scholarly journals Genome-Wide Mining and Identification of Protein Kinase Gene Family Impacts Salinity Stress Tolerance in Highly Dense Genetic Map Developed from Interspecific Cross between G. hirsutum L. and G. darwinii G. Watt

Agronomy ◽  
2019 ◽  
Vol 9 (9) ◽  
pp. 560 ◽  
Author(s):  
Muhammad Shehzad ◽  
Zhongli Zhou ◽  
Allah Ditta ◽  
Xiaoyan Cai ◽  
Majid Khan ◽  
...  
Keyword(s):  
Salt Stress ◽  
Gene Family ◽  
Stress Tolerance ◽  
Genetic Map ◽  
Interspecific Cross ◽  
Genetic Erosion ◽  
Growth And Yield ◽  
Limiting Factor ◽  
Kinase Gene ◽  
Cotton Species

Abiotic stress is an important limiting factor in crop growth and yield around the world. Owing to the continued genetic erosion of the upland cotton germplasm due to intense selection and inbreeding, attention has shifted towards wild cotton progenitors which offer unique traits that can be introgressed into the cultivated cotton to improve their genetic performance. The purpose of this study was to characterize the Pkinase gene family in a previously developed genetic map of the F2 population derived from a cross between two cotton species: Gossypium hirsutum (CCRI 12-4) and Gossypium darwinii (5-7). Based on phylogenetic analysis, Pkinase (PF00069) was found to be the dominant domain with 151 genes in three cotton species, categorized into 13 subfamilies. Structure analysis of G. hirsutum genes showed that a greater percentage of genes and their exons were highly conserved within the group. Syntenic analysis of gene blocks revealed 99 duplicated genes among G. hirsutum, Gossypium arboreum and Gossypium raimondii. Most of the genes were duplicated in segmental pattern. Expression pattern analysis showed that the Pkinase gene family possessed species-level variation in induction to salinity and G. darwinii had higher expression levels as compared to G. hirsutum. Based on RNA sequence analysis and preliminary RT-qPCR verification, we hypothesized that the Pkinase gene family, regulated by transcription factors (TFs) and miRNAs, might play key roles in salt stress tolerance. These findings inferred comprehensive information on possible structure and function of Pkinase gene family in cotton under salt stress.

scholarly journals The Potentiality of Marine Macro-Algae as Bio-Fertilizers to Improve the Productivity and Salt Stress Tolerance of Canola (Brassica napus L.) Plants

Agronomy ◽  
2019 ◽  
Vol 9 (3) ◽  
pp. 146 ◽  
Author(s):  
Hashem H.A. ◽  
Mansour H.A. ◽  
El-Khawas S.A. ◽  
Hassanein R.A.
Keyword(s):  
Salt Stress ◽  
Brassica Napus ◽  
Stress Tolerance ◽  
Growth And Yield ◽  
Phytochemical Analysis ◽  
Salt Stress Tolerance ◽  
Brassica Napus L ◽  
Indole Butyric Acid ◽  
Total Carbohydrates ◽  
The Impact

The present study aimed to evaluate the potentiality of three seaweeds, which belong to different algal taxa (green alga Ulva lactuca Linnaeus, brown alga Cystoseira spp., and red alga Gelidium crinale (Hare ex Turner) Gaillon) as bio-fertilizers to improve the growth and yield of canola (Brassica napus L.) plants under greenhouse conditions. Furthermore, the impact of seaweeds in alleviating the effects of salt stress (75 and 150 mM NaCl) on canola plants was also investigated. The three examined seaweeds (applied as soil amendments) successfully alleviated the harmful effects of salinity on canola plants by significantly reducing the inhibition of chlorophyll a, b, total carbohydrate accumulation, and growth promoting hormones, while increasing antioxidative compounds, such as phenols, flavonoids, anthocyanin, and osmoprotectants, including total carbohydrates and proline. Phytochemical analysis of the three examined seaweeds suggests that their stimulatory effect on growth and productivity under normal and salinity growth conditions may be linked to their constituents of a wide variety of growth promotive hormones, including indole acetic acid, indole butyric acid, gibberellic acid, cytokinins, total carbohydrates, and phenolic compounds. U. lactuca was found to be the best candidate to be used as a bio-fertilizer to improve canola growth, yield, and salt stress tolerance.

scholarly journals TaCIPK29, a CBL-Interacting Protein Kinase Gene from Wheat, Confers Salt Stress Tolerance in Transgenic Tobacco

PLoS ONE ◽  
2013 ◽  
Vol 8 (7) ◽  
pp. e69881 ◽  
Author(s):  
Xiaomin Deng ◽  
Wei Hu ◽  
Shuya Wei ◽  
Shiyi Zhou ◽  
Fan Zhang ◽  
...  
Keyword(s):  
Salt Stress ◽  
Protein Kinase ◽  
Stress Tolerance ◽  
Transgenic Tobacco ◽  
Salt Stress Tolerance ◽  
Kinase Gene ◽  
Interacting Protein ◽  
Protein Kinase Gene

scholarly journals Coordinated bacterial and plant sulfur metabolism in Enterobacter sp. SA187–induced plant salt stress tolerance

2021 ◽  
Vol 118 (46) ◽  
pp. e2107417118
Author(s):  
Cristina Andrés-Barrao ◽  
Hanin Alzubaidy ◽  
Rewaa Jalal ◽  
Kiruthiga G. Mariappan ◽  
Axel de Zélicourt ◽  
...  
Keyword(s):  
Salt Stress ◽  
Stress Tolerance ◽  
Sulfur Metabolism ◽  
Endophytic Bacterium ◽  
Growth And Yield ◽  
Common Mechanism ◽  
Salt Stress Tolerance ◽  
Bacterial Gene ◽  
Bacterial Gene Expression ◽  
Flagellar Biosynthesis

Enterobacter sp. SA187 is a root endophytic bacterium that maintains growth and yield of plants under abiotic stress conditions. In this work, we compared the metabolic wirings of Arabidopsis and SA187 in the free-living and endophytic interaction states. The interaction of SA187 with Arabidopsis induced massive changes in bacterial gene expression for chemotaxis, flagellar biosynthesis, quorum sensing, and biofilm formation. Besides modification of the bacterial carbon and energy metabolism, various nutrient and metabolite transporters and the entire sulfur pathway were up-regulated. Under salt stress, Arabidopsis resembled plants under sulfate starvation but not when colonized by SA187, which reprogramed the sulfur regulon of Arabidopsis. In accordance, salt hypersensitivity of multiple Arabidopsis sulfur metabolism mutants was partially or completely rescued by SA187 as much as by the addition of sulfate, L-cysteine, or L-methionine. Many components of the sulfur metabolism that are localized in the chloroplast were partially rescued by SA187. Finally, salt-induced accumulation of reactive oxygen species as well as the hypersensitivity of LSU mutants were suppressed by SA187. LSUs encode a central regulator linking sulfur metabolism to chloroplast superoxide dismutase activity. The coordinated regulation of the sulfur metabolic pathways in both the beneficial microorganism and the host plant is required for salt stress tolerance in Arabidopsis and might be a common mechanism utilized by different beneficial microbes to mitigate the harmful effects of different abiotic stresses on plants.

scholarly journals A Na2CO3-responsive chitinase gene from Chinese wildrye improve pathogen resistance and saline-alkali stress tolerance in transgenic tobacco and maize

2019 ◽  
Author(s):  
Xiang-Guo Liu ◽  
Ying Yu ◽  
Qing Liu ◽  
Suren Deng ◽  
Xue-Bo Jin ◽  
...  
Keyword(s):  
Salt Stress ◽  
Stress Tolerance ◽  
Transgenic Tobacco ◽  
Pathogen Resistance ◽  
Chitinase Gene ◽  
Plant Performance ◽  
Growth And Yield ◽  
Neutral Salt ◽  
Alkali Stress ◽  
Alkaline Salt

AbstractSalinity and microbial pathogens are the major limiting factors for crop production. Although the manipulation of many genes could improve plant performance under either of these stresses, few genes have reported that could improve both pathogen resistance and saline-alkali stress tolerance. In this study, we identified a new chitinase gene CHITINASE 2 (LcCHI2) that encodes a class II chitinase from a Chinese wildrye (Leymus Chinensis), which grows naturally on alkaline-sodic soil. Overexpression of LcCHI2 increased chitinase activity in transgenic plants. The transgenic tobacco and maize exhibited improved pathogen resistance and enhanced both neutral salt and alkaline salt stress tolerance. Overexpression of LcCHI2 reduced sodium (Na+) accumulation, malondialdehyde content and relative electrical conductivity in transgenic tobacco under salt stress. In addition, the transgenic tobacco showed diminished lesion against bacterial and fungal pathogen challenge, suggesting an improved disease resistance. Similar improved performance was also observed in LcCHI2-overexpressed maize under both pathogen and salt stresses. It is worth noting that this genetic manipulation does not impair the growth and yield of transgenic tobacco and maize under normal cultivation condition. Apparently, application of LcCHI2 provides a new train of thought for genetically engineering saline-alkali and pathogen resistant crops of both dicots and monocots.

scholarly journals Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Feng Zhang ◽  
Guozhong Zhu ◽  
Lei Du ◽  
Xiaoguang Shang ◽  
Chaoze Cheng ◽  
...  
Keyword(s):  
Salt Stress ◽  
Stress Tolerance ◽  
Stress Responses ◽  
Genetic Regulation ◽  
Ion Homeostasis ◽  
Rna Seq ◽  
Salt Stress Tolerance ◽  
Crop Resistance ◽  
Cotton Species ◽  
Diploid Cotton

Abstract Cotton is an economically important crop throughout the world and is a pioneer crop in salt stress tolerance research. Investigation of the genetic regulation of salinity tolerance will provide information for salt stress-resistant breeding. Here, we employed next-generation RNA-Seq technology to elucidate the salt-tolerant mechanisms in cotton using the diploid cotton species Gossypium davidsonii which has superior stress tolerance. A total of 4744 and 5337 differentially expressed genes (DEGs) were found to be involved in salt stress tolerance in roots and leaves, respectively. Gene function annotation elucidated salt overly sensitive (SOS) and reactive oxygen species (ROS) signaling pathways. Furthermore, we found that photosynthesis pathways and metabolism play important roles in ion homeostasis and oxidation balance. Moreover, our studies revealed that alternative splicing also contributes to salt-stress responses at the posttranscriptional level, implying its functional role in response to salinity stress. This study not only provides a valuable resource for understanding the genetic control of salt stress in cotton, but also lays a substantial foundation for the genetic improvement of crop resistance to salt stress.

scholarly journals Evolution and Stress Responses of CLO Genes and Potential Function of the GhCLO06 Gene in Salt Resistance of Cotton

2022 ◽  
Vol 12 ◽  
Author(s):  
Xiaokang Fu ◽  
Yonglin Yang ◽  
Meng Kang ◽  
Hengling Wei ◽  
Boying Lian ◽  
...  
Keyword(s):  
Salt Stress ◽  
Salt Tolerance ◽  
Gene Family ◽  
Stress Responses ◽  
Calcium Binding ◽  
Algal Species ◽  
Evolutionary Analysis ◽  
Qrt Pcr ◽  
Green Algal ◽  
Cotton Species

The caleosin (CLO) protein family displays calcium-binding properties and plays an important role in the abiotic stress response. Here, a total of 107 CLO genes were identified in 15 plant species, while no CLO genes were detected in two green algal species. Evolutionary analysis revealed that the CLO gene family may have evolved mainly in terrestrial plants and that biological functional differentiation between species and functional expansion within species have occurred. Of these, 56 CLO genes were identified in four cotton species. Collinearity analysis showed that CLO gene family expansion mainly occurred through segmental duplication and whole-genome duplication in cotton. Sequence alignment and phylogenetic analysis showed that the CLO proteins of the four cotton species were mainly divided into two types: H-caleosins (class I) and L-caleosins (class II). Cis-acting element analysis and quantitative RT–PCR (qRT–PCR) suggested that GhCLOs might be regulated by abscisic acid (ABA) and methyl jasmonate (MeJA). Moreover, transcriptome data and qRT–PCR results revealed that GhCLO genes responded to salt and drought stresses. Under salt stress, gene-silenced plants (TRV: GhCLO06) showed obvious yellowing and wilting, higher malondialdehyde (MDA) content accumulation, and significantly lower activities of superoxide dismutase (SOD) and peroxidase (POD), indicating that GhCLO06 plays a positive regulatory role in cotton salt tolerance. In gene-silenced plants (TRV: GhCLO06), ABA-related genes (GhABF2, GhABI5, and GhNAC4) were significantly upregulated after salt stress, suggesting that the regulation of salt tolerance may be related to the ABA signaling pathway. This research provides an important reference for further understanding and analyzing the molecular regulatory mechanism of CLOs for salt tolerance.

scholarly journals Functional Characterization of GhACX3 Gene Reveals Its Significant Role in Enhancing Drought and Salt Stress Tolerance in Cotton

2021 ◽  
Vol 12 ◽  
Author(s):  
Margaret L. Shiraku ◽  
Richard Odongo Magwanga ◽  
Xiaoyan Cai ◽  
Joy Nyangasi Kirungu ◽  
Yanchao Xu ◽  
...  
Keyword(s):  
Salt Stress ◽  
Abiotic Stress ◽  
Gene Family ◽  
Stress Tolerance ◽  
Critical Role ◽  
Functional Characterization ◽  
Regulatory Elements ◽  
Gene Family Evolution ◽  
Tetraploid Cotton ◽  
Drought And Salt Stress

The acyl-coenzyme A oxidase 3 (ACX3) gene involved in the β-oxidation pathway plays a critical role in plant growth and development as well as stress response. Earlier on, studies focused primarily on the role of β-oxidation limited to fatty acid breakdown. However, ACX3 peroxisomal β-oxidation pathways result in a downstream cascade of events that act as a transduction of biochemical and physiological responses to stress. A role that is yet to be studied extensively. In this study, we identified 20, 18, 22, 23, 20, 11, and 9 proteins in Gossypium hirsutum, G. barbadense, G. tomentosum, G. mustelinum, G. darwinii, G. arboretum, and G. raimondii genomes, respectively. The tetraploid cotton genome had protein ranging between 18 and 22, while diploids had between 9 and 11. After analyzing the gene family evolution or selection pressure, we found that this gene family undergoes purely segmental duplication both in diploids and tetraploids. W-Box (WRKY-binding site), ABRE, CAAT–Box, TATA-box, MYB, MBS, LTR, TGACG, and CGTCA-motif are abiotic stress cis-regulatory elements identified in this gene family. All these are the binding sites for abiotic stress transcription factors, indicating that this gene is essential. Genes found in G. hirsutum showed a clear response to drought and salinity stress, with higher expression under drought and salt stress, particularly in the leaf and root, according to expression analysis. We selected Gh_DO1GO186, one of the highly expressed genes, for functional characterization. We functionally characterized the GhACX3 gene through overexpression and virus-induced gene silencing (VIGS). Overexpression of this gene enhanced tolerance under stress, which was exhibited by the germination assay. The overexpressed seed growth rate was faster relative to control under drought and salt stress conditions. The survival rate was also higher in overexpressed plants relative to control plants under stress. In contrast, the silencing of the GhACX3 gene in cotton plants resulted in plants showing the stress susceptibility phenotype and reduced root length compared to control. Biochemical analysis also demonstrated that GhACX3-silenced plants experienced oxidative stress while the overexpressed plants did not. This study has revealed the importance of the ACX3 family during stress tolerance and can breed stress-resilient cultivar.

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