scholarly journals Transcriptomic Responses of Four Pelagophytes to Nutrient (N, P) and Light Stress

2021 ◽  
Vol 8 ◽  
Author(s):  
Yoonja Kang ◽  
Matthew J. Harke ◽  
Dianna L. Berry ◽  
Jackie L. Collier ◽  
Steven W. Wilhelm ◽  
...  
Keyword(s):  
Organic Nitrogen ◽  
Light Stress ◽  
Transcriptional Response ◽  
Open Ocean ◽  
Brown Tide ◽  
Low Light ◽  
New Information ◽  
Low Concentrations ◽  
Ecological Success ◽  
Aureoumbra Lagunensis

Pelagophytes are abundant picophytoplankton within open ocean ecosystems and the causative algae of harmful brown tide blooms in estuaries. The physiological capabilities facilitating the ecological success of pelagophytes in these diverse ecosystems remains poorly understood. Here, we investigated the transcriptional response of two coastal pelagophytes (Aureococcus anophagefferens and Aureoumbra lagunensis) and two open ocean pelagophytes (Pelagococcus subviridis and Pelagomonas calceolata) to conditions commonly found within the marine ecosystems where they thrive: low concentrations of nitrogen (N), phosphorus (P), or light. OrthoMCL was used to generate a total of 62,653 orthologous groups (OGs) with only a small fraction of these OGs (2,776 or 4.4%) being shared among all four pelagophytes. Of the commonly shared OGs, 8% were significantly differentially abundant under low N, P, or light with the majority associated with energy and lipid metabolism. Distinct responses among pelagophytes included increased abundance of transcripts encoding phosphate transporters (Aureococcus) and transcripts encoding a pyrophosphatase (Aureococcus and Pelagomonas) under low P, the expression of a suite of organic nitrogen-degrading enzymes under low N (Aureoumbra and Pelagomonas), increased abundance of transcripts encoding flavodoxins relative to ferredoxins (Pelagomonas) and transcripts encoding lysophospholipase (Pelagococcus) under low light, and both increases and decreases in abundance of transcripts encoding selenoproteins in all pelagophytes except Pelagococcus. Collectively, this study provides new information on the expressed gene compliment of these poorly characterized taxa and demonstrates that these pelagophytes possess a combination of shared and unique physiological features that likely facilitate their adaptation to distinct environmental conditions.

scholarly journals Compensation Mechanism of the Photosynthetic Apparatus in Arabidopsis thaliana ch1 Mutants

2020 ◽  
Vol 22 (1) ◽  
pp. 221
Author(s):  
Joanna Wójtowicz ◽  
Adam K. Jagielski ◽  
Agnieszka Mostowska ◽  
Katarzyna B. Gieczewska
Keyword(s):  
Light Stress ◽  
Photosynthetic Apparatus ◽  
Protein Composition ◽  
Mrna Levels ◽  
Chlorophyll B ◽  
Low Light ◽  
Plant Acclimation ◽  
Chlorophyll B Deficiency ◽  
Composition Changes

The origin of chlorophyll b deficiency is a mutation (ch1) in chlorophyllide a oxygenase (CAO), the enzyme responsible for Chl b synthesis. Regulation of Chl b synthesis is essential for understanding the mechanism of plant acclimation to various conditions. Therefore, the main aim of this study was to find the strategy in plants for compensation of low chlorophyll content by characterizing and comparing the performance and spectral properties of the photosynthetic apparatus related to the lipid and protein composition in four selected Arabidopsis ch1 mutants and two Arabidopsis ecotypes. Mutation in different loci of the CAO gene, viz., NW41, ch1.1, ch1.2 and ch1.3, manifested itself in a distinct chlorina phenotype, pigment and photosynthetic protein composition. Changes in the CAO mRNA levels and chlorophyllide a (Chlide a) content in ecotypes and ch1 mutants indicated their significant role in the adjustment mechanism of the photosynthetic apparatus to low-light conditions. Exposure of mutants with a lower chlorophyll b content to short-term (1LL) and long-term low-light stress (10LL) enabled showing a shift in the structure of the PSI and PSII complexes via spectral analysis and the thylakoid composition studies. We demonstrated that both ecotypes, Col-1 and Ler-0, reacted to high-light (HL) conditions in a way remarkably resembling the response of ch1 mutants to normal (NL) conditions. We also presented possible ways of regulating the conversion of chlorophyll a to b depending on the type of light stress conditions.

scholarly journals In Bacillus subtilis, the Sirtuin Protein Deacetylase, Encoded by the srtN Gene (Formerly yhdZ), and Functions Encoded by the acuABC Genes Control the Activity of Acetyl Coenzyme A Synthetase

2009 ◽  
Vol 191 (6) ◽  
pp. 1749-1755 ◽  
Author(s):  
Jeffrey G. Gardner ◽  
Jorge C. Escalante-Semerena
Keyword(s):  
Bacillus Subtilis ◽  
Coenzyme A ◽  
Acetyl Coenzyme A ◽  
Acetyl Coenzyme ◽  
New Information ◽  
Low Concentrations ◽  
Dependent Protein ◽  
Protein Deacetylase

ABSTRACT This report provides in vivo evidence for the posttranslational control of the acetyl coenzyme A (Ac-CoA) synthetase (AcsA) enzyme of Bacillus subtilis by the acuA and acuC gene products. In addition, both in vivo and in vitro data presented support the conclusion that the yhdZ gene of B. subtilis encodes a NAD+-dependent protein deacetylase homologous to the yeast Sir2 protein (also known as sirtuin). On the basis of this new information, a change in gene nomenclature, from yhdZ to srtN (for sirtuin), is proposed to reflect the activity associated with the YdhZ protein. In vivo control of B. subtilis AcsA function required the combined activities of AcuC and SrtN. Inactivation of acuC or srtN resulted in slower growth and cell yield under low-acetate conditions than those of the wild-type strain, and the acuC srtN strain grew under low-acetate conditions as poorly as the acsA strain. Our interpretation of the latter result was that both deacetylases (AcuC and SrtN) are needed to maintain AcsA as active (i.e., deacetylated) so the cell can grow with low concentrations of acetate. Growth of an acuA acuC srtN strain on acetate was improved over that of the acuA + acuC srtN strain, indicating that the AcuA acetyltransferase enzyme modifies (i.e., inactivates) AcsA in vivo, a result consistent with previously reported in vitro evidence that AcsA is a substrate of AcuA.

scholarly journals Bivalve Feeding on the Brown Tide Aureoumbra lagunensis in a Shallow Coastal Environment

2021 ◽  
Vol 8 ◽  
Author(s):  
Eve Galimany ◽  
Jessica Lunt ◽  
Christopher J. Freeman ◽  
I. Segura-García ◽  
M. Mossop ◽  
...  
Keyword(s):  
Clearance Rate ◽  
Indian River Lagoon ◽  
Brown Tide ◽  
Bivalve Species ◽  
Clearance Rates ◽  
Interspecific Differences ◽  
Brown Tides ◽  
Indian River ◽  
Aureoumbra Lagunensis ◽  
Fish And Shellfish

Brown tides formed by Aureoumbra lagunensis decrease light penetration in the water column and are often followed by hypoxic events that result in the loss of fish and shellfish. To understand the ability of bivalve filter feeders to control and prevent A. lagunensis blooms, we exposed eastern oysters (Crassostrea virginica), hooked mussels (Ischadium recurvum), and hard clams (Mercenaria mercenaria) to a naturally co-occurring brown tide in the Indian River Lagoon (IRL), Florida, United States. Bivalves were exposed in the laboratory to multiple concentrations (104 to 106 cells mL–1) of isotopically labeled (13C and 15N) A. lagunensis cells. The standard clearance rate (herein clearance rate) of each bivalve species was calculated using flow cytometry to quantify A. lagunensis cell removal. The highest clearance rates were at 104 cells mL–1, but values varied across bivalve species (2.16 ± 0.30, 3.03 ± 0.58, and 0.41 ± 0.12 L h–1 for C. virginica, I. recurvum, and M. mercenaria, respectively). Although clearance rates decreased with increasing bloom concentrations, bivalves were still consuming algal cells at all concentrations and were retaining and assimilating more cells at the highest concentrations, as revealed by δ13C and δ15N values. We highlight interspecific differences among bivalve species in the removal of A. lagunensis, supporting the importance of healthy and diverse filter feeding communities in estuaries, especially as threats of brown tides and other HABs are increasing in the Anthropocene.

The autotrophic nutrition of symbiotic marine coelenterates with special reference to hermatypic corals. I. Movement of photosynthetic products between the symbionts

1971 ◽  
Vol 178 (1050) ◽  
pp. 111-129 ◽  
Keyword(s):  
Amino Acids ◽  
Organic Nitrogen ◽  
Sea Water ◽  
Nitrogen Compounds ◽  
Organic Substances ◽  
Low Concentrations ◽  
Steady Rate ◽  
Hermatypic Corals ◽  
Photosynthetic Products ◽  
Related Compounds

When symbiotic coelenterates, especially hermatypic corals, were incubated in the light in sea water containing NaH 14 CO 3 , small quantities of fixed 14 C were released from the tissues at a steady rate over 4 h. The rate of release was greatly increased in the presence of glycerol, glucose and alanine; the additional 14 C released was in the same substance as that added to the medium. The following related compounds had little or no effect on 14 C release : ethylene glycol, sorbose, fructose, glucosamine, glycine, proline, serine and glutamic acid. Such results have been previously reported in other symbiotic systems, and the substances causing the specific release of fixed 14 C are believed to be those which move from the autotrophic to the heterotrophic symbiont. This belief is supported here by previous observations that glycerol, glucose and alanine are among the most important organic substances released by freshly isolated zooxanthellae. Ammonium chloride increased the amount of fixed 14 C released by corals into alanine media, possibly due to conversion of ammonia to amino acids by zooxanthellae. Appreciable release of 14 C fixed in the dark also occurred into alanine solutions. These results suggest possible roles of zooxanthellae in supplying organic nitrogen compounds to the host cell at night as well as during the day. The involvement of zooxanthellae in ‘recycling’ nitrogen compounds within the association may help to explain the success of corals in seas poor in nutrients. There was substantial utilization of external glycerol and glucose when supplied at either high or low concentrations. Corals may well be able to utilize some of the small amounts of organic matter dissolved in sea water in the natural environment.

Does Astaxanthin Protect Haematococcus against Light Damage?

1998 ◽  
Vol 53 (1-2) ◽  
pp. 93-100 ◽  
Author(s):  
Lu Fan ◽  
Avigad Vonshak ◽  
Aliza Zarka ◽  
Sammy Boussiba
Keyword(s):  
Light Intensity ◽  
Light Stress ◽  
Phosphate Starvation ◽  
High Light Intensity ◽  
High Irradiance ◽  
High Light ◽  
Protective Agent ◽  
Light Damage ◽  
Low Light ◽  
Very High

Abstract The photoprotective function of the ketocarotenoid astaxanthin in Haematococcus was questioned. When exposed to high irradiance and/or nutritional stress, green Haematococcus cells turned red due to accumulation of an immense quantity of the red pigment astaxanthin. Our results demonstrate that: 1) The addition of diphenylamine, an inhibitor of astaxanthin biosynthesis, causes cell death under high light intensity; 2) Red cells are susceptible to high light stress to the same extent or even higher then green ones upon exposure to a very high light intensity (4000 μmol photon m-2 s-1); 3) Addition of 1O2 generators (methylene blue, rose bengal) under noninductive conditions (low light of 100 (μmol photon m-2 s-1) induced astaxanthin accumulation. This can be reversed by an exogenous 1O2 quencher (histidine); 4) Histidine can prevent the accumulation of astaxanthin induced by phosphate starvation. We suggest that: 1) Astaxanthin is the result of the photoprotection process rather than the protective agent; 2) 1O2 is involved indirectly in astaxanthin accumulation process.

Organic nitrogen uptake and growth by the chrysophyte Aureococcus anophagefferens during a brown tide event

1997 ◽  
Vol 129 (2) ◽  
pp. 377-387 ◽  
Author(s):  
G. M. Berg ◽  
P. M. Glibert ◽  
M. W. Lomas ◽  
M. A. Burford
Keyword(s):  
Nitrogen Uptake ◽  
Organic Nitrogen ◽  
Brown Tide ◽  
Aureococcus Anophagefferens ◽  
Organic Nitrogen Uptake

scholarly journals Metabolomic indicators for low-light stress in seagrass

2020 ◽  
Vol 114 ◽  
pp. 106316
Author(s):  
L.L. Griffiths ◽  
S.D. Melvin ◽  
R.M. Connolly ◽  
R.M. Pearson ◽  
C.J. Brown
Keyword(s):  
Light Stress ◽  
Low Light ◽  
Low Light Stress

scholarly journals Nutrient-ColimitedTrichodesmiumas a Nitrogen Source or Sink in a Future Ocean

2017 ◽  
Vol 84 (3) ◽  
Author(s):  
Nathan G. Walworth ◽  
Fei-Xue Fu ◽  
Michael D. Lee ◽  
Xiaoni Cai ◽  
Mak A. Saito ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Nitrogen Source ◽  
Nitrogen Metabolism ◽  
Organic Nitrogen ◽  
Open Ocean ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Nitrogen Inputs ◽  
Ocean Conditions ◽  
Nitrogen Scavenging

ABSTRACTNitrogen-fixing (N2) cyanobacteria provide bioavailable nitrogen to vast ocean regions but are in turn limited by iron (Fe) and/or phosphorus (P), which may force them to employ alternative nitrogen acquisition strategies. The adaptive responses of nitrogen fixers to global-change drivers under nutrient-limited conditions could profoundly alter the current ocean nitrogen and carbon cycles. Here, we show that the globally important N2fixerTrichodesmiumfundamentally shifts nitrogen metabolism toward organic-nitrogen scavenging following long-term high-CO2adaptation under iron and/or phosphorus (co)limitation. Global shifts in transcripts and proteins under high-CO2/Fe-limited and/or P-limited conditions include decreases in the N2-fixing nitrogenase enzyme, coupled with major increases in enzymes that oxidize trimethylamine (TMA). TMA is an abundant, biogeochemically important organic nitrogen compound that supports rapidTrichodesmiumgrowth while inhibiting N2fixation. In a future high-CO2ocean, this whole-cell energetic reallocation toward organic nitrogen scavenging and away from N2fixation may reduce new-nitrogen inputs byTrichodesmiumwhile simultaneously depleting the scarce fixed-nitrogen supplies of nitrogen-limited open-ocean ecosystems.IMPORTANCETrichodesmiumis among the most biogeochemically significant microorganisms in the ocean, since it supplies up to 50% of the new nitrogen supporting open-ocean food webs. We usedTrichodesmiumcultures adapted to high-CO2conditions for 7 years, followed by additional exposure to iron and/or phosphorus (co)limitation. We show that “future ocean” conditions of high CO2and concurrent nutrient limitation(s) fundamentally shift nitrogen metabolism away from nitrogen fixation and instead toward upregulation of organic nitrogen-scavenging pathways. We show that the responses ofTrichodesmiumto projected future ocean conditions include decreases in the nitrogen-fixing nitrogenase enzymes coupled with major increases in enzymes that oxidize the abundant organic nitrogen source trimethylamine (TMA). Such a shift toward organic nitrogen uptake and away from nitrogen fixation may substantially reduce new-nitrogen inputs byTrichodesmiumto the rest of the microbial community in the future high-CO2ocean, with potential global implications for ocean carbon and nitrogen cycling.

Distinction and characterisation of submergence tolerant and sensitive rice cultivars, probed by the fluorescence OJIP rise kinetics

2009 ◽  
Vol 36 (3) ◽  
pp. 222 ◽  
Author(s):  
Ramani Kumar Sarkar ◽  
Debabrata Panda
Keyword(s):  
Photosynthetic Rate ◽  
Oryza Sativa L ◽  
Indica Rice ◽  
Light Stress ◽  
Elongation Growth ◽  
Rice Cultivars ◽  
Low Light ◽  
Test Parameters ◽  
Fluorescence Characteristics ◽  
Low Light Stress

Rice (Oryza sativa L.) plants experience multiple abiotic stresses when they are submerged. In addition to the effects of submergence on gas exchange, water also creates shading of submerged plants. It is believed that responses to submergence are actually responses to low light stress, although during complete submergence in addition to low light other environmental factors like reduce movement of gases affect the plant growth, and therefore, the consequences of submergence are not always alike to shade. We monitored the extent to which shade and submergence change the plant height, chlorophyll a fluorescence characteristics and CO2 photosynthetic rate in three Indica rice cultivars, namely Sarala, Kalaputia and Khoda, which differed in submergence tolerance. There were both similarities and dissimilarities between the consequence of shade and submergence on rice plants. Under shade conditions, elongation growth was greater in submergence tolerant cultivars than the sensitive cultivar, whereas elongation growth was greater under submergence in sensitive cultivar. The reduction in chlorophyll content, damage to PSII, and decrease in CO2 photosynthetic rate was more notable under submergence than the shade conditions. Our results show that several JIP-test parameters clearly distinguish between submergence tolerant and sensitive cultivars, and responses to submergence among different rice cultivars differ depending on their sensitivity to submergence. There were different interactions between cultivar and shade (~low light) and cultivar and submergence.

Sign in / Sign up

Export Citation Format

Share Document