 genes of the most feature importance were obtained through Max-Relevance and Min-Redundancy (mRMR) analysis, and based on these genes, a series of AD classifiers were constructed through Support Vector Machine (SVM), Random Forest (RF), and KNN algorithms. Then, the KNN classifier with the highest Matthews correlation coefficient (MCC) value composed of 14 genes in incremental feature selection (IFS) analysis was identified as the best AD classifier. As analyzed, the 14 genes played a pivotal role in determination of AD and may be core genes associated with the pathogenesis of AD. Finally, protein-protein interaction (PPI) network and Random Walk with Restart (RWR) analysis were applied to obtain core gene-associated genes, and key pathways related to AD were further analyzed. Overall, this study contributed to a deeper understanding of AD pathogenesis and provided theoretical guidance for related research and experiments.

Deep Learning for Alzheimer’s Disease Classification using Texture Features

2019 ◽  
Vol 15 (7) ◽  
pp. 689-698 ◽  
Author(s):  
Jae-Hong So ◽  
Nuwan Madusanka ◽  
Heung-Kook Choi ◽  
Boo-Kyeong Choi ◽  
Hyeon-Gyun Park
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Deep Learning ◽  
Nearest Neighbor ◽  
Confusion Matrix ◽  
Image Data ◽  
Magnetic Resonance Images ◽  
Disease Classification ◽  
Support Vector ◽  
K Nearest Neighbor

Background: We propose a classification method for Alzheimer’s disease (AD) based on the texture of the hippocampus, which is the organ that is most affected by the onset of AD. Methods: We obtained magnetic resonance images (MRIs) of Alzheimer’s patients from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset. This dataset consists of image data for AD, mild cognitive impairment (MCI), and normal controls (NCs), classified according to the cognitive condition. In this study, the research methods included image processing, texture analyses, and deep learning. Firstly, images were acquired for texture analyses, which were then re-spaced, registered, and cropped with Gabor filters applied to the resulting image data. In the texture analyses, we applied the 3-dimensional (3D) gray-level co-occurrence (GLCM) method to evaluate the textural features of the image, and used Fisher’s coefficient to select the appropriate features for classification. In the last stage, we implemented a deep learning multi-layer perceptron (MLP) model, which we divided into three types, namely, AD-MCI, AD-NC, and MCI-NC. Results: We used this model to assess the accuracy of the proposed method. The classification accuracy of the proposed deep learning model was confirmed in the cases of AD-MCI (72.5%), ADNC (85%), and MCI-NC (75%). We also evaluated the results obtained using a confusion matrix, support vector machine (SVM), and K-nearest neighbor (KNN) classifier and analyzed the results to objectively verify our model. We obtained the highest accuracy of 85% in the AD-NC. Conclusion: The proposed model was at least 6–19% more accurate than the SVM and KNN classifiers, respectively. Hence, this study confirms the validity and superiority of the proposed method, which can be used as a diagnostic tool for early Alzheimer’s diagnosis.

scholarly journals Early detection algorithm for alzheimer’s disease using autonomous learning

2021 ◽  
Vol 10 (11) ◽  
pp. 608-621
Author(s):  
Jorge Eduardo Aguilar Obregón ◽  
Octavio José Salcedo Parra ◽  
Juan Pablo Rodríguez Miranda
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Nearest Neighbor ◽  
Complete Information ◽  
Research Problem ◽  
Detection Algorithm ◽  
Autonomous Learning ◽  
K Nearest Neighbor ◽  
Learning Techniques ◽  
Information Bank

The current document describes the approach to a research problem that aims to generate an algorithm that allows detecting the probable appearance of Alzheimer’s disease in its first phase, using autonomous learning techniques or Machine Learning, more specifically KNN (K- nearest Neighbor) with which the best result was obtained. This development will be based on a complete information bank taken from ADNI (Alz- heimer’s Disease NeuroImaging Initiative), with all the necessary parameters to direct the inves- tigation to an algorithm that is as efficient as pos- sible, since it has biological, sociodemographic and medical history data, biological specimens, neural images, etc., and in this way the early de- tection of the aforementioned disease was con- figured. A complete guide to the process will be carried out to finally obtain the KNN algorithm whose efficiency is 99%, and then discuss the obtained results. 

scholarly journals Diagnosis of Alzheimer’s Disease Severity with fMRI Images Using Robust Multitask Feature Extraction Method and Convolutional Neural Network (CNN)

2021 ◽  
Vol 2021 ◽  
pp. 1-15
Author(s):  
Morteza Amini ◽  
MirMohsen Pedram ◽  
AliReza Moradi ◽  
Mahshad Ouchani
Keyword(s):  
Neural Network ◽  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Feature Extraction ◽  
Convolutional Neural Network ◽  
Nearest Neighbor ◽  
Learning Algorithm ◽  
Early Stage ◽  
Support Vector ◽  
Feature Extraction Method

The automatic diagnosis of Alzheimer’s disease plays an important role in human health, especially in its early stage. Because it is a neurodegenerative condition, Alzheimer’s disease seems to have a long incubation period. Therefore, it is essential to analyze Alzheimer’s symptoms at different stages. In this paper, the classification is done with several methods of machine learning consisting of K -nearest neighbor (KNN), support vector machine (SVM), decision tree (DT), linear discrimination analysis (LDA), and random forest (RF). Moreover, novel convolutional neural network (CNN) architecture is presented to diagnose Alzheimer’s severity. The relationship between Alzheimer’s patients’ functional magnetic resonance imaging (fMRI) images and their scores on the MMSE is investigated to achieve the aim. The feature extraction is performed based on the robust multitask feature learning algorithm. The severity is also calculated based on the Mini-Mental State Examination score, including low, mild, moderate, and severe categories. Results show that the accuracy of the KNN, SVM, DT, LDA, RF, and presented CNN method is 77.5%, 85.8%, 91.7%, 79.5%, 85.1%, and 96.7%, respectively. Moreover, for the presented CNN architecture, the sensitivity of low, mild, moderate, and severe status of Alzheimer patients is 98.1%, 95.2%,89.0%, and 87.5%, respectively. Based on the findings, the presented CNN architecture classifier outperforms other methods and can diagnose the severity and stages of Alzheimer’s disease with maximum accuracy.

Association of AEBP1 and NRN1 RNA expression with Alzheimer’s disease and neurofibrillary tangle density in middle temporal gyrus

2019 ◽  
Vol 1719 ◽  
pp. 217-224
Author(s):  
Ignazio S. Piras ◽  
Jonida Krate ◽  
Elaine Delvaux ◽  
Jennifer Nolz ◽  
Matthew D. De Both ◽  
...  
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Neurofibrillary Tangle ◽  
Middle Temporal Gyrus ◽  
Rna Expression ◽  
Middle Temporal

scholarly journals The Integrated Voxel Analysis Method (IVAM) to Diagnose Onset of Alzheimer’s Disease and Identify Brain Regions through Structural MRI Images

2019 ◽  
Author(s):  
Matthew Hur ◽  
Armen Aghajanyan
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Nearest Neighbor ◽  
Feature Vector ◽  
Three Dimensional ◽  
Structural Mri ◽  
Brain Regions ◽  
Brain Atlas ◽  
Analysis Method ◽  
K Nearest Neighbor

AbstractMagnetic Resonance Imaging (MRI) provides three-dimensional anatomical and physiological details of the human brain. We describe the Integrated Voxel Analysis Method (IVAM) which, through machine learning, classifies MRI images of brains afflicted with early Alzheimer’s Disease (AD). This fully automatic method uses an extra trees regressor model in which the feature vector input contains the intensities of voxels, whereby the effect of AD on a single voxel can be predicted. The resulting tree predicts based on the following two steps: a K-nearest neighbor (KNN) algorithm based on Euclidean distance with the feature vector to classify whole images based on their distribution of affected voxels and a voxel-by-voxel classification by the tree of every voxel in the image. An Ising model filter follows voxel-by-voxel tree-classification to remove artifacts and to facilitate clustering of classification results which identify significant voxel clusters affected by AD. We apply this method to T1-weighted MRI images obtained from the Open Access Series of Imaging Studies (OASIS) using images belonging to normal and early AD-afflicted individuals associated with a Client Dementia Rating (CDR) which we use as the target in the supervised learning. Furthermore, statistical analysis using a pre-labeled brain atlas automatically identifies significantly affected brain regions. While achieving 90% AD classification accuracy on 198 images in the OASIS dataset, the method reveals morphological differences caused by the onset of AD.

scholarly journals A Predictive and Preventive Model for Onset of Alzheimer's Disease

2021 ◽  
Vol 9 ◽  
Author(s):  
Udit Singhania ◽  
Balakrushna Tripathy ◽  
Mohammad Kamrul Hasan ◽  
Noble C. Anumbe ◽  
Dabiah Alboaneen ◽  
...  
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Thinking Skills ◽  
Lifestyle Changes ◽  
Support Vector ◽  
Amyloid Beta Protein ◽  
K Nearest Neighbor ◽  
Decision Tree Classifier ◽  
Early Stages ◽  
Tree Classifier

Alzheimer's Disease (AD) is a neurodegenerative irreversible brain disorder that gradually wipes out the memory, thinking skills and eventually the ability to carry out day-to-day tasks. The amount of AD patients is rapidly increasing due to several lifestyle changes that affect biological functions. Detection of AD at its early stages helps in the treatment of patients. In this paper, a predictive and preventive model that uses biomarkers such as the amyloid-beta protein is proposed to detect, predict, and prevent AD onset. A Convolution Neural Network (CNN) based model is developed to predict AD at its early stages. The results obtained proved that the proposed model outperforms the traditional Machine Learning (ML) algorithms such as Logistic Regression, Support Vector Machine, Decision Tree Classifier, and K Nearest Neighbor algorithms.

Optimizing Error Rate in Intrusion Detection System Using Artificial Neural Network Algorithm

2018 ◽  
Vol 6 (9) ◽  
pp. 152
Author(s):  
S. Vijaya Rani ◽  
G. N. K. Suresh Babu
Keyword(s):  
Neural Network ◽  
Artificial Neural Network ◽  
Intrusion Detection ◽  
Error Rate ◽  
Learning Process ◽  
Nearest Neighbor ◽  
Detection System ◽  
Support Vector ◽  
K Nearest Neighbor ◽  
Artificial Neural

The illegal hackers  penetrate the servers and networks of corporate and financial institutions to gain money and extract vital information. The hacking varies from one computing system to many system. They gain access by sending malicious packets in the network through virus, worms, Trojan horses etc. The hackers scan a network through various tools and collect information of network and host. Hence it is very much essential to detect the attacks as they enter into a network. The methods  available for intrusion detection are Naive Bayes, Decision tree, Support Vector Machine, K-Nearest Neighbor, Artificial Neural Networks. A neural network consists of processing units in complex manner and able to store information and make it functional for use. It acts like human brain and takes knowledge from the environment through training and learning process. Many algorithms are available for learning process This work carry out research on analysis of malicious packets and predicting the error rate in detection of injured packets through artificial neural network algorithms.

Application of Machine Learning Approaches for the Design and Study of Anticancer Drugs

2019 ◽  
Vol 20 (5) ◽  
pp. 488-500 ◽  
Author(s):  
Yan Hu ◽  
Yi Lu ◽  
Shuo Wang ◽  
Mengying Zhang ◽  
Xiaosheng Qu ◽  
...  
Keyword(s):  
Machine Learning ◽  
Drug Design ◽  
Anticancer Drugs ◽  
Nearest Neighbor ◽  
Cost Effective ◽  
Support Vector ◽  
Learning Approaches ◽  
K Nearest Neighbor ◽  
Activity Prediction ◽  
Linear Discriminant

Background: Globally the number of cancer patients and deaths are continuing to increase yearly, and cancer has, therefore, become one of the world&#039;s highest causes of morbidity and mortality. In recent years, the study of anticancer drugs has become one of the most popular medical topics. </P><P> Objective: In this review, in order to study the application of machine learning in predicting anticancer drugs activity, some machine learning approaches such as Linear Discriminant Analysis (LDA), Principal components analysis (PCA), Support Vector Machine (SVM), Random forest (RF), k-Nearest Neighbor (kNN), and Naïve Bayes (NB) were selected, and the examples of their applications in anticancer drugs design are listed. </P><P> Results: Machine learning contributes a lot to anticancer drugs design and helps researchers by saving time and is cost effective. However, it can only be an assisting tool for drug design. </P><P> Conclusion: This paper introduces the application of machine learning approaches in anticancer drug design. Many examples of success in identification and prediction in the area of anticancer drugs activity prediction are discussed, and the anticancer drugs research is still in active progress. Moreover, the merits of some web servers related to anticancer drugs are mentioned.

Efficient detection of hacker community based on twitter data using complex networks and machine learning algorithm

2021 ◽  
pp. 1-17
Author(s):  
Ahmed Al-Tarawneh ◽  
Ja’afer Al-Saraireh
Keyword(s):  
Machine Learning ◽  
Complex Networks ◽  
Nearest Neighbor ◽  
Learning Algorithm ◽  
Machine Learning Algorithms ◽  
Machine Learning Techniques ◽  
Support Vector ◽  
K Nearest Neighbor ◽  
Efficient Detection ◽  
Suggested Keywords

Twitter is one of the most popular platforms used to share and post ideas. Hackers and anonymous attackers use these platforms maliciously, and their behavior can be used to predict the risk of future attacks, by gathering and classifying hackers’ tweets using machine-learning techniques. Previous approaches for detecting infected tweets are based on human efforts or text analysis, thus they are limited to capturing the hidden text between tweet lines. The main aim of this research paper is to enhance the efficiency of hacker detection for the Twitter platform using the complex networks technique with adapted machine learning algorithms. This work presents a methodology that collects a list of users with their followers who are sharing their posts that have similar interests from a hackers’ community on Twitter. The list is built based on a set of suggested keywords that are the commonly used terms by hackers in their tweets. After that, a complex network is generated for all users to find relations among them in terms of network centrality, closeness, and betweenness. After extracting these values, a dataset of the most influential users in the hacker community is assembled. Subsequently, tweets belonging to users in the extracted dataset are gathered and classified into positive and negative classes. The output of this process is utilized with a machine learning process by applying different algorithms. This research build and investigate an accurate dataset containing real users who belong to a hackers’ community. Correctly, classified instances were measured for accuracy using the average values of K-nearest neighbor, Naive Bayes, Random Tree, and the support vector machine techniques, demonstrating about 90% and 88% accuracy for cross-validation and percentage split respectively. Consequently, the proposed network cyber Twitter model is able to detect hackers, and determine if tweets pose a risk to future institutions and individuals to provide early warning of possible attacks.

scholarly journals Multiclass emotion prediction using heart rate and virtual reality stimuli

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Aaron Frederick Bulagang ◽  
James Mountstephens ◽  
Jason Teo
Keyword(s):  
Heart Rate ◽  
Virtual Reality ◽  
Nearest Neighbor ◽  
Subject Classification ◽  
Support Vector ◽  
Display Device ◽  
K Nearest Neighbor ◽  
Potential Applications ◽  
Health Rehabilitation ◽  
Emotion Model

Abstract Background Emotion prediction is a method that recognizes the human emotion derived from the subject’s psychological data. The problem in question is the limited use of heart rate (HR) as the prediction feature through the use of common classifiers such as Support Vector Machine (SVM), K-Nearest Neighbor (KNN) and Random Forest (RF) in emotion prediction. This paper aims to investigate whether HR signals can be utilized to classify four-class emotions using the emotion model from Russell’s in a virtual reality (VR) environment using machine learning. Method An experiment was conducted using the Empatica E4 wristband to acquire the participant’s HR, a VR headset as the display device for participants to view the 360° emotional videos, and the Empatica E4 real-time application was used during the experiment to extract and process the participant's recorded heart rate. Findings For intra-subject classification, all three classifiers SVM, KNN, and RF achieved 100% as the highest accuracy while inter-subject classification achieved 46.7% for SVM, 42.9% for KNN and 43.3% for RF. Conclusion The results demonstrate the potential of SVM, KNN and RF classifiers to classify HR as a feature to be used in emotion prediction in four distinct emotion classes in a virtual reality environment. The potential applications include interactive gaming, affective entertainment, and VR health rehabilitation.

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